Wall clock time and date at job start Mon Mar 30 2020 01:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39907 * 125.75486 * 2 1 4 4 C 1.30378 * 109.12957 * 179.97438 * 3 2 1 5 5 C 1.41347 * 108.15327 * 0.02562 * 4 3 2 6 6 C 1.47062 * 126.47681 * 180.26465 * 5 4 3 7 7 O 1.21644 * 120.00179 * 179.68417 * 6 5 4 8 8 N 1.34778 * 120.00190 * 359.68030 * 6 5 4 9 9 C 1.46496 * 120.00209 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47318 * 179.97438 * 9 8 6 11 11 H 1.08005 * 120.00043 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00444 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00354 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99719 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47596 * 89.99533 * 14 12 10 16 16 H 1.48501 * 109.47110 * 210.00044 * 14 12 10 17 17 H 1.48505 * 109.47127 * 329.99870 * 14 12 10 18 18 C 1.34707 * 125.76201 * 179.97438 * 2 1 3 19 19 N 1.39159 * 126.40570 * 0.03621 * 18 2 1 20 20 C 1.36450 * 127.13286 * 134.68353 * 19 18 2 21 21 N 1.30489 * 107.18138 * 179.83691 * 20 19 18 22 22 N 1.28527 * 109.94996 * 0.44174 * 21 20 19 23 23 C 1.30493 * 109.94712 * 359.71978 * 22 21 20 24 24 H 1.08994 * 109.47343 * 270.03562 * 1 2 3 25 25 H 1.08999 * 109.47581 * 30.04458 * 1 2 3 26 26 H 1.09012 * 109.47009 * 150.03743 * 1 2 3 27 27 H 1.07997 * 125.92248 * 180.02562 * 4 3 2 28 28 H 0.97005 * 120.00122 * 0.02562 * 8 6 5 29 29 H 1.08997 * 109.47213 * 300.00062 * 9 8 6 30 30 H 1.09002 * 109.46856 * 59.99871 * 9 8 6 31 31 H 0.96998 * 119.99741 * 179.97438 * 13 12 10 32 32 H 1.08001 * 126.40723 * 0.02562 * 20 19 18 33 33 H 1.08000 * 126.40761 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2825 1.1354 0.0000 4 6 3.5318 0.7624 0.0006 5 6 3.5695 -0.6506 0.0003 6 6 4.7749 -1.4931 0.0062 7 8 4.6699 -2.7049 0.0112 8 7 5.9959 -0.9224 0.0061 9 6 7.1966 -1.7616 0.0115 10 6 8.4223 -0.8849 0.0095 11 1 8.3173 0.1901 0.0044 12 6 9.6778 -1.4548 0.0143 13 7 10.7474 -0.6897 0.0121 14 14 9.8594 -3.3140 0.0225 15 1 9.9101 -3.8126 -1.3753 16 1 11.1129 -3.6858 0.7265 17 1 8.6994 -3.9216 0.7229 18 6 2.2522 -1.0931 0.0005 19 7 1.8261 -2.4178 0.0004 20 6 2.3024 -3.4363 -0.7728 21 7 1.6310 -4.5088 -0.4539 22 7 0.7654 -4.2304 0.4544 23 6 0.8412 -2.9662 0.7691 24 1 -0.3634 0.0006 1.0276 25 1 -0.3634 0.8895 -0.5145 26 1 -0.3634 -0.8904 -0.5133 27 1 4.3891 1.4191 0.0011 28 1 6.0796 0.0440 0.0025 29 1 7.1986 -2.3875 0.9038 30 1 7.2016 -2.3944 -0.8761 31 1 11.6306 -1.0907 0.0159 32 1 3.0901 -3.3681 -1.5085 33 1 0.2376 -2.4507 1.5014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635343839.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:37 Heat of formation + Delta-G solvation = 138.096807 kcal Electronic energy + Delta-G solvation = -20807.343935 eV Core-core repulsion = 17486.351895 eV Total energy + Delta-G solvation = -3320.992039 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.43752 -41.63955 -38.75496 -35.39349 -34.36971 -33.75420 -32.40666 -30.75728 -30.02382 -28.47517 -27.09843 -24.25445 -23.13922 -22.59300 -21.63344 -21.00927 -20.01806 -18.87478 -17.39348 -16.68855 -16.27139 -15.97313 -15.61423 -15.42204 -14.98687 -14.83522 -14.52224 -14.18630 -14.02570 -13.32301 -13.22519 -13.01595 -12.41169 -12.23235 -11.88673 -11.71949 -11.29583 -11.05107 -10.81794 -10.63309 -10.02137 -9.79936 -9.74289 -9.55925 -9.37404 -9.02249 -8.82524 -8.25276 -6.26062 -4.29172 0.63078 1.35688 1.75001 1.89769 2.37449 2.76067 3.24329 3.31713 3.39652 3.57330 3.65413 4.09454 4.17128 4.29732 4.45273 4.53196 4.56348 4.75127 4.83141 4.88473 5.09509 5.09717 5.33725 5.58599 5.81085 5.93328 6.01805 6.71568 6.74642 6.99128 7.01223 7.07301 7.30298 8.02884 8.39298 8.49417 8.65078 8.77201 9.33345 10.85661 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.022910 B = 0.004928 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.856917 B = 5680.589913 C = 6800.695983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.360 5.360 3 N -0.266 5.266 4 C 0.098 3.902 5 C -0.254 4.254 6 C 0.574 3.426 7 O -0.559 6.559 8 N -0.691 5.691 9 C 0.222 3.778 10 C -0.546 4.546 11 H 0.081 0.919 12 C 0.080 3.920 13 N -0.891 5.891 14 Si 0.875 3.125 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.260 1.260 18 C 0.337 3.663 19 N -0.422 5.422 20 C 0.240 3.760 21 N -0.301 5.301 22 N -0.281 5.281 23 C 0.145 3.855 24 H 0.086 0.914 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.206 0.794 28 H 0.397 0.603 29 H 0.028 0.972 30 H 0.024 0.976 31 H 0.268 0.732 32 H 0.226 0.774 33 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.398 4.147 -0.449 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.143 5.143 3 N -0.087 5.087 4 C -0.089 4.089 5 C -0.271 4.271 6 C 0.359 3.641 7 O -0.439 6.439 8 N -0.338 5.338 9 C 0.100 3.900 10 C -0.584 4.584 11 H 0.099 0.901 12 C -0.125 4.125 13 N -0.528 5.528 14 Si 0.702 3.298 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.185 1.185 18 C 0.113 3.887 19 N -0.115 5.115 20 C -0.047 4.047 21 N -0.137 5.137 22 N -0.117 5.117 23 C -0.141 4.141 24 H 0.104 0.896 25 H 0.122 0.878 26 H 0.107 0.893 27 H 0.223 0.777 28 H 0.231 0.769 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.243 0.757 33 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -21.660 2.758 -0.438 21.839 hybrid contribution 1.322 0.404 0.150 1.390 sum -20.338 3.162 -0.288 20.585 Atomic orbital electron populations 1.22138 0.73108 1.05541 1.04373 1.48615 1.07311 1.02207 1.56134 1.77347 1.02078 1.04474 1.24777 1.24142 0.95473 0.93328 0.95948 1.20270 0.91747 0.94398 1.20679 1.17063 0.82526 0.86913 0.77643 1.90771 1.86747 1.13736 1.52682 1.45973 1.05406 1.10905 1.71475 1.19552 0.81872 0.91481 0.97080 1.21054 0.88814 0.94828 1.53698 0.90147 1.24774 0.95467 0.98459 0.93761 1.69871 0.98153 1.35591 1.49146 0.86839 0.78356 0.85514 0.79125 1.19764 1.20876 1.18472 1.17599 0.89797 0.79036 1.02260 1.43344 1.30256 1.05938 1.31914 1.27059 0.99266 0.81513 0.96816 1.74306 1.06113 1.21890 1.11351 1.74180 1.16984 1.10360 1.10202 1.26782 0.94453 0.92700 1.00200 0.89587 0.87764 0.89319 0.77733 0.76919 0.95450 0.95792 0.92186 0.75744 0.76564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 10.71 59.85 0.64 1.12 16 2 N -0.36 -3.57 3.99 -66.63 -0.27 -3.83 16 3 N -0.27 -2.94 12.48 30.86 0.39 -2.56 16 4 C 0.10 1.09 11.50 -16.99 -0.20 0.90 16 5 C -0.25 -3.50 6.13 -104.87 -0.64 -4.15 16 6 C 0.57 10.14 7.79 -12.68 -0.10 10.04 16 7 O -0.56 -11.51 13.45 5.24 0.07 -11.44 16 8 N -0.69 -12.84 5.54 -62.68 -0.35 -13.19 16 9 C 0.22 5.14 4.50 -5.20 -0.02 5.12 16 10 C -0.55 -14.28 9.83 -34.44 -0.34 -14.62 16 11 H 0.08 2.17 7.84 -52.48 -0.41 1.76 16 12 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 13 N -0.89 -25.74 13.96 55.43 0.77 -24.97 16 14 Si 0.88 20.90 27.47 -169.99 -4.67 16.23 16 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 18 C 0.34 4.17 7.20 -152.93 -1.10 3.07 16 19 N -0.42 -5.44 2.76 -64.49 -0.18 -5.61 16 20 C 0.24 3.55 10.36 -89.08 -0.92 2.63 16 21 N -0.30 -4.95 12.19 29.87 0.36 -4.58 16 22 N -0.28 -4.22 12.19 29.87 0.36 -3.86 16 23 C 0.15 1.67 11.44 -89.08 -1.02 0.65 16 24 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.09 0.42 7.51 -51.92 -0.39 0.03 16 27 H 0.21 1.69 7.50 -52.49 -0.39 1.29 16 28 H 0.40 6.29 7.27 -40.82 -0.30 5.99 16 29 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 30 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 31 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.23 3.17 7.22 -52.49 -0.38 2.79 16 33 H 0.22 1.47 8.03 -52.49 -0.42 1.05 16 LS Contribution 294.43 15.07 4.44 4.44 Total: -1.00 -34.51 294.43 -5.94 -40.44 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -3.07 Total: 2.09 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -3.80 Total: 6.84 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 1.10 Total: -58.60 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.07 Total: -11.44 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.51 -5.94 -40.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635343839.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.540 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds