Wall clock time and date at job start Mon Mar 30 2020 01:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34843 * 125.53211 * 2 1 4 4 C 1.36560 * 108.61599 * 179.97438 * 3 2 1 5 5 C 1.48500 * 126.28266 * 179.97438 * 4 3 2 6 6 N 1.34033 * 126.67503 * 359.69452 * 5 4 3 7 7 N 1.28981 * 107.27170 * 179.86706 * 6 5 4 8 8 N 1.28729 * 108.94056 * 0.39691 * 7 6 5 9 9 H 0.97004 * 125.34200 * 179.76437 * 8 7 6 10 10 N 1.28870 * 109.31243 * 359.74939 * 8 7 6 11 11 C 1.40807 * 107.43052 * 359.78515 * 4 3 2 12 12 C 1.36672 * 107.05549 * 0.34946 * 11 4 3 13 13 C 1.46723 * 126.02300 * 179.90968 * 12 11 4 14 14 O 1.21691 * 119.99439 * 182.85366 * 13 12 11 15 15 N 1.34771 * 120.00028 * 2.85690 * 13 12 11 16 16 C 1.46503 * 119.99858 * 174.88592 * 15 13 12 17 17 C 1.50696 * 109.46983 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00288 * 0.02562 * 17 16 15 19 19 C 1.37885 * 120.00070 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99569 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00125 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47182 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47161 * 119.99944 * 21 19 17 24 24 H 1.48496 * 109.46896 * 240.00005 * 21 19 17 25 25 H 1.09006 * 109.47539 * 265.09089 * 1 2 3 26 26 H 1.09004 * 109.46595 * 25.07893 * 1 2 3 27 27 H 1.08990 * 109.47550 * 145.08485 * 1 2 3 28 28 H 1.07995 * 125.69005 * 359.97438 * 3 2 1 29 29 H 1.08002 * 126.46954 * 180.25395 * 11 4 3 30 30 H 0.97000 * 120.00121 * 354.88939 * 15 13 12 31 31 H 1.09006 * 109.47346 * 299.99922 * 16 15 13 32 32 H 1.08992 * 109.47348 * 59.99974 * 16 15 13 33 33 H 0.97000 * 119.99610 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2486 1.0973 0.0000 4 6 3.5551 0.7000 0.0006 5 6 4.7442 1.5896 0.0002 6 7 4.7413 2.9299 -0.0064 7 7 5.9720 3.3156 -0.0012 8 7 6.7349 2.2786 -0.0002 9 1 7.7047 2.2955 0.0002 10 7 6.0077 1.2146 0.0007 11 6 3.5678 -0.7080 0.0060 12 6 2.2648 -1.1206 0.0006 13 6 1.8004 -2.5124 0.0015 14 8 0.6096 -2.7564 -0.0563 15 7 2.6926 -3.5204 0.0663 16 6 2.2267 -4.9047 0.1803 17 6 3.4139 -5.8313 0.2351 18 1 4.4153 -5.4293 0.1901 19 6 3.2217 -7.1925 0.3428 20 7 2.0023 -7.6820 0.3982 21 14 4.6933 -8.3411 0.4101 22 1 5.9453 -7.5467 0.3301 23 1 4.6696 -9.1017 1.6853 24 1 4.6346 -9.2881 -0.7322 25 1 -0.3634 -0.0879 1.0239 26 1 -0.3633 0.9308 -0.4356 27 1 -0.3634 -0.8426 -0.5881 28 1 1.9010 2.1198 -0.0004 29 1 4.4420 -1.3421 0.0116 30 1 3.6432 -3.3294 0.0376 31 1 1.6371 -5.0160 1.0904 32 1 1.6111 -5.1532 -0.6841 33 1 1.8671 -8.6395 0.4744 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609477850.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:54 Heat of formation + Delta-G solvation = 132.103945 kcal Electronic energy + Delta-G solvation = -20025.123442 eV Core-core repulsion = 16703.871533 eV Total energy + Delta-G solvation = -3321.251909 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.41604 -41.43753 -38.33334 -34.62120 -34.29229 -33.75902 -32.58754 -31.90662 -29.64987 -27.09816 -26.80721 -24.66198 -23.77930 -23.15834 -21.36595 -20.33715 -19.55734 -18.79738 -17.73088 -17.12421 -16.31245 -15.55019 -15.32774 -15.12967 -14.63477 -14.26423 -14.03986 -13.84474 -13.49570 -12.90232 -12.71254 -12.53191 -12.24154 -12.07740 -11.93080 -11.83981 -11.37860 -11.09945 -10.96927 -10.95808 -10.91058 -10.33091 -9.40867 -9.30757 -8.77399 -8.64852 -8.25749 -7.86537 -6.18720 -4.25319 1.01650 1.55351 1.77813 2.20657 2.73161 3.11714 3.23503 3.30867 3.34124 3.78348 3.87566 4.12535 4.21358 4.36744 4.85569 4.97066 5.18078 5.25235 5.31614 5.34630 5.45120 5.54399 5.69967 5.91793 6.16011 6.34623 6.58451 6.89571 7.10375 7.26215 7.35508 7.47109 7.64533 7.93444 8.16857 8.54817 8.72791 8.98815 9.41053 10.91575 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.018781 B = 0.004029 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.549105 B = 6947.682291 C = 8414.889313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.404 5.404 3 C 0.067 3.933 4 C -0.122 4.122 5 C 0.268 3.732 6 N -0.281 5.281 7 N -0.058 5.058 8 N -0.233 5.233 9 H 0.473 0.527 10 N -0.299 5.299 11 C -0.107 4.107 12 C -0.029 4.029 13 C 0.570 3.430 14 O -0.561 6.561 15 N -0.695 5.695 16 C 0.251 3.749 17 C -0.543 4.543 18 H 0.065 0.935 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.904 3.096 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.180 0.820 29 H 0.154 0.846 30 H 0.394 0.606 31 H 0.029 0.971 32 H 0.031 0.969 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.249 19.367 -0.778 20.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.075 5.075 3 C -0.075 4.075 4 C -0.132 4.132 5 C -0.012 4.012 6 N -0.155 5.155 7 N -0.053 5.053 8 N -0.079 5.079 9 H 0.327 0.673 10 N -0.151 5.151 11 C -0.133 4.133 12 C -0.142 4.142 13 C 0.355 3.645 14 O -0.443 6.443 15 N -0.342 5.342 16 C 0.131 3.869 17 C -0.581 4.581 18 H 0.083 0.917 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.126 0.874 28 H 0.197 0.803 29 H 0.171 0.829 30 H 0.228 0.772 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.197 19.483 -0.786 19.946 hybrid contribution 1.660 -0.943 0.075 1.911 sum 5.857 18.540 -0.711 19.456 Atomic orbital electron populations 1.22347 0.75258 1.05077 1.04706 1.43698 1.07367 1.04745 1.51678 1.21769 0.89155 0.92060 1.04466 1.16241 0.87543 0.91176 1.18287 1.22846 0.90226 0.88701 0.99408 1.76034 1.10094 1.10323 1.19027 1.78832 0.96444 1.14920 1.15154 1.47690 1.12653 1.00888 1.46626 0.67317 1.75007 1.03790 1.13196 1.23057 1.21066 0.95483 0.93181 1.03602 1.20214 0.89688 0.88656 1.15617 1.16991 0.86344 0.83047 0.78108 1.90741 1.16036 1.84983 1.52512 1.46226 1.08984 1.08205 1.70813 1.19183 0.95898 0.74019 0.97806 1.21257 0.92553 0.91529 1.52789 0.91662 1.24944 0.96256 0.98112 0.94655 1.69982 1.20219 1.13403 1.48708 0.86348 0.82207 0.80553 0.77751 1.19549 1.20798 1.20798 0.90202 0.89792 0.87427 0.80308 0.82883 0.77202 0.95291 0.95138 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 10.45 59.84 0.63 1.36 16 2 N -0.40 -5.45 3.14 -120.43 -0.38 -5.83 16 3 C 0.07 0.80 11.30 -16.83 -0.19 0.61 16 4 C -0.12 -1.65 6.10 -105.30 -0.64 -2.29 16 5 C 0.27 3.55 8.17 -156.31 -1.28 2.27 16 6 N -0.28 -3.65 12.53 32.16 0.40 -3.25 16 7 N -0.06 -0.65 13.47 60.35 0.81 0.16 16 8 N -0.23 -2.07 7.90 60.35 0.48 -1.60 16 9 H 0.47 1.87 8.96 -340.37 -3.05 -1.18 16 10 N -0.30 -3.59 12.40 32.18 0.40 -3.20 16 11 C -0.11 -1.56 10.28 -39.18 -0.40 -1.96 16 12 C -0.03 -0.47 6.84 -82.38 -0.56 -1.04 16 13 C 0.57 11.46 7.78 -12.84 -0.10 11.36 16 14 O -0.56 -12.79 14.72 5.20 0.08 -12.71 16 15 N -0.69 -14.61 5.53 -62.79 -0.35 -14.95 16 16 C 0.25 6.52 5.43 -5.19 -0.03 6.49 16 17 C -0.54 -14.50 9.28 -34.44 -0.32 -14.82 16 18 H 0.07 1.64 7.60 -52.49 -0.40 1.24 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 21 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 27 H 0.11 1.43 6.50 -51.93 -0.34 1.10 16 28 H 0.18 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.15 2.06 7.40 -52.49 -0.39 1.67 16 30 H 0.39 7.24 7.18 -40.82 -0.29 6.95 16 31 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 301.46 15.07 4.54 4.54 Total: -1.00 -33.86 301.46 -7.01 -40.87 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.72 Total: 1.67 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -3.00 Total: 3.63 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 2.10 Total: -53.61 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.86 -7.01 -40.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609477850.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.977 kcal (2) G-P(sol) polarization free energy of solvation -33.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds