Wall clock time and date at job start Mon Mar 30 2020 01:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 120.00007 * 2 1 4 4 H 1.08002 * 119.99585 * 322.03560 * 3 2 1 5 5 C 1.38809 * 120.00454 * 142.03669 * 3 2 1 6 6 N 1.31622 * 120.00244 * 157.04165 * 5 3 2 7 7 Si 1.86803 * 119.99625 * 337.04429 * 5 3 2 8 8 H 1.48499 * 109.47190 * 95.68124 * 7 5 3 9 9 H 1.48497 * 109.47196 * 215.67948 * 7 5 3 10 10 H 1.48500 * 109.47327 * 335.68138 * 7 5 3 11 11 C 1.46492 * 120.00235 * 179.97438 * 2 1 3 12 12 C 1.50705 * 109.47203 * 89.99801 * 11 2 1 13 13 C 1.34519 * 126.07533 * 94.71375 * 12 11 2 14 14 O 1.34800 * 107.28124 * 180.26624 * 13 12 11 15 15 C 1.34428 * 107.69204 * 0.02562 * 14 13 12 16 16 C 1.47770 * 125.72826 * 179.97438 * 15 14 13 17 17 C 1.39586 * 120.15922 * 0.02562 * 16 15 14 18 18 C 1.37922 * 119.87836 * 180.02562 * 17 16 15 19 19 C 1.38409 * 120.20357 * 359.97438 * 18 17 16 20 20 C 1.38261 * 120.32321 * 0.02562 * 19 18 17 21 21 C 1.38254 * 120.11602 * 359.72520 * 20 19 18 22 22 F 1.35101 * 120.10391 * 180.27991 * 21 20 19 23 23 N 1.31247 * 108.54411 * 0.02562 * 15 14 13 24 24 H 1.08997 * 109.47066 * 265.66311 * 1 2 3 25 25 H 1.09001 * 109.47213 * 25.66563 * 1 2 3 26 26 H 1.09004 * 109.47014 * 145.66587 * 1 2 3 27 27 H 0.96992 * 119.99711 * 179.97438 * 6 5 3 28 28 H 1.09005 * 109.47459 * 330.00476 * 11 2 1 29 29 H 1.09001 * 109.47812 * 209.99934 * 11 2 1 30 30 H 1.08000 * 126.35937 * 0.24921 * 13 12 11 31 31 H 1.07995 * 120.06282 * 359.97438 * 17 16 15 32 32 H 1.08002 * 119.89851 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.83892 * 179.97438 * 19 18 17 34 34 H 1.07996 * 119.94689 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7811 2.0222 -0.5754 5 6 3.3175 1.3132 0.7395 6 7 4.2042 2.2308 0.4167 7 14 3.6307 0.1820 2.1927 8 1 4.4686 -0.9638 1.7566 9 1 4.3370 0.9331 3.2614 10 1 2.3356 -0.3225 2.7154 11 6 2.1975 -1.2686 0.0006 12 6 2.4487 -1.7043 -1.4201 13 6 3.5612 -1.4645 -2.1373 14 8 3.3799 -2.0156 -3.3540 15 6 2.1618 -2.5842 -3.3675 16 6 1.5571 -3.3017 -4.5091 17 6 2.2621 -3.4353 -5.7064 18 6 1.6919 -4.1056 -6.7683 19 6 0.4233 -4.6464 -6.6501 20 6 -0.2825 -4.5190 -5.4681 21 6 0.2784 -3.8542 -4.3934 22 9 -0.4092 -3.7348 -3.2367 23 7 1.5995 -2.3942 -2.1970 24 1 -0.3633 -0.0777 1.0247 25 1 -0.3634 0.9263 -0.4451 26 1 -0.3633 -0.8486 -0.5796 27 1 5.0200 2.3200 0.9336 28 1 1.6085 -2.0282 0.5147 29 1 3.1500 -1.1381 0.5143 30 1 4.4369 -0.9294 -1.8008 31 1 3.2519 -3.0138 -5.8013 32 1 2.2369 -4.2088 -7.6950 33 1 -0.0177 -5.1698 -7.4856 34 1 -1.2717 -4.9438 -5.3824 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559522243.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:44 Heat of formation + Delta-G solvation = 38.512874 kcal Electronic energy + Delta-G solvation = -20794.229988 eV Core-core repulsion = 17416.706953 eV Total energy + Delta-G solvation = -3377.523036 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.74538 -42.73633 -38.99140 -36.14525 -34.07257 -32.44019 -31.58953 -30.78034 -29.23781 -26.59171 -25.76874 -23.89021 -22.97002 -21.53953 -20.99873 -20.33999 -17.93812 -17.18770 -16.60465 -16.25672 -16.12725 -15.77546 -15.39055 -15.22682 -14.56646 -14.08925 -13.99873 -13.74013 -13.18365 -13.11148 -12.66926 -12.55948 -12.45094 -12.01770 -11.73774 -11.38637 -11.20554 -10.91517 -10.69579 -10.49080 -10.19174 -9.96691 -9.74470 -9.50942 -8.99871 -8.59919 -7.89290 -6.89418 -6.07190 -3.47563 0.55708 0.98749 2.14142 2.98020 3.10724 3.24657 3.42858 3.49851 3.59524 4.11279 4.14260 4.45568 4.57867 4.66185 4.98309 5.06119 5.11161 5.36920 5.39989 5.51971 5.61511 5.81486 5.83717 5.99407 6.07731 6.19286 6.31294 6.41892 6.44516 6.48427 6.61936 6.72097 6.78723 6.85874 7.98163 8.20320 8.34320 8.91441 9.63402 10.07001 11.08162 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.031060 B = 0.004851 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.258947 B = 5771.190918 C = 6215.563313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.600 5.600 3 C -0.269 4.269 4 H 0.078 0.922 5 C 0.036 3.964 6 N -0.896 5.896 7 Si 0.870 3.130 8 H -0.284 1.284 9 H -0.297 1.297 10 H -0.266 1.266 11 C 0.211 3.789 12 C -0.009 4.009 13 C -0.049 4.049 14 O -0.203 6.203 15 C 0.187 3.813 16 C -0.034 4.034 17 C -0.068 4.068 18 C -0.133 4.133 19 C -0.082 4.082 20 C -0.159 4.159 21 C 0.142 3.858 22 F -0.112 7.112 23 N -0.440 5.440 24 H 0.010 0.990 25 H 0.043 0.957 26 H 0.035 0.965 27 H 0.264 0.736 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.219 0.781 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.446 -14.576 -13.190 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.323 5.323 3 C -0.397 4.397 4 H 0.096 0.904 5 C -0.164 4.164 6 N -0.537 5.537 7 Si 0.699 3.301 8 H -0.212 1.212 9 H -0.225 1.225 10 H -0.190 1.190 11 C 0.083 3.917 12 C -0.134 4.134 13 C -0.120 4.120 14 O -0.089 6.089 15 C -0.015 4.015 16 C -0.036 4.036 17 C -0.088 4.088 18 C -0.152 4.152 19 C -0.101 4.101 20 C -0.178 4.178 21 C 0.121 3.879 22 F -0.090 7.090 23 N -0.171 5.171 24 H 0.029 0.971 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.235 0.765 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.926 -14.642 -12.934 20.148 hybrid contribution 1.002 -0.027 0.875 1.330 sum -3.924 -14.669 -12.059 19.391 Atomic orbital electron populations 1.21107 0.83769 0.99526 0.97601 1.44038 1.01222 1.01395 1.85638 1.18847 1.06286 0.90447 1.24135 0.90426 1.25473 0.96718 0.96571 0.97664 1.69893 1.08414 1.36087 1.39285 0.87032 0.78324 0.80037 0.84707 1.21154 1.22506 1.19028 1.19694 0.97321 0.88307 0.86345 1.23225 0.90077 0.98524 1.01530 1.25091 1.03302 1.02060 0.81594 1.84406 1.33837 1.55626 1.35020 1.23274 0.82698 1.00996 0.94573 1.17355 0.93559 1.01376 0.91339 1.21170 0.99939 0.96875 0.90770 1.21095 0.95897 0.99183 0.98979 1.21135 0.94248 0.97863 0.96840 1.21100 1.01835 1.02242 0.92586 1.17581 0.89212 0.97920 0.83190 1.91624 1.78005 1.93441 1.45895 1.70663 1.30568 1.15125 1.00771 0.97137 0.93807 0.94576 0.92584 0.92222 0.91181 0.76486 0.84277 0.84742 0.84705 0.84074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.75 10.70 59.85 0.64 3.39 16 2 N -0.60 -15.06 2.45 -182.50 -0.45 -15.51 16 3 C -0.27 -7.58 9.88 -15.06 -0.15 -7.73 16 4 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 5 C 0.04 1.03 5.29 -17.43 -0.09 0.94 16 6 N -0.90 -26.57 13.97 55.49 0.78 -25.80 16 7 Si 0.87 21.58 25.10 -169.99 -4.27 17.31 16 8 H -0.28 -6.68 6.68 56.52 0.38 -6.31 16 9 H -0.30 -7.47 7.11 56.52 0.40 -7.06 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 C 0.21 4.85 5.07 -5.20 -0.03 4.83 16 12 C -0.01 -0.20 6.68 -82.88 -0.55 -0.75 16 13 C -0.05 -1.00 12.08 29.42 0.36 -0.65 16 14 O -0.20 -3.83 10.52 3.99 0.04 -3.79 16 15 C 0.19 3.54 7.89 -13.91 -0.11 3.43 16 16 C -0.03 -0.51 5.88 -104.92 -0.62 -1.13 16 17 C -0.07 -0.78 9.71 -39.19 -0.38 -1.16 16 18 C -0.13 -1.14 10.03 -39.63 -0.40 -1.54 16 19 C -0.08 -0.66 10.04 -39.51 -0.40 -1.06 16 20 C -0.16 -1.60 10.01 -39.57 -0.40 -2.00 16 21 C 0.14 2.00 7.29 -39.00 -0.28 1.72 16 22 F -0.11 -1.87 15.77 2.25 0.04 -1.83 16 23 N -0.44 -9.38 9.91 -7.98 -0.08 -9.46 16 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.04 0.94 8.00 -51.93 -0.42 0.53 16 26 H 0.04 0.75 8.10 -51.93 -0.42 0.33 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.06 1.28 8.07 -51.93 -0.42 0.87 16 29 H 0.07 1.66 3.38 -51.93 -0.18 1.48 16 30 H 0.22 4.08 8.06 -52.49 -0.42 3.66 16 31 H 0.14 1.46 7.90 -52.49 -0.41 1.04 16 32 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 34 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 301.36 15.07 4.54 4.54 Total: -1.00 -32.48 301.36 -5.35 -37.83 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -3.54 Total: -1.58 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -2.41 Total: -1.71 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.25 Total: -50.77 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: 0.04 Total: -3.79 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.27 Total: 17.31 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.48 -5.35 -37.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559522243.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.342 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds