Wall clock time and date at job start Mon Mar 30 2020 01:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37104 * 119.99842 * 2 1 4 4 H 1.07994 * 119.99791 * 204.39176 * 3 2 1 5 5 C 1.38956 * 119.99575 * 24.39744 * 3 2 1 6 6 N 1.31405 * 120.00406 * 12.64456 * 5 3 2 7 7 Si 1.86803 * 119.99491 * 192.63901 * 5 3 2 8 8 H 1.48506 * 109.46722 * 90.00154 * 7 5 3 9 9 H 1.48498 * 109.46995 * 209.99988 * 7 5 3 10 10 H 1.48490 * 109.47329 * 330.00373 * 7 5 3 11 11 C 1.34774 * 120.00182 * 180.02562 * 2 1 3 12 12 O 1.21289 * 120.00021 * 179.97438 * 11 2 1 13 13 C 1.50696 * 119.99825 * 359.97438 * 11 2 1 14 14 N 1.46503 * 109.46894 * 179.97438 * 13 11 2 15 15 C 1.36901 * 125.07173 * 264.97583 * 14 13 11 16 16 C 1.34206 * 109.92270 * 180.02562 * 15 14 13 17 17 C 1.46522 * 107.00232 * 0.23894 * 16 15 14 18 18 C 1.39634 * 133.98977 * 179.72078 * 17 16 15 19 19 C 1.36604 * 119.80045 * 180.02562 * 18 17 16 20 20 C 1.39031 * 120.50322 * 0.02562 * 19 18 17 21 21 F 1.35101 * 119.69134 * 180.02562 * 20 19 18 22 22 C 1.37948 * 120.61022 * 359.61025 * 20 19 18 23 23 C 1.37685 * 125.06254 * 85.00471 * 14 13 11 24 24 H 1.09005 * 109.46756 * 265.86096 * 1 2 3 25 25 H 1.09005 * 109.47324 * 25.85841 * 1 2 3 26 26 H 1.08998 * 109.46922 * 145.86614 * 1 2 3 27 27 H 0.96995 * 120.00414 * 180.02562 * 6 5 3 28 28 H 1.09004 * 109.47308 * 60.00048 * 13 11 2 29 29 H 1.08994 * 109.47635 * 300.00034 * 13 11 2 30 30 H 1.08004 * 125.03618 * 0.05945 * 15 14 13 31 31 H 1.08000 * 126.49652 * 179.97438 * 16 15 14 32 32 H 1.08001 * 120.10129 * 0.02562 * 18 17 16 33 33 H 1.08001 * 119.74543 * 180.02562 * 19 18 17 34 34 H 1.08000 * 120.11713 * 179.89144 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1581 1.2291 -0.3862 5 6 1.5487 2.3370 0.4971 6 7 0.4346 2.2491 1.1883 7 14 2.3236 4.0074 0.1828 8 1 1.7867 4.5721 -1.0814 9 1 2.0033 4.9213 1.3085 10 1 3.7966 3.8566 0.0713 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1671 -0.0010 13 6 1.3854 -2.4722 -0.0005 14 7 2.3375 -3.5857 -0.0018 15 6 2.7733 -4.2469 -1.1185 16 6 3.6383 -5.2120 -0.7702 17 6 3.7630 -5.1694 0.6891 18 6 4.4928 -5.9088 1.6221 19 6 4.3893 -5.6147 2.9521 20 6 3.5620 -4.5845 3.3848 21 9 3.4725 -4.3074 4.7040 22 6 2.8383 -3.8372 2.4788 23 6 2.9270 -4.1236 1.1203 24 1 -0.3633 -0.0742 1.0250 25 1 -0.3634 0.9248 -0.4482 26 1 -0.3633 -0.8506 -0.5766 27 1 0.0143 3.0516 1.5350 28 1 0.7584 -2.5298 -0.8903 29 1 0.7591 -2.5302 0.8896 30 1 2.4667 -4.0243 -2.1300 31 1 4.1431 -5.8939 -1.4385 32 1 5.1371 -6.7107 1.2932 33 1 4.9545 -6.1869 3.6729 34 1 2.1968 -3.0399 2.8239 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598386981.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:15 Heat of formation + Delta-G solvation = -20.969653 kcal Electronic energy + Delta-G solvation = -20815.861038 eV Core-core repulsion = 17435.758646 eV Total energy + Delta-G solvation = -3380.102392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.88817 -42.32464 -40.27166 -37.73604 -36.70130 -34.03775 -33.45563 -31.58989 -29.50452 -28.76022 -27.71457 -26.05617 -23.90651 -22.74397 -21.73662 -20.74300 -18.99502 -18.40179 -18.15781 -17.99472 -17.14704 -16.83117 -16.57755 -16.36983 -16.04980 -15.70303 -15.12664 -15.08447 -14.51341 -14.29293 -14.00120 -13.90040 -13.61183 -13.40800 -13.19321 -13.02893 -12.77336 -12.68419 -12.40747 -12.23494 -12.18421 -11.95745 -11.06582 -10.76326 -10.45992 -9.75794 -9.12082 -8.62285 -8.40218 -6.07360 0.01246 0.50457 1.32368 1.37402 1.48495 1.63131 1.87713 1.91586 2.24186 2.78503 2.98234 3.01330 3.31083 3.64867 3.80182 3.91542 3.95522 4.04634 4.15826 4.24983 4.47442 4.54439 4.58838 4.85111 4.95927 4.99686 5.10983 5.19189 5.31842 5.38082 5.40585 5.79304 5.85958 5.99341 6.19475 6.31089 6.43509 7.08441 7.35397 7.90189 8.60901 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.022232 B = 0.004927 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.167479 B = 5681.869261 C = 6256.493516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.455 5.455 3 C -0.345 4.345 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.893 5.893 7 Si 0.988 3.012 8 H -0.261 1.261 9 H -0.274 1.274 10 H -0.280 1.280 11 C 0.416 3.584 12 O -0.623 6.623 13 C 0.107 3.893 14 N -0.467 5.467 15 C 0.053 3.947 16 C -0.203 4.203 17 C -0.136 4.136 18 C -0.036 4.036 19 C -0.182 4.182 20 C 0.096 3.904 21 F -0.149 7.149 22 C -0.184 4.184 23 C 0.105 3.895 24 H 0.044 0.956 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.275 0.725 28 H 0.148 0.852 29 H 0.113 0.887 30 H 0.197 0.803 31 H 0.181 0.819 32 H 0.170 0.830 33 H 0.162 0.838 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.573 -14.559 -2.877 14.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.175 5.175 3 C -0.473 4.473 4 H 0.085 0.915 5 C -0.201 4.201 6 N -0.531 5.531 7 Si 0.812 3.188 8 H -0.185 1.185 9 H -0.199 1.199 10 H -0.205 1.205 11 C 0.204 3.796 12 O -0.510 6.510 13 C -0.018 4.018 14 N -0.149 5.149 15 C -0.071 4.071 16 C -0.227 4.227 17 C -0.141 4.141 18 C -0.054 4.054 19 C -0.201 4.201 20 C 0.076 3.924 21 F -0.128 7.128 22 C -0.206 4.206 23 C -0.002 4.002 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.165 0.835 29 H 0.131 0.869 30 H 0.214 0.786 31 H 0.199 0.801 32 H 0.188 0.812 33 H 0.180 0.820 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.407 -14.130 -2.776 14.406 hybrid contribution 0.056 1.660 0.549 1.749 sum -0.351 -12.470 -2.227 12.672 Atomic orbital electron populations 1.21564 0.78914 1.01537 1.00907 1.43841 1.06928 1.04335 1.62363 1.19553 1.00385 0.86025 1.41359 0.91454 1.26067 0.96989 1.02914 0.94131 1.70036 1.19560 1.30949 1.32570 0.85013 0.78158 0.77066 0.78600 1.18539 1.19859 1.20471 1.21249 0.88351 0.86467 0.83487 1.90547 1.15991 1.87610 1.56803 1.21633 0.90334 0.82434 1.07391 1.43715 1.38276 1.27657 1.05249 1.22470 0.98647 0.94196 0.91750 1.21982 1.04681 1.04066 0.91984 1.19720 1.00712 0.98173 0.95543 1.20485 0.96425 0.98165 0.90315 1.20851 1.02221 0.99248 0.97817 1.17409 1.00210 0.98052 0.76722 1.91444 1.95332 1.93479 1.32503 1.19899 1.06182 1.03427 0.91089 1.18055 0.97777 0.96496 0.87902 0.93736 0.92017 0.90555 0.91519 0.83472 0.86877 0.78579 0.80131 0.81247 0.82034 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.64 8.44 127.77 1.08 5.72 16 2 N -0.46 -22.78 3.01 -658.89 -1.98 -24.76 16 3 C -0.35 -19.49 9.24 84.04 0.78 -18.71 16 4 H 0.07 4.13 7.45 -2.91 -0.02 4.10 16 5 C 0.00 0.08 5.04 84.93 0.43 0.50 16 6 N -0.89 -46.61 10.83 21.66 0.23 -46.38 16 7 Si 0.99 42.28 29.57 68.60 2.03 44.31 16 8 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 9 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 11 C 0.42 19.86 7.70 87.66 0.67 20.54 16 12 O -0.62 -35.83 16.13 -3.06 -0.05 -35.88 16 13 C 0.11 3.63 5.09 85.63 0.44 4.06 16 14 N -0.47 -15.99 2.27 -519.97 -1.18 -17.17 16 15 C 0.05 1.48 11.28 82.98 0.94 2.41 16 16 C -0.20 -5.26 11.08 23.51 0.26 -5.00 16 17 C -0.14 -4.18 6.37 -20.19 -0.13 -4.31 16 18 C -0.04 -0.89 10.05 22.22 0.22 -0.67 16 19 C -0.18 -4.80 9.95 22.08 0.22 -4.58 16 20 C 0.10 3.21 7.28 22.39 0.16 3.37 16 21 F -0.15 -5.02 17.25 44.97 0.78 -4.25 16 22 C -0.18 -6.91 9.97 22.41 0.22 -6.69 16 23 C 0.11 3.83 6.80 39.03 0.27 4.10 16 24 H 0.04 1.89 7.83 -2.38 -0.02 1.87 16 25 H 0.06 2.71 6.80 -2.38 -0.02 2.70 16 26 H 0.08 2.28 6.61 -2.39 -0.02 2.27 16 27 H 0.28 13.45 8.31 -92.71 -0.77 12.68 16 28 H 0.15 3.65 7.38 -2.38 -0.02 3.63 16 29 H 0.11 3.55 8.11 -2.39 -0.02 3.53 16 30 H 0.20 3.94 8.06 -2.91 -0.02 3.92 16 31 H 0.18 3.24 8.06 -2.91 -0.02 3.21 16 32 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 33 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 34 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -73.71 301.45 6.51 -67.20 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 1.12 Total: 16.18 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 5.56 Total: 0.75 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -2.93 Total: -88.31 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -0.05 Total: -35.88 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.78 Total: -4.25 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -73.71 6.51 -67.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598386981.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.231 kcal (2) G-P(sol) polarization free energy of solvation -73.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds