Wall clock time and date at job start Mon Mar 30 2020 01:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37104 * 119.99842 * 2 1 4 4 H 1.07994 * 119.99791 * 204.39176 * 3 2 1 5 5 C 1.38956 * 119.99575 * 24.39744 * 3 2 1 6 6 N 1.31405 * 120.00406 * 12.64456 * 5 3 2 7 7 Si 1.86803 * 119.99491 * 192.63901 * 5 3 2 8 8 H 1.48506 * 109.46722 * 90.00154 * 7 5 3 9 9 H 1.48498 * 109.46995 * 209.99988 * 7 5 3 10 10 H 1.48490 * 109.47329 * 330.00373 * 7 5 3 11 11 C 1.34774 * 120.00182 * 180.02562 * 2 1 3 12 12 O 1.21289 * 120.00021 * 179.97438 * 11 2 1 13 13 C 1.50696 * 119.99825 * 359.97438 * 11 2 1 14 14 N 1.46503 * 109.46894 * 179.97438 * 13 11 2 15 15 C 1.36901 * 125.07173 * 264.97583 * 14 13 11 16 16 C 1.34206 * 109.92270 * 180.02562 * 15 14 13 17 17 C 1.46522 * 107.00232 * 0.23894 * 16 15 14 18 18 C 1.39634 * 133.98977 * 179.72078 * 17 16 15 19 19 C 1.36604 * 119.80045 * 180.02562 * 18 17 16 20 20 C 1.39031 * 120.50322 * 0.02562 * 19 18 17 21 21 F 1.35101 * 119.69134 * 180.02562 * 20 19 18 22 22 C 1.37948 * 120.61022 * 359.61025 * 20 19 18 23 23 C 1.37685 * 125.06254 * 85.00471 * 14 13 11 24 24 H 1.09005 * 109.46756 * 265.86096 * 1 2 3 25 25 H 1.09005 * 109.47324 * 25.85841 * 1 2 3 26 26 H 1.08998 * 109.46922 * 145.86614 * 1 2 3 27 27 H 0.96995 * 120.00414 * 180.02562 * 6 5 3 28 28 H 1.09004 * 109.47308 * 60.00048 * 13 11 2 29 29 H 1.08994 * 109.47635 * 300.00034 * 13 11 2 30 30 H 1.08004 * 125.03618 * 0.05945 * 15 14 13 31 31 H 1.08000 * 126.49652 * 179.97438 * 16 15 14 32 32 H 1.08001 * 120.10129 * 0.02562 * 18 17 16 33 33 H 1.08001 * 119.74543 * 180.02562 * 19 18 17 34 34 H 1.08000 * 120.11713 * 179.89144 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1581 1.2291 -0.3862 5 6 1.5487 2.3370 0.4971 6 7 0.4346 2.2491 1.1883 7 14 2.3236 4.0074 0.1828 8 1 1.7867 4.5721 -1.0814 9 1 2.0033 4.9213 1.3085 10 1 3.7966 3.8566 0.0713 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1671 -0.0010 13 6 1.3854 -2.4722 -0.0005 14 7 2.3375 -3.5857 -0.0018 15 6 2.7733 -4.2469 -1.1185 16 6 3.6383 -5.2120 -0.7702 17 6 3.7630 -5.1694 0.6891 18 6 4.4928 -5.9088 1.6221 19 6 4.3893 -5.6147 2.9521 20 6 3.5620 -4.5845 3.3848 21 9 3.4725 -4.3074 4.7040 22 6 2.8383 -3.8372 2.4788 23 6 2.9270 -4.1236 1.1203 24 1 -0.3633 -0.0742 1.0250 25 1 -0.3634 0.9248 -0.4482 26 1 -0.3633 -0.8506 -0.5766 27 1 0.0143 3.0516 1.5350 28 1 0.7584 -2.5298 -0.8903 29 1 0.7591 -2.5302 0.8896 30 1 2.4667 -4.0243 -2.1300 31 1 4.1431 -5.8939 -1.4385 32 1 5.1371 -6.7107 1.2932 33 1 4.9545 -6.1869 3.6729 34 1 2.1968 -3.0399 2.8239 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598386981.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:16 Heat of formation + Delta-G solvation = -2.511830 kcal Electronic energy + Delta-G solvation = -20815.060647 eV Core-core repulsion = 17435.758646 eV Total energy + Delta-G solvation = -3379.302000 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.58933 -41.10225 -38.48833 -36.50257 -34.79486 -32.54547 -31.70763 -30.31456 -28.30439 -27.17400 -26.09012 -24.26579 -22.68581 -21.50544 -20.39250 -19.20666 -17.11065 -17.01586 -16.85839 -16.34719 -15.92414 -15.32039 -14.98894 -14.87641 -14.50701 -14.06125 -13.74445 -13.62848 -13.42036 -12.97851 -12.47959 -12.38724 -12.24687 -11.68502 -11.65506 -11.41149 -11.38025 -10.99068 -10.97336 -10.77814 -10.42759 -10.39402 -9.47591 -9.13170 -8.67553 -7.87495 -7.81815 -7.40439 -6.44581 -4.01807 1.22358 1.70950 2.83332 3.08147 3.09467 3.19523 3.25248 3.65217 3.98175 4.05496 4.51675 4.72583 4.82094 4.93330 5.00239 5.13147 5.24762 5.39569 5.49354 5.56313 5.64975 5.71558 5.92508 6.07512 6.11978 6.27056 6.36092 6.56389 6.66206 6.94909 7.00229 7.02710 7.42056 7.45715 7.47859 7.99056 8.33744 9.04324 9.24880 9.78567 10.59973 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.022232 B = 0.004927 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.167479 B = 5681.869261 C = 6256.493516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.440 5.440 3 C -0.308 4.308 4 H 0.099 0.901 5 C 0.033 3.967 6 N -0.880 5.880 7 Si 0.928 3.072 8 H -0.276 1.276 9 H -0.282 1.282 10 H -0.268 1.268 11 C 0.423 3.577 12 O -0.570 6.570 13 C 0.094 3.906 14 N -0.454 5.454 15 C 0.069 3.931 16 C -0.210 4.210 17 C -0.120 4.120 18 C -0.046 4.046 19 C -0.184 4.184 20 C 0.108 3.892 21 F -0.143 7.143 22 C -0.153 4.153 23 C 0.138 3.862 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.025 0.975 27 H 0.269 0.731 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.166 0.834 31 H 0.146 0.854 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.545 -12.955 -1.807 13.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.159 5.159 3 C -0.436 4.436 4 H 0.116 0.884 5 C -0.171 4.171 6 N -0.519 5.519 7 Si 0.755 3.245 8 H -0.202 1.202 9 H -0.208 1.208 10 H -0.193 1.193 11 C 0.209 3.791 12 O -0.453 6.453 13 C -0.031 4.031 14 N -0.134 5.134 15 C -0.056 4.056 16 C -0.235 4.235 17 C -0.125 4.125 18 C -0.064 4.064 19 C -0.204 4.204 20 C 0.088 3.912 21 F -0.122 7.122 22 C -0.174 4.174 23 C 0.030 3.970 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.184 0.816 31 H 0.164 0.836 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.338 -12.508 -1.701 12.628 hybrid contribution 0.004 1.227 0.183 1.240 sum -0.334 -11.281 -1.519 11.388 Atomic orbital electron populations 1.21564 0.81123 1.00215 1.00823 1.43581 1.05466 1.04558 1.62315 1.19658 1.00745 0.83833 1.39364 0.88354 1.25370 0.96577 1.00282 0.94858 1.69970 1.19125 1.29909 1.32864 0.85889 0.79742 0.80986 0.77924 1.20236 1.20805 1.19284 1.20211 0.88568 0.84793 0.85561 1.90596 1.13397 1.86440 1.54915 1.21720 0.90744 0.85727 1.04915 1.43560 1.37688 1.27562 1.04609 1.21791 0.98469 0.94293 0.91094 1.21511 1.05359 1.04012 0.92569 1.19205 1.00856 0.98414 0.94015 1.19995 0.97281 0.98169 0.91001 1.20483 1.03014 1.00146 0.96742 1.17102 0.99688 0.97294 0.77126 1.91466 1.95240 1.93313 1.32176 1.19849 1.04795 1.02698 0.90098 1.17706 0.96422 0.95091 0.87734 0.92676 0.90264 0.95668 0.92036 0.87673 0.87997 0.81632 0.83620 0.85358 0.85200 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.20 8.44 59.85 0.51 2.71 16 2 N -0.44 -10.79 3.01 -122.19 -0.37 -11.16 16 3 C -0.31 -8.40 9.24 -14.93 -0.14 -8.54 16 4 H 0.10 2.84 7.45 -52.49 -0.39 2.45 16 5 C 0.03 0.85 5.04 -17.47 -0.09 0.76 16 6 N -0.88 -22.82 10.83 55.50 0.60 -22.22 16 7 Si 0.93 20.42 29.57 -169.99 -5.03 15.39 16 8 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 C 0.42 9.91 7.70 -10.99 -0.08 9.82 16 12 O -0.57 -15.80 16.13 5.55 0.09 -15.71 16 13 C 0.09 1.64 5.09 -5.19 -0.03 1.61 16 14 N -0.45 -7.96 2.27 -115.70 -0.26 -8.22 16 15 C 0.07 1.04 11.28 -16.71 -0.19 0.85 16 16 C -0.21 -3.02 11.08 -37.67 -0.42 -3.43 16 17 C -0.12 -1.95 6.37 -105.13 -0.67 -2.62 16 18 C -0.05 -0.64 10.05 -39.65 -0.40 -1.04 16 19 C -0.18 -2.61 9.95 -39.88 -0.40 -3.01 16 20 C 0.11 1.80 7.28 -39.39 -0.29 1.51 16 21 F -0.14 -2.38 17.25 2.25 0.04 -2.34 16 22 C -0.15 -2.77 9.97 -39.36 -0.39 -3.16 16 23 C 0.14 2.52 6.80 -83.99 -0.57 1.95 16 24 H 0.05 1.17 7.83 -51.93 -0.41 0.76 16 25 H 0.08 1.75 6.80 -51.93 -0.35 1.40 16 26 H 0.02 0.40 6.61 -51.93 -0.34 0.06 16 27 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 28 H 0.11 1.47 7.38 -51.93 -0.38 1.08 16 29 H 0.10 1.62 8.11 -51.93 -0.42 1.20 16 30 H 0.17 1.93 8.06 -52.48 -0.42 1.51 16 31 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.13 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 301.45 15.07 4.54 4.54 Total: -1.00 -32.19 301.45 -7.08 -39.27 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -3.55 Total: 3.03 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -3.15 Total: -2.59 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: -0.03 Total: -41.59 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.09 Total: -15.71 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.19 -7.08 -39.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598386981.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.762 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds