Wall clock time and date at job start Mon Mar 30 2020 01:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34843 * 125.53211 * 2 1 4 4 C 1.36560 * 108.61599 * 179.97438 * 3 2 1 5 5 C 1.48500 * 126.28266 * 179.97438 * 4 3 2 6 6 N 1.34033 * 126.67503 * 359.69452 * 5 4 3 7 7 N 1.28981 * 107.27170 * 179.86706 * 6 5 4 8 8 N 1.28729 * 108.94056 * 0.39691 * 7 6 5 9 9 H 0.97004 * 125.34200 * 179.76437 * 8 7 6 10 10 N 1.28870 * 109.31243 * 359.74939 * 8 7 6 11 11 C 1.40807 * 107.43052 * 359.78515 * 4 3 2 12 12 C 1.36672 * 107.05549 * 0.34946 * 11 4 3 13 13 C 1.46723 * 126.02300 * 179.90968 * 12 11 4 14 14 O 1.21691 * 119.99439 * 182.85366 * 13 12 11 15 15 N 1.34771 * 120.00028 * 2.85690 * 13 12 11 16 16 C 1.46503 * 119.99858 * 174.88592 * 15 13 12 17 17 C 1.50696 * 109.46983 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00288 * 0.02562 * 17 16 15 19 19 C 1.37885 * 120.00070 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99569 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00125 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47182 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47161 * 119.99944 * 21 19 17 24 24 H 1.48496 * 109.46896 * 240.00005 * 21 19 17 25 25 H 1.09006 * 109.47539 * 265.09089 * 1 2 3 26 26 H 1.09004 * 109.46595 * 25.07893 * 1 2 3 27 27 H 1.08990 * 109.47550 * 145.08485 * 1 2 3 28 28 H 1.07995 * 125.69005 * 359.97438 * 3 2 1 29 29 H 1.08002 * 126.46954 * 180.25395 * 11 4 3 30 30 H 0.97000 * 120.00121 * 354.88939 * 15 13 12 31 31 H 1.09006 * 109.47346 * 299.99922 * 16 15 13 32 32 H 1.08992 * 109.47348 * 59.99974 * 16 15 13 33 33 H 0.97000 * 119.99610 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2486 1.0973 0.0000 4 6 3.5551 0.7000 0.0006 5 6 4.7442 1.5896 0.0002 6 7 4.7413 2.9299 -0.0064 7 7 5.9720 3.3156 -0.0012 8 7 6.7349 2.2786 -0.0002 9 1 7.7047 2.2955 0.0002 10 7 6.0077 1.2146 0.0007 11 6 3.5678 -0.7080 0.0060 12 6 2.2648 -1.1206 0.0006 13 6 1.8004 -2.5124 0.0015 14 8 0.6096 -2.7564 -0.0563 15 7 2.6926 -3.5204 0.0663 16 6 2.2267 -4.9047 0.1803 17 6 3.4139 -5.8313 0.2351 18 1 4.4153 -5.4293 0.1901 19 6 3.2217 -7.1925 0.3428 20 7 2.0023 -7.6820 0.3982 21 14 4.6933 -8.3411 0.4101 22 1 5.9453 -7.5467 0.3301 23 1 4.6696 -9.1017 1.6853 24 1 4.6346 -9.2881 -0.7322 25 1 -0.3634 -0.0879 1.0239 26 1 -0.3633 0.9308 -0.4356 27 1 -0.3634 -0.8426 -0.5881 28 1 1.9010 2.1198 -0.0004 29 1 4.4420 -1.3421 0.0116 30 1 3.6432 -3.3294 0.0376 31 1 1.6371 -5.0160 1.0904 32 1 1.6111 -5.1532 -0.6841 33 1 1.8671 -8.6395 0.4744 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609477850.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:53 Heat of formation + Delta-G solvation = 106.276020 kcal Electronic energy + Delta-G solvation = -20026.243425 eV Core-core repulsion = 16703.871533 eV Total energy + Delta-G solvation = -3322.371892 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.29179 -42.56243 -39.97227 -36.25523 -35.38100 -34.81446 -34.38093 -33.04008 -30.98228 -28.92494 -27.77757 -25.69282 -25.01241 -24.62008 -22.90600 -21.33552 -20.90679 -19.99621 -18.92815 -18.08426 -17.99318 -17.02872 -16.78018 -16.70581 -15.99440 -15.63992 -15.46255 -14.93245 -14.67800 -14.46619 -14.00182 -13.91509 -13.64856 -13.43772 -13.15857 -13.00345 -12.87012 -12.74504 -12.26065 -12.20856 -12.00785 -11.87505 -11.44961 -10.97292 -10.80822 -9.94634 -9.70794 -9.20022 -8.28235 -6.43974 0.15689 0.47422 0.64466 1.44759 1.45890 1.48382 1.59487 1.72720 2.05170 2.35249 2.41812 2.58214 2.97719 3.07334 3.26841 3.86255 4.00968 4.09750 4.29572 4.44231 4.46799 4.59633 4.80209 4.87013 5.04015 5.14212 5.24941 5.44930 5.49086 5.68078 5.73817 5.80039 5.85059 6.13287 6.65346 6.84111 7.22432 7.28063 7.38364 8.84147 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.018781 B = 0.004029 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.549105 B = 6947.682291 C = 8414.889313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.405 5.405 3 C 0.098 3.902 4 C -0.138 4.138 5 C 0.257 3.743 6 N -0.296 5.296 7 N -0.059 5.059 8 N -0.205 5.205 9 H 0.492 0.508 10 N -0.309 5.309 11 C -0.092 4.092 12 C -0.064 4.064 13 C 0.570 3.430 14 O -0.596 6.596 15 N -0.694 5.694 16 C 0.270 3.730 17 C -0.556 4.556 18 H 0.083 0.917 19 C 0.006 3.994 20 N -0.929 5.929 21 Si 0.983 3.017 22 H -0.254 1.254 23 H -0.279 1.279 24 H -0.279 1.279 25 H 0.083 0.917 26 H 0.129 0.871 27 H 0.078 0.922 28 H 0.218 0.782 29 H 0.160 0.840 30 H 0.408 0.592 31 H -0.006 1.006 32 H -0.007 1.007 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.390 21.280 -0.775 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.076 5.076 3 C -0.045 4.045 4 C -0.147 4.147 5 C -0.023 4.023 6 N -0.169 5.169 7 N -0.054 5.054 8 N -0.056 5.056 9 H 0.351 0.649 10 N -0.161 5.161 11 C -0.119 4.119 12 C -0.176 4.176 13 C 0.358 3.642 14 O -0.480 6.480 15 N -0.343 5.343 16 C 0.147 3.853 17 C -0.593 4.593 18 H 0.101 0.899 19 C -0.194 4.194 20 N -0.568 5.568 21 Si 0.806 3.194 22 H -0.177 1.177 23 H -0.204 1.204 24 H -0.205 1.205 25 H 0.102 0.898 26 H 0.147 0.853 27 H 0.097 0.903 28 H 0.234 0.766 29 H 0.177 0.823 30 H 0.244 0.756 31 H 0.012 0.988 32 H 0.011 0.989 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.377 21.439 -0.786 22.381 hybrid contribution 1.016 -1.386 0.067 1.720 sum 7.392 20.053 -0.719 21.384 Atomic orbital electron populations 1.22490 0.73998 1.06234 1.04893 1.43888 1.08218 1.04249 1.51196 1.22367 0.88409 0.92864 1.00842 1.16335 0.88581 0.90637 1.19177 1.22788 0.90395 0.88878 1.00265 1.76011 1.10907 1.10119 1.19846 1.78779 0.96258 1.15189 1.15195 1.47730 1.13522 0.99787 1.44560 0.64932 1.74964 1.03773 1.14167 1.23221 1.21195 0.94909 0.94145 1.01667 1.19568 0.90832 0.87288 1.19903 1.17478 0.85609 0.84526 0.76543 1.90716 1.17541 1.85886 1.53882 1.45909 1.09933 1.06721 1.71735 1.18613 0.95295 0.76898 0.94449 1.21635 0.93229 0.91994 1.52484 0.89869 1.26015 0.99406 1.00059 0.93871 1.70133 1.22926 1.14008 1.49735 0.85130 0.78574 0.77969 0.77682 1.17732 1.20428 1.20467 0.89805 0.85304 0.90294 0.76563 0.82276 0.75582 0.98840 0.98860 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.33 10.45 127.77 1.34 2.66 16 2 N -0.40 -10.32 3.14 -534.94 -1.68 -12.00 16 3 C 0.10 2.05 11.30 83.84 0.95 3.00 16 4 C -0.14 -3.42 6.10 -20.30 -0.12 -3.54 16 5 C 0.26 6.18 8.17 137.40 1.12 7.30 16 6 N -0.30 -6.91 12.53 -52.17 -0.65 -7.56 16 7 N -0.06 -1.16 13.47 37.02 0.50 -0.66 16 8 N -0.21 -3.11 7.90 37.02 0.29 -2.82 16 9 H 0.49 2.51 8.96 -347.54 -3.12 -0.61 16 10 N -0.31 -6.69 12.40 -52.11 -0.65 -7.34 16 11 C -0.09 -2.58 10.28 22.53 0.23 -2.35 16 12 C -0.06 -2.07 6.84 40.08 0.27 -1.80 16 13 C 0.57 23.79 7.78 86.46 0.67 24.46 16 14 O -0.60 -28.70 14.72 -4.32 -0.06 -28.76 16 15 N -0.69 -30.24 5.53 -470.78 -2.60 -32.85 16 16 C 0.27 14.74 5.43 85.63 0.47 15.20 16 17 C -0.56 -30.13 9.28 25.60 0.24 -29.89 16 18 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 19 C 0.01 0.34 5.46 84.66 0.46 0.80 16 20 N -0.93 -55.48 13.29 21.45 0.28 -55.20 16 21 Si 0.98 42.14 29.54 68.60 2.03 44.17 16 22 H -0.25 -10.09 7.11 99.48 0.71 -9.39 16 23 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 25 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.13 1.47 8.12 -2.39 -0.02 1.45 16 27 H 0.08 2.15 6.50 -2.39 -0.02 2.13 16 28 H 0.22 2.83 8.06 -2.91 -0.02 2.80 16 29 H 0.16 4.11 7.40 -2.91 -0.02 4.09 16 30 H 0.41 15.17 7.18 -92.71 -0.67 14.50 16 31 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 32 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -75.65 301.46 0.49 -75.16 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -2.59 Total: 12.00 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 5.62 Total: 15.86 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -4.51 Total: -118.43 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.06 Total: -28.76 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -75.65 0.49 -75.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609477850.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.439 kcal (2) G-P(sol) polarization free energy of solvation -75.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds