Wall clock time and date at job start Mon Mar 30 2020 01:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36983 * 119.99964 * 2 1 4 4 H 1.08004 * 119.99726 * 172.01033 * 3 2 1 5 5 C 1.38964 * 120.00427 * 352.00145 * 3 2 1 6 6 N 1.31423 * 119.99382 * 5.51963 * 5 3 2 7 7 Si 1.86795 * 120.00249 * 185.52210 * 5 3 2 8 8 H 1.48493 * 109.47278 * 59.99868 * 7 5 3 9 9 H 1.48494 * 109.47222 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46896 * 299.99872 * 7 5 3 11 11 C 1.34777 * 119.99439 * 179.97438 * 2 1 3 12 12 O 1.21680 * 119.99416 * 184.18020 * 11 2 1 13 13 C 1.46990 * 120.00481 * 4.18030 * 11 2 1 14 14 C 1.41369 * 126.48697 * 307.48023 * 13 11 2 15 15 N 1.30368 * 108.16281 * 180.26079 * 14 13 11 16 16 N 1.39912 * 109.14513 * 0.02562 * 15 14 13 17 17 C 1.46508 * 125.75350 * 179.97438 * 16 15 14 18 18 C 1.34729 * 108.48961 * 359.97438 * 16 15 14 19 19 N 1.39142 * 126.41377 * 180.02562 * 18 16 15 20 20 C 1.36454 * 127.13324 * 134.68489 * 19 18 16 21 21 N 1.30493 * 107.18114 * 179.87467 * 20 19 18 22 22 N 1.28527 * 109.95089 * 0.40567 * 21 20 19 23 23 C 1.30494 * 109.94655 * 359.74081 * 22 21 20 24 24 H 1.09000 * 109.47697 * 182.90610 * 1 2 3 25 25 H 1.09007 * 109.47004 * 302.90607 * 1 2 3 26 26 H 1.08998 * 109.47077 * 62.90309 * 1 2 3 27 27 H 0.97002 * 119.99228 * 179.97438 * 6 5 3 28 28 H 1.07999 * 125.91914 * 0.26160 * 14 13 11 29 29 H 1.08993 * 109.46751 * 270.02460 * 17 16 15 30 30 H 1.08999 * 109.46857 * 30.02499 * 17 16 15 31 31 H 1.08995 * 109.46555 * 150.02502 * 17 16 15 32 32 H 1.07998 * 126.40626 * 359.97438 * 20 19 18 33 33 H 1.08006 * 126.40810 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1499 1.1863 0.0000 4 1 3.2221 1.1908 0.1300 5 6 1.4653 2.3840 -0.1675 6 7 0.1520 2.3886 -0.2170 7 14 2.4116 3.9870 -0.3221 8 1 3.3103 3.9195 -1.5023 9 1 1.4564 5.1115 -0.4904 10 1 3.2205 4.2046 0.9041 11 6 2.1388 -1.1673 0.0005 12 8 3.3531 -1.1686 0.0773 13 6 1.4067 -2.4386 -0.0917 14 6 0.3330 -2.8518 0.7298 15 7 -0.0434 -4.0377 0.3405 16 7 0.7558 -4.4432 -0.7340 17 6 0.6459 -5.7167 -1.4499 18 6 1.6434 -3.4649 -0.9992 19 7 2.6150 -3.4790 -1.9951 20 6 2.9211 -2.4703 -2.8616 21 7 3.8896 -2.8981 -3.6245 22 7 4.2029 -4.1021 -3.3017 23 6 3.4552 -4.5065 -2.3117 24 1 -0.3634 -1.0263 0.0521 25 1 -0.3633 0.5583 0.8628 26 1 -0.3633 0.4681 -0.9149 27 1 -0.3259 3.2247 -0.3336 28 1 -0.1004 -2.2836 1.5395 29 1 1.2843 -6.4589 -0.9708 30 1 -0.3889 -6.0583 -1.4269 31 1 0.9606 -5.5801 -2.4844 32 1 2.4509 -1.4991 -2.9065 33 1 3.4944 -5.4735 -1.8322 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598387692.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:35 Heat of formation + Delta-G solvation = 144.824199 kcal Electronic energy + Delta-G solvation = -21564.278808 eV Core-core repulsion = 18243.578490 eV Total energy + Delta-G solvation = -3320.700318 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.46584 -42.49711 -39.99897 -36.78367 -36.20171 -34.55217 -33.47799 -31.85386 -30.78968 -28.87943 -27.75019 -26.41770 -25.03905 -23.87504 -22.97550 -22.09045 -21.13683 -19.28006 -18.82958 -18.04811 -17.47577 -16.98048 -16.57653 -16.57123 -16.00115 -15.90828 -15.76380 -15.37657 -14.96453 -14.56008 -13.86274 -13.73476 -13.49424 -13.39790 -12.98678 -12.78967 -12.73079 -12.56521 -12.29891 -12.14301 -12.07051 -11.71992 -11.02870 -10.70056 -10.58549 -10.46513 -9.92128 -9.69966 -8.27700 -5.91617 -0.19061 0.55026 0.77735 1.09849 1.43133 1.43825 1.52237 1.61965 1.63394 2.09432 2.27323 2.93354 3.14445 3.34595 3.38036 3.46792 3.71647 4.00550 4.04942 4.22709 4.27566 4.34756 4.54331 4.57341 4.68650 4.84095 5.07274 5.21381 5.27138 5.43949 5.52796 5.85529 6.02313 6.24052 6.45050 7.13240 7.38546 7.43286 7.98630 8.62945 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.006425 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.104428 B = 4356.942377 C = 5310.296691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.440 5.440 3 C -0.338 4.338 4 H 0.078 0.922 5 C 0.003 3.997 6 N -0.888 5.888 7 Si 0.989 3.011 8 H -0.276 1.276 9 H -0.267 1.267 10 H -0.272 1.272 11 C 0.495 3.505 12 O -0.635 6.635 13 C -0.242 4.242 14 C 0.090 3.910 15 N -0.262 5.262 16 N -0.347 5.347 17 C 0.078 3.922 18 C 0.306 3.694 19 N -0.413 5.413 20 C 0.199 3.801 21 N -0.318 5.318 22 N -0.316 5.316 23 C 0.177 3.823 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.274 0.726 28 H 0.218 0.782 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.215 0.785 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.938 -13.806 -1.115 15.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.156 5.156 3 C -0.465 4.465 4 H 0.096 0.904 5 C -0.199 4.199 6 N -0.527 5.527 7 Si 0.812 3.188 8 H -0.201 1.201 9 H -0.192 1.192 10 H -0.198 1.198 11 C 0.283 3.717 12 O -0.524 6.524 13 C -0.259 4.259 14 C -0.096 4.096 15 N -0.084 5.084 16 N -0.131 5.131 17 C -0.060 4.060 18 C 0.083 3.917 19 N -0.103 5.103 20 C -0.089 4.089 21 N -0.154 5.154 22 N -0.152 5.152 23 C -0.109 4.109 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.234 0.766 29 H 0.131 0.869 30 H 0.139 0.861 31 H 0.113 0.887 32 H 0.231 0.769 33 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -5.289 -14.752 -2.116 15.813 hybrid contribution 0.064 1.910 0.900 2.112 sum -5.225 -12.842 -1.216 13.917 Atomic orbital electron populations 1.21859 0.78442 0.98649 1.03182 1.43780 1.07244 1.04269 1.60341 1.19683 0.93278 0.83829 1.49756 0.90416 1.25997 0.96718 1.01903 0.95266 1.70243 1.06496 1.28581 1.47381 0.85060 0.77933 0.76922 0.78872 1.20098 1.19152 1.19769 1.17222 0.86284 0.82978 0.85171 1.90628 1.15508 1.87551 1.58757 1.20041 1.05615 0.97554 1.02724 1.24200 0.93388 0.92604 0.99373 1.77218 1.15041 1.14385 1.01737 1.48787 1.22565 1.15287 1.26440 1.22579 1.07750 0.79568 0.96153 1.17360 0.90095 0.92583 0.91698 1.43232 1.27017 1.14723 1.25362 1.26878 0.97390 0.96077 0.88590 1.74192 1.11974 1.05371 1.23853 1.74096 1.22241 1.05283 1.13605 1.27658 0.89705 0.96468 0.97110 0.91815 0.92333 0.92630 0.91562 0.76582 0.86910 0.86093 0.88709 0.76887 0.71694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.15 8.60 127.77 1.10 6.25 16 2 N -0.44 -21.86 3.02 -663.07 -2.00 -23.86 16 3 C -0.34 -18.52 9.55 84.06 0.80 -17.71 16 4 H 0.08 4.61 7.18 -2.91 -0.02 4.59 16 5 C 0.00 0.17 5.46 84.93 0.46 0.63 16 6 N -0.89 -43.99 9.47 21.67 0.21 -43.78 16 7 Si 0.99 41.36 29.56 68.60 2.03 43.39 16 8 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 9 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 11 C 0.49 23.69 6.82 86.54 0.59 24.28 16 12 O -0.64 -35.88 16.70 -4.28 -0.07 -35.95 16 13 C -0.24 -8.91 5.11 -20.02 -0.10 -9.01 16 14 C 0.09 2.64 9.66 85.68 0.83 3.47 16 15 N -0.26 -6.82 12.48 -56.26 -0.70 -7.52 16 16 N -0.35 -8.09 3.99 -364.64 -1.46 -9.55 16 17 C 0.08 0.91 10.71 127.77 1.37 2.28 16 18 C 0.31 9.44 7.22 132.28 0.95 10.39 16 19 N -0.41 -12.95 2.88 -357.86 -1.03 -13.98 16 20 C 0.20 7.26 12.05 179.81 2.17 9.43 16 21 N -0.32 -12.15 12.19 -59.41 -0.72 -12.87 16 22 N -0.32 -10.67 12.19 -59.40 -0.72 -11.39 16 23 C 0.18 4.64 11.44 179.81 2.06 6.70 16 24 H 0.06 2.22 4.16 -2.39 -0.01 2.21 16 25 H 0.06 2.59 7.21 -2.38 -0.02 2.58 16 26 H 0.06 2.53 6.90 -2.39 -0.02 2.51 16 27 H 0.27 12.78 8.31 -92.71 -0.77 12.01 16 28 H 0.22 5.40 7.67 -2.91 -0.02 5.38 16 29 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.00 7.51 -2.39 -0.02 0.98 16 32 H 0.21 7.93 8.06 -2.91 -0.02 7.90 16 33 H 0.27 3.79 8.03 -2.91 -0.02 3.77 16 Total: -1.00 -73.47 291.72 6.91 -66.56 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 1.16 Total: 12.25 kcal Atomic # 6 Polarization: 26.48 SS G_CDS: 10.23 Total: 36.71 kcal Atomic # 7 Polarization: -116.52 SS G_CDS: -6.44 Total: -122.96 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.07 Total: -35.95 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -73.47 6.91 -66.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598387692.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.381 kcal (2) G-P(sol) polarization free energy of solvation -73.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds