Wall clock time and date at job start Mon Mar 30 2020 01:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36833 * 120.00209 * 2 1 4 4 H 1.08001 * 119.99928 * 210.72377 * 3 2 1 5 5 C 1.39019 * 119.99812 * 30.73147 * 3 2 1 6 6 N 1.31389 * 120.00018 * 211.91605 * 5 3 2 7 7 Si 1.86795 * 120.00298 * 31.91945 * 5 3 2 8 8 H 1.48499 * 109.47373 * 95.10721 * 7 5 3 9 9 H 1.48507 * 109.47238 * 215.11315 * 7 5 3 10 10 H 1.48500 * 109.47055 * 335.10806 * 7 5 3 11 11 C 1.34778 * 119.99991 * 180.02562 * 2 1 3 12 12 O 1.21760 * 120.00014 * 183.09272 * 11 2 1 13 13 C 1.46458 * 119.99764 * 3.08884 * 11 2 1 14 14 C 1.38176 * 126.01450 * 356.08001 * 13 11 2 15 15 C 1.39335 * 107.43106 * 179.70312 * 14 13 11 16 16 C 1.37819 * 107.66935 * 0.42264 * 15 14 13 17 17 C 1.47882 * 125.81499 * 179.83971 * 16 15 14 18 18 N 1.34221 * 126.70400 * 179.37498 * 17 16 15 19 19 N 1.28977 * 107.24915 * 180.25921 * 18 17 16 20 20 N 1.28716 * 109.00408 * 0.02562 * 19 18 17 21 21 H 0.96994 * 125.32015 * 179.97438 * 20 19 18 22 22 N 1.28872 * 109.36915 * 359.97438 * 20 19 18 23 23 N 1.36453 * 108.36587 * 359.57127 * 16 15 14 24 24 C 1.46499 * 125.71954 * 180.23614 * 23 16 15 25 25 H 1.08996 * 109.46914 * 242.11581 * 1 2 3 26 26 H 1.09007 * 109.46634 * 2.11404 * 1 2 3 27 27 H 1.08994 * 109.47053 * 122.11105 * 1 2 3 28 28 H 0.96999 * 120.00077 * 179.97438 * 6 5 3 29 29 H 1.07998 * 126.28377 * 0.02562 * 14 13 11 30 30 H 1.07998 * 126.16518 * 180.27975 * 15 14 13 31 31 H 1.09006 * 109.46334 * 89.41871 * 24 23 16 32 32 H 1.09002 * 109.47677 * 209.40984 * 24 23 16 33 33 H 1.09000 * 109.47243 * 329.42063 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1850 0.0000 4 1 3.1155 1.2506 -0.4779 5 6 1.6005 2.3044 0.6152 6 7 1.8528 3.5039 0.1421 7 14 0.5048 2.1032 2.1146 8 1 1.3173 2.2656 3.3469 9 1 -0.5650 3.1329 2.0877 10 1 -0.1092 0.7512 2.1012 11 6 2.1389 -1.1672 -0.0005 12 8 3.3552 -1.1680 0.0564 13 6 1.4081 -2.4346 -0.0694 14 6 0.0343 -2.5818 -0.0612 15 6 -0.2400 -3.9450 -0.1487 16 6 0.9651 -4.6118 -0.1994 17 6 1.1401 -6.0772 -0.2929 18 7 2.3033 -6.7439 -0.3551 19 7 2.0206 -7.9999 -0.4329 20 7 0.7415 -8.1431 -0.4225 21 1 0.2716 -8.9902 -0.4711 22 7 0.1825 -6.9850 -0.3375 23 7 1.9692 -3.6889 -0.1547 24 6 3.4039 -3.9835 -0.1907 25 1 -0.3633 -0.4806 0.9083 26 1 -0.3633 1.0271 -0.0379 27 1 -0.3633 -0.5462 -0.8704 28 1 1.4696 4.2849 0.5712 29 1 -0.6934 -1.7859 -0.0033 30 1 -1.2203 -4.3978 -0.1703 31 1 3.7447 -4.0033 -1.2259 32 1 3.9470 -3.2126 0.3559 33 1 3.5872 -4.9538 0.2709 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604708674.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:51 Heat of formation + Delta-G solvation = 156.541090 kcal Electronic energy + Delta-G solvation = -20964.568693 eV Core-core repulsion = 17644.376457 eV Total energy + Delta-G solvation = -3320.192235 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.48540 -42.36710 -39.94662 -36.90173 -35.45362 -34.52144 -34.36306 -33.52599 -30.60705 -28.55122 -27.44067 -27.09576 -25.64981 -25.00138 -22.59126 -21.42651 -20.49581 -19.91539 -19.19140 -18.20774 -18.00521 -17.48665 -16.77180 -16.59499 -15.95244 -15.59938 -15.43639 -14.91371 -14.60380 -14.31432 -14.18852 -13.99168 -13.94478 -13.40704 -13.28618 -13.00822 -12.79808 -12.59673 -12.45718 -12.16990 -11.93511 -11.86729 -11.52787 -11.01044 -10.50698 -9.89678 -9.68112 -9.07122 -8.58956 -6.04601 -0.16661 0.21453 1.00651 1.23021 1.32265 1.45219 1.51120 1.72300 1.99303 2.21186 2.40877 2.63227 2.76947 3.05325 3.16997 3.85673 3.97663 4.06348 4.29853 4.35721 4.41750 4.46279 4.55437 4.68299 4.76852 4.87556 5.10098 5.16142 5.45067 5.60834 5.74958 5.94735 6.01636 6.08296 6.51383 6.90135 7.06533 7.25276 7.82301 8.57036 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.040442 B = 0.004464 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.190826 B = 6270.427008 C = 6699.213585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.446 5.446 3 C -0.348 4.348 4 H 0.048 0.952 5 C 0.027 3.973 6 N -0.886 5.886 7 Si 0.924 3.076 8 H -0.293 1.293 9 H -0.262 1.262 10 H -0.209 1.209 11 C 0.503 3.497 12 O -0.624 6.624 13 C -0.017 4.017 14 C -0.171 4.171 15 C -0.131 4.131 16 C 0.069 3.931 17 C 0.240 3.760 18 N -0.304 5.304 19 N -0.052 5.052 20 N -0.193 5.193 21 H 0.497 0.503 22 N -0.274 5.274 23 N -0.400 5.400 24 C 0.070 3.930 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.284 0.716 29 H 0.196 0.804 30 H 0.183 0.817 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.298 -21.418 0.598 24.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.165 5.165 3 C -0.476 4.476 4 H 0.066 0.934 5 C -0.178 4.178 6 N -0.521 5.521 7 Si 0.745 3.255 8 H -0.220 1.220 9 H -0.187 1.187 10 H -0.132 1.132 11 C 0.295 3.705 12 O -0.512 6.512 13 C -0.135 4.135 14 C -0.196 4.196 15 C -0.159 4.159 16 C -0.049 4.049 17 C -0.040 4.040 18 N -0.177 5.177 19 N -0.047 5.047 20 N -0.046 5.046 21 H 0.357 0.643 22 N -0.128 5.128 23 N -0.073 5.073 24 C -0.071 4.071 25 H 0.109 0.891 26 H 0.088 0.912 27 H 0.115 0.885 28 H 0.094 0.906 29 H 0.212 0.788 30 H 0.200 0.800 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.971 -21.828 0.542 24.004 hybrid contribution 0.115 0.520 0.433 0.687 sum -9.856 -21.308 0.975 23.497 Atomic orbital electron populations 1.23082 0.79614 1.03390 1.03205 1.43347 1.06478 1.03649 1.62986 1.18601 1.05454 0.85623 1.37883 0.93366 1.26067 0.98857 0.93444 0.99471 1.69958 1.44252 0.99867 1.38057 0.86341 0.78648 0.82084 0.78462 1.22003 1.18660 1.13169 1.17403 0.86661 0.83291 0.83145 1.90606 1.15435 1.87525 1.57630 1.20321 0.93783 0.84508 1.14853 1.22668 0.92606 0.98478 1.05840 1.21412 0.96522 0.92272 1.05668 1.17314 0.88711 0.82965 1.15905 1.22357 0.85406 0.93796 1.02391 1.76174 1.24610 0.97188 1.19720 1.78809 0.98337 1.12627 1.14888 1.47783 1.03801 1.09590 1.43377 0.64286 1.74959 1.24604 0.91299 1.21930 1.43868 1.07156 1.04331 1.51942 1.22326 0.76891 1.03794 1.04051 0.89097 0.91208 0.88534 0.90572 0.78768 0.79952 0.90670 0.89728 0.87642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.73 6.34 127.77 0.81 2.54 16 2 N -0.45 -21.75 2.66 -663.70 -1.77 -23.52 16 3 C -0.35 -20.26 9.37 84.10 0.79 -19.48 16 4 H 0.05 3.30 7.80 -2.91 -0.02 3.28 16 5 C 0.03 1.48 4.89 84.95 0.42 1.89 16 6 N -0.89 -50.81 13.96 21.68 0.30 -50.50 16 7 Si 0.92 38.96 26.40 68.60 1.81 40.77 16 8 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 9 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 10 H -0.21 -7.52 4.70 99.48 0.47 -7.05 16 11 C 0.50 24.72 7.59 86.38 0.66 25.37 16 12 O -0.62 -35.49 14.40 -4.54 -0.07 -35.56 16 13 C -0.02 -0.66 6.82 40.35 0.28 -0.39 16 14 C -0.17 -5.05 8.75 22.52 0.20 -4.86 16 15 C -0.13 -3.35 10.79 22.43 0.24 -3.11 16 16 C 0.07 2.03 6.87 40.88 0.28 2.32 16 17 C 0.24 6.24 8.03 137.09 1.10 7.34 16 18 N -0.30 -8.03 10.53 -52.41 -0.55 -8.58 16 19 N -0.05 -1.05 13.46 37.02 0.50 -0.55 16 20 N -0.19 -2.60 7.90 37.02 0.29 -2.31 16 21 H 0.50 1.16 8.96 -347.52 -3.11 -1.96 16 22 N -0.27 -5.37 12.39 -52.36 -0.65 -6.02 16 23 N -0.40 -14.17 3.19 -520.08 -1.66 -15.83 16 24 C 0.07 2.39 10.19 127.77 1.30 3.70 16 25 H 0.09 2.74 5.25 -2.39 -0.01 2.73 16 26 H 0.07 2.53 5.47 -2.38 -0.01 2.52 16 27 H 0.10 2.82 6.21 -2.39 -0.01 2.81 16 28 H 0.28 14.79 8.31 -92.71 -0.77 14.02 16 29 H 0.20 4.69 4.00 -2.91 -0.01 4.67 16 30 H 0.18 3.31 8.06 -2.91 -0.02 3.29 16 31 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 32 H 0.08 3.33 6.18 -2.39 -0.01 3.31 16 33 H 0.11 3.15 6.43 -2.39 -0.02 3.13 16 Total: -1.00 -77.60 278.25 2.13 -75.47 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -2.15 Total: 11.30 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 6.07 Total: 15.32 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -3.53 Total: -107.31 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.07 Total: -35.56 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 1.81 Total: 40.77 kcal Total: -77.60 2.13 -75.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604708674.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.014 kcal (2) G-P(sol) polarization free energy of solvation -77.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds