Wall clock time and date at job start Mon Mar 30 2020 01:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 120.00007 * 2 1 4 4 H 1.08002 * 119.99585 * 322.03560 * 3 2 1 5 5 C 1.38809 * 120.00454 * 142.03669 * 3 2 1 6 6 N 1.31622 * 120.00244 * 157.04165 * 5 3 2 7 7 Si 1.86803 * 119.99625 * 337.04429 * 5 3 2 8 8 H 1.48499 * 109.47190 * 95.68124 * 7 5 3 9 9 H 1.48497 * 109.47196 * 215.67948 * 7 5 3 10 10 H 1.48500 * 109.47327 * 335.68138 * 7 5 3 11 11 C 1.46492 * 120.00235 * 179.97438 * 2 1 3 12 12 C 1.50705 * 109.47203 * 89.99801 * 11 2 1 13 13 C 1.34519 * 126.07533 * 94.71375 * 12 11 2 14 14 O 1.34800 * 107.28124 * 180.26624 * 13 12 11 15 15 C 1.34428 * 107.69204 * 0.02562 * 14 13 12 16 16 C 1.47770 * 125.72826 * 179.97438 * 15 14 13 17 17 C 1.39586 * 120.15922 * 0.02562 * 16 15 14 18 18 C 1.37922 * 119.87836 * 180.02562 * 17 16 15 19 19 C 1.38409 * 120.20357 * 359.97438 * 18 17 16 20 20 C 1.38261 * 120.32321 * 0.02562 * 19 18 17 21 21 C 1.38254 * 120.11602 * 359.72520 * 20 19 18 22 22 F 1.35101 * 120.10391 * 180.27991 * 21 20 19 23 23 N 1.31247 * 108.54411 * 0.02562 * 15 14 13 24 24 H 1.08997 * 109.47066 * 265.66311 * 1 2 3 25 25 H 1.09001 * 109.47213 * 25.66563 * 1 2 3 26 26 H 1.09004 * 109.47014 * 145.66587 * 1 2 3 27 27 H 0.96992 * 119.99711 * 179.97438 * 6 5 3 28 28 H 1.09005 * 109.47459 * 330.00476 * 11 2 1 29 29 H 1.09001 * 109.47812 * 209.99934 * 11 2 1 30 30 H 1.08000 * 126.35937 * 0.24921 * 13 12 11 31 31 H 1.07995 * 120.06282 * 359.97438 * 17 16 15 32 32 H 1.08002 * 119.89851 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.83892 * 179.97438 * 19 18 17 34 34 H 1.07996 * 119.94689 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7811 2.0222 -0.5754 5 6 3.3175 1.3132 0.7395 6 7 4.2042 2.2308 0.4167 7 14 3.6307 0.1820 2.1927 8 1 4.4686 -0.9638 1.7566 9 1 4.3370 0.9331 3.2614 10 1 2.3356 -0.3225 2.7154 11 6 2.1975 -1.2686 0.0006 12 6 2.4487 -1.7043 -1.4201 13 6 3.5612 -1.4645 -2.1373 14 8 3.3799 -2.0156 -3.3540 15 6 2.1618 -2.5842 -3.3675 16 6 1.5571 -3.3017 -4.5091 17 6 2.2621 -3.4353 -5.7064 18 6 1.6919 -4.1056 -6.7683 19 6 0.4233 -4.6464 -6.6501 20 6 -0.2825 -4.5190 -5.4681 21 6 0.2784 -3.8542 -4.3934 22 9 -0.4092 -3.7348 -3.2367 23 7 1.5995 -2.3942 -2.1970 24 1 -0.3633 -0.0777 1.0247 25 1 -0.3634 0.9263 -0.4451 26 1 -0.3633 -0.8486 -0.5796 27 1 5.0200 2.3200 0.9336 28 1 1.6085 -2.0282 0.5147 29 1 3.1500 -1.1381 0.5143 30 1 4.4369 -0.9294 -1.8008 31 1 3.2519 -3.0138 -5.8013 32 1 2.2369 -4.2088 -7.6950 33 1 -0.0177 -5.1698 -7.4856 34 1 -1.2717 -4.9438 -5.3824 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559522243.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:44 Heat of formation + Delta-G solvation = 16.460481 kcal Electronic energy + Delta-G solvation = -20795.186252 eV Core-core repulsion = 17416.706953 eV Total energy + Delta-G solvation = -3378.479299 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.85942 -44.26020 -39.84084 -38.02532 -35.69290 -33.88013 -33.38890 -31.65996 -30.64487 -28.31278 -27.73184 -24.99684 -24.04941 -23.32592 -22.29023 -21.92211 -19.29085 -18.71530 -18.01347 -17.72421 -17.30561 -17.19636 -16.88223 -16.53148 -15.86543 -15.68707 -15.40724 -14.98505 -14.89148 -14.52130 -14.37447 -14.10546 -13.56315 -13.47184 -13.04129 -12.81219 -12.69366 -12.59198 -12.21967 -12.20278 -12.09769 -11.73206 -11.52759 -10.75077 -10.71593 -9.87826 -9.25771 -8.91607 -8.25806 -5.66692 -0.47667 0.16945 0.75899 1.27358 1.40875 1.52980 1.58112 1.68162 2.37244 2.62807 2.81561 3.01460 3.19381 3.43848 3.70894 3.84151 3.91239 4.06506 4.25287 4.29606 4.42732 4.55025 4.63731 4.69347 4.79014 4.88276 4.94306 5.01248 5.04225 5.08880 5.17456 5.31727 5.38176 5.82617 5.86118 6.09668 6.66998 6.86064 7.50653 7.96908 8.93380 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.031060 B = 0.004851 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.258947 B = 5771.190918 C = 6215.563313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.613 5.613 3 C -0.271 4.271 4 H 0.036 0.964 5 C -0.004 4.004 6 N -0.937 5.937 7 Si 0.932 3.068 8 H -0.263 1.263 9 H -0.299 1.299 10 H -0.262 1.262 11 C 0.212 3.788 12 C -0.030 4.030 13 C -0.061 4.061 14 O -0.199 6.199 15 C 0.202 3.798 16 C -0.078 4.078 17 C -0.069 4.069 18 C -0.120 4.120 19 C -0.058 4.058 20 C -0.154 4.154 21 C 0.113 3.887 22 F -0.137 7.137 23 N -0.474 5.474 24 H 0.026 0.974 25 H 0.039 0.961 26 H 0.043 0.957 27 H 0.268 0.732 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.226 0.774 31 H 0.144 0.856 32 H 0.175 0.825 33 H 0.182 0.818 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.925 -17.307 -15.372 23.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.336 5.336 3 C -0.400 4.400 4 H 0.054 0.946 5 C -0.202 4.202 6 N -0.580 5.580 7 Si 0.759 3.241 8 H -0.190 1.190 9 H -0.227 1.227 10 H -0.186 1.186 11 C 0.086 3.914 12 C -0.153 4.153 13 C -0.132 4.132 14 O -0.086 6.086 15 C -0.001 4.001 16 C -0.080 4.080 17 C -0.089 4.089 18 C -0.137 4.137 19 C -0.076 4.076 20 C -0.173 4.173 21 C 0.093 3.907 22 F -0.116 7.116 23 N -0.204 5.204 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.243 0.757 31 H 0.162 0.838 32 H 0.192 0.808 33 H 0.199 0.801 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.422 -17.398 -15.111 23.673 hybrid contribution 1.061 0.725 1.252 1.794 sum -4.361 -16.673 -13.859 22.115 Atomic orbital electron populations 1.21130 0.82318 0.99636 0.98588 1.44127 1.02269 1.01089 1.86139 1.18619 1.06745 0.90861 1.23795 0.94603 1.25970 0.96262 0.98408 0.99583 1.69994 1.09139 1.38385 1.40453 0.86023 0.78567 0.78728 0.80758 1.18965 1.22691 1.18576 1.19631 0.96933 0.87586 0.87270 1.23059 0.91076 0.99801 1.01410 1.25175 1.03422 1.02541 0.82035 1.84409 1.34153 1.55689 1.34339 1.24186 0.81965 0.99021 0.94966 1.17652 0.94854 1.03904 0.91614 1.21401 1.00103 0.97050 0.90327 1.21594 0.96130 0.96873 0.99145 1.21739 0.93426 0.95588 0.96871 1.21478 1.02915 1.00969 0.91913 1.18081 0.89311 0.99679 0.83678 1.91552 1.78501 1.93900 1.47605 1.70628 1.31138 1.16734 1.01906 0.95532 0.94231 0.93836 0.92306 0.90873 0.91826 0.75739 0.83788 0.80752 0.80056 0.81714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.67 10.70 127.77 1.37 7.04 16 2 N -0.61 -31.23 2.45 -731.30 -1.79 -33.02 16 3 C -0.27 -15.79 9.88 84.03 0.83 -14.96 16 4 H 0.04 2.35 8.06 -2.91 -0.02 2.32 16 5 C 0.00 -0.25 5.29 84.86 0.45 0.20 16 6 N -0.94 -56.97 13.97 21.65 0.30 -56.67 16 7 Si 0.93 44.81 25.10 68.60 1.72 46.53 16 8 H -0.26 -11.71 6.68 99.48 0.66 -11.05 16 9 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 10 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 11 C 0.21 9.83 5.07 85.64 0.43 10.26 16 12 C -0.03 -1.36 6.68 41.35 0.28 -1.09 16 13 C -0.06 -2.53 12.08 66.97 0.81 -1.72 16 14 O -0.20 -7.67 10.52 -8.63 -0.09 -7.76 16 15 C 0.20 7.78 7.89 87.30 0.69 8.47 16 16 C -0.08 -2.31 5.88 -20.06 -0.12 -2.42 16 17 C -0.07 -1.43 9.71 22.52 0.22 -1.21 16 18 C -0.12 -1.46 10.03 22.24 0.22 -1.23 16 19 C -0.06 -0.61 10.04 22.32 0.22 -0.39 16 20 C -0.15 -2.60 10.01 22.28 0.22 -2.38 16 21 C 0.11 3.10 7.29 22.65 0.16 3.27 16 22 F -0.14 -4.67 15.77 44.97 0.71 -3.96 16 23 N -0.47 -20.68 9.91 -293.21 -2.91 -23.59 16 24 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.04 1.74 8.00 -2.39 -0.02 1.72 16 26 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 27 H 0.27 15.26 8.31 -92.71 -0.77 14.48 16 28 H 0.07 3.13 8.07 -2.38 -0.02 3.11 16 29 H 0.06 2.99 3.38 -2.39 -0.01 2.98 16 30 H 0.23 8.73 8.06 -2.91 -0.02 8.70 16 31 H 0.14 2.74 7.90 -2.91 -0.02 2.72 16 32 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 33 H 0.18 0.36 8.06 -2.91 -0.02 0.33 16 34 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -73.81 301.36 4.82 -69.00 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 1.08 Total: 5.64 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 5.79 Total: 3.83 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -4.40 Total: -113.28 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.09 Total: -7.76 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.71 Total: -3.96 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.72 Total: 46.53 kcal Total: -73.81 4.82 -69.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559522243.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.456 kcal (2) G-P(sol) polarization free energy of solvation -73.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds