Wall clock time and date at job start Mon Mar 30 2020 01:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36833 * 120.00209 * 2 1 4 4 H 1.08001 * 119.99928 * 210.72377 * 3 2 1 5 5 C 1.39019 * 119.99812 * 30.73147 * 3 2 1 6 6 N 1.31389 * 120.00018 * 211.91605 * 5 3 2 7 7 Si 1.86795 * 120.00298 * 31.91945 * 5 3 2 8 8 H 1.48499 * 109.47373 * 95.10721 * 7 5 3 9 9 H 1.48507 * 109.47238 * 215.11315 * 7 5 3 10 10 H 1.48500 * 109.47055 * 335.10806 * 7 5 3 11 11 C 1.34778 * 119.99991 * 180.02562 * 2 1 3 12 12 O 1.21760 * 120.00014 * 183.09272 * 11 2 1 13 13 C 1.46458 * 119.99764 * 3.08884 * 11 2 1 14 14 C 1.38176 * 126.01450 * 356.08001 * 13 11 2 15 15 C 1.39335 * 107.43106 * 179.70312 * 14 13 11 16 16 C 1.37819 * 107.66935 * 0.42264 * 15 14 13 17 17 C 1.47882 * 125.81499 * 179.83971 * 16 15 14 18 18 N 1.34221 * 126.70400 * 179.37498 * 17 16 15 19 19 N 1.28977 * 107.24915 * 180.25921 * 18 17 16 20 20 N 1.28716 * 109.00408 * 0.02562 * 19 18 17 21 21 H 0.96994 * 125.32015 * 179.97438 * 20 19 18 22 22 N 1.28872 * 109.36915 * 359.97438 * 20 19 18 23 23 N 1.36453 * 108.36587 * 359.57127 * 16 15 14 24 24 C 1.46499 * 125.71954 * 180.23614 * 23 16 15 25 25 H 1.08996 * 109.46914 * 242.11581 * 1 2 3 26 26 H 1.09007 * 109.46634 * 2.11404 * 1 2 3 27 27 H 1.08994 * 109.47053 * 122.11105 * 1 2 3 28 28 H 0.96999 * 120.00077 * 179.97438 * 6 5 3 29 29 H 1.07998 * 126.28377 * 0.02562 * 14 13 11 30 30 H 1.07998 * 126.16518 * 180.27975 * 15 14 13 31 31 H 1.09006 * 109.46334 * 89.41871 * 24 23 16 32 32 H 1.09002 * 109.47677 * 209.40984 * 24 23 16 33 33 H 1.09000 * 109.47243 * 329.42063 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1850 0.0000 4 1 3.1155 1.2506 -0.4779 5 6 1.6005 2.3044 0.6152 6 7 1.8528 3.5039 0.1421 7 14 0.5048 2.1032 2.1146 8 1 1.3173 2.2656 3.3469 9 1 -0.5650 3.1329 2.0877 10 1 -0.1092 0.7512 2.1012 11 6 2.1389 -1.1672 -0.0005 12 8 3.3552 -1.1680 0.0564 13 6 1.4081 -2.4346 -0.0694 14 6 0.0343 -2.5818 -0.0612 15 6 -0.2400 -3.9450 -0.1487 16 6 0.9651 -4.6118 -0.1994 17 6 1.1401 -6.0772 -0.2929 18 7 2.3033 -6.7439 -0.3551 19 7 2.0206 -7.9999 -0.4329 20 7 0.7415 -8.1431 -0.4225 21 1 0.2716 -8.9902 -0.4711 22 7 0.1825 -6.9850 -0.3375 23 7 1.9692 -3.6889 -0.1547 24 6 3.4039 -3.9835 -0.1907 25 1 -0.3633 -0.4806 0.9083 26 1 -0.3633 1.0271 -0.0379 27 1 -0.3633 -0.5462 -0.8704 28 1 1.4696 4.2849 0.5712 29 1 -0.6934 -1.7859 -0.0033 30 1 -1.2203 -4.3978 -0.1703 31 1 3.7447 -4.0033 -1.2259 32 1 3.9470 -3.2126 0.3559 33 1 3.5872 -4.9538 0.2709 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604708674.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:52 Heat of formation + Delta-G solvation = 181.646143 kcal Electronic energy + Delta-G solvation = -20963.480056 eV Core-core repulsion = 17644.376457 eV Total energy + Delta-G solvation = -3319.103599 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.52517 -40.99210 -38.19718 -35.06214 -34.46454 -33.42266 -32.72473 -31.93343 -29.21123 -27.00976 -25.96327 -25.50348 -24.67862 -23.64038 -21.18394 -20.11735 -19.30005 -18.64099 -17.30187 -17.25585 -16.56617 -15.67412 -15.25406 -15.11256 -14.48377 -14.20344 -13.94289 -13.46660 -13.03509 -12.93261 -12.64142 -12.42381 -12.27537 -12.14691 -12.08350 -11.68622 -11.48593 -11.15254 -11.05468 -10.86578 -10.69680 -10.30845 -9.83566 -9.10693 -8.68002 -8.45718 -7.90528 -7.73655 -6.58257 -3.96013 0.85388 1.33238 2.06015 2.35988 2.90415 3.08133 3.18745 3.21018 3.27633 3.72790 4.08701 4.14011 4.20902 4.45673 4.94936 5.17882 5.22624 5.36963 5.45497 5.66317 5.67709 5.78776 5.91348 6.10525 6.13005 6.21150 6.29480 6.35586 6.44304 6.97265 7.25248 7.34289 7.44427 8.03784 8.16128 8.39817 8.86062 9.20688 9.68895 10.52170 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.040442 B = 0.004464 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.190826 B = 6270.427008 C = 6699.213585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.433 5.433 3 C -0.321 4.321 4 H 0.111 0.889 5 C 0.067 3.933 6 N -0.839 5.839 7 Si 0.854 3.146 8 H -0.278 1.278 9 H -0.281 1.281 10 H -0.246 1.246 11 C 0.505 3.495 12 O -0.578 6.578 13 C 0.031 3.969 14 C -0.199 4.199 15 C -0.136 4.136 16 C 0.057 3.943 17 C 0.262 3.738 18 N -0.280 5.280 19 N -0.052 5.052 20 N -0.230 5.230 21 H 0.475 0.525 22 N -0.291 5.291 23 N -0.390 5.390 24 C 0.064 3.936 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.277 0.723 29 H 0.172 0.828 30 H 0.146 0.854 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.503 -18.268 -0.265 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.151 5.151 3 C -0.448 4.448 4 H 0.128 0.872 5 C -0.142 4.142 6 N -0.473 5.473 7 Si 0.678 3.322 8 H -0.204 1.204 9 H -0.206 1.206 10 H -0.170 1.170 11 C 0.295 3.705 12 O -0.463 6.463 13 C -0.088 4.088 14 C -0.223 4.223 15 C -0.165 4.165 16 C -0.060 4.060 17 C -0.017 4.017 18 N -0.153 5.153 19 N -0.047 5.047 20 N -0.076 5.076 21 H 0.329 0.671 22 N -0.143 5.143 23 N -0.063 5.063 24 C -0.077 4.077 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.189 0.811 30 H 0.164 0.836 31 H 0.092 0.908 32 H 0.129 0.871 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.144 -18.664 -0.303 19.651 hybrid contribution -1.099 -0.155 0.809 1.373 sum -7.243 -18.819 0.506 20.171 Atomic orbital electron populations 1.22796 0.82806 1.02622 1.00541 1.43319 1.04552 1.04901 1.62329 1.19062 1.06451 0.83168 1.36069 0.87185 1.25323 0.96953 0.94492 0.97392 1.69889 1.42073 0.98771 1.36544 0.87419 0.80425 0.79764 0.84590 1.20380 1.20622 1.16978 1.16766 0.86900 0.81783 0.85059 1.90645 1.13105 1.86437 1.56125 1.20840 0.92684 0.85618 1.09683 1.22370 0.94105 0.96965 1.08861 1.21028 0.95534 0.93276 1.06657 1.16877 0.88774 0.82196 1.18112 1.22509 0.84711 0.94098 1.00387 1.76184 1.23984 0.96289 1.18880 1.78839 0.97462 1.13677 1.14702 1.47689 1.04414 1.09208 1.46282 0.67138 1.75007 1.25224 0.90973 1.23101 1.43768 1.06602 1.04289 1.51602 1.22439 0.77007 1.04038 1.04215 0.91746 0.90922 0.91610 0.91261 0.81063 0.83611 0.90811 0.87122 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.06 6.34 59.85 0.38 1.44 16 2 N -0.43 -10.37 2.66 -123.78 -0.33 -10.70 16 3 C -0.32 -8.82 9.37 -15.03 -0.14 -8.96 16 4 H 0.11 3.40 7.80 -52.49 -0.41 2.99 16 5 C 0.07 1.78 4.89 -17.45 -0.09 1.69 16 6 N -0.84 -23.11 13.96 55.50 0.77 -22.34 16 7 Si 0.85 19.04 26.40 -169.99 -4.49 14.55 16 8 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.25 -5.01 4.70 56.52 0.27 -4.74 16 11 C 0.50 12.03 7.59 -12.95 -0.10 11.93 16 12 O -0.58 -15.38 14.40 5.14 0.07 -15.31 16 13 C 0.03 0.62 6.82 -81.95 -0.56 0.06 16 14 C -0.20 -3.30 8.75 -39.20 -0.34 -3.64 16 15 C -0.14 -2.05 10.79 -39.33 -0.42 -2.47 16 16 C 0.06 0.93 6.87 -82.02 -0.56 0.37 16 17 C 0.26 3.82 8.03 -156.23 -1.26 2.56 16 18 N -0.28 -4.02 10.53 32.08 0.34 -3.68 16 19 N -0.05 -0.60 13.46 60.35 0.81 0.21 16 20 N -0.23 -2.02 7.90 60.35 0.48 -1.54 16 21 H 0.47 1.63 8.96 -340.34 -3.05 -1.42 16 22 N -0.29 -3.47 12.39 32.10 0.40 -3.07 16 23 N -0.39 -7.07 3.19 -115.74 -0.37 -7.44 16 24 C 0.06 1.06 10.19 59.85 0.61 1.67 16 25 H 0.06 1.12 5.25 -51.93 -0.27 0.85 16 26 H 0.07 1.40 5.47 -51.92 -0.28 1.12 16 27 H 0.07 1.07 6.21 -51.93 -0.32 0.75 16 28 H 0.28 7.01 8.31 -40.82 -0.34 6.68 16 29 H 0.17 2.50 4.00 -52.49 -0.21 2.29 16 30 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.11 2.04 6.18 -51.93 -0.32 1.72 16 33 H 0.09 1.33 6.43 -51.93 -0.33 0.99 16 LS Contribution 278.25 15.07 4.19 4.19 Total: -1.00 -32.95 278.25 -5.92 -38.87 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -5.32 Total: 1.61 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -2.48 Total: 4.65 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 2.10 Total: -48.56 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.07 Total: -15.31 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.49 Total: 14.55 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.95 -5.92 -38.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604708674.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.516 kcal (2) G-P(sol) polarization free energy of solvation -32.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds