Wall clock time and date at job start Mon Mar 30 2020 01:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39907 * 125.75486 * 2 1 4 4 C 1.30378 * 109.12957 * 179.97438 * 3 2 1 5 5 C 1.41347 * 108.15327 * 0.02562 * 4 3 2 6 6 C 1.47062 * 126.47681 * 180.26465 * 5 4 3 7 7 O 1.21644 * 120.00179 * 179.68417 * 6 5 4 8 8 N 1.34778 * 120.00190 * 359.68030 * 6 5 4 9 9 C 1.46496 * 120.00209 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47318 * 179.97438 * 9 8 6 11 11 H 1.08005 * 120.00043 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00444 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00354 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99719 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47596 * 89.99533 * 14 12 10 16 16 H 1.48501 * 109.47110 * 210.00044 * 14 12 10 17 17 H 1.48505 * 109.47127 * 329.99870 * 14 12 10 18 18 C 1.34707 * 125.76201 * 179.97438 * 2 1 3 19 19 N 1.39159 * 126.40570 * 0.03621 * 18 2 1 20 20 C 1.36450 * 127.13286 * 134.68353 * 19 18 2 21 21 N 1.30489 * 107.18138 * 179.83691 * 20 19 18 22 22 N 1.28527 * 109.94996 * 0.44174 * 21 20 19 23 23 C 1.30493 * 109.94712 * 359.71978 * 22 21 20 24 24 H 1.08994 * 109.47343 * 270.03562 * 1 2 3 25 25 H 1.08999 * 109.47581 * 30.04458 * 1 2 3 26 26 H 1.09012 * 109.47009 * 150.03743 * 1 2 3 27 27 H 1.07997 * 125.92248 * 180.02562 * 4 3 2 28 28 H 0.97005 * 120.00122 * 0.02562 * 8 6 5 29 29 H 1.08997 * 109.47213 * 300.00062 * 9 8 6 30 30 H 1.09002 * 109.46856 * 59.99871 * 9 8 6 31 31 H 0.96998 * 119.99741 * 179.97438 * 13 12 10 32 32 H 1.08001 * 126.40723 * 0.02562 * 20 19 18 33 33 H 1.08000 * 126.40761 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2825 1.1354 0.0000 4 6 3.5318 0.7624 0.0006 5 6 3.5695 -0.6506 0.0003 6 6 4.7749 -1.4931 0.0062 7 8 4.6699 -2.7049 0.0112 8 7 5.9959 -0.9224 0.0061 9 6 7.1966 -1.7616 0.0115 10 6 8.4223 -0.8849 0.0095 11 1 8.3173 0.1901 0.0044 12 6 9.6778 -1.4548 0.0143 13 7 10.7474 -0.6897 0.0121 14 14 9.8594 -3.3140 0.0225 15 1 9.9101 -3.8126 -1.3753 16 1 11.1129 -3.6858 0.7265 17 1 8.6994 -3.9216 0.7229 18 6 2.2522 -1.0931 0.0005 19 7 1.8261 -2.4178 0.0004 20 6 2.3024 -3.4363 -0.7728 21 7 1.6310 -4.5088 -0.4539 22 7 0.7654 -4.2304 0.4544 23 6 0.8412 -2.9662 0.7691 24 1 -0.3634 0.0006 1.0276 25 1 -0.3634 0.8895 -0.5145 26 1 -0.3634 -0.8904 -0.5133 27 1 4.3891 1.4191 0.0011 28 1 6.0796 0.0440 0.0025 29 1 7.1986 -2.3875 0.9038 30 1 7.2016 -2.3944 -0.8761 31 1 11.6306 -1.0907 0.0159 32 1 3.0901 -3.3681 -1.5085 33 1 0.2376 -2.4507 1.5014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635343839.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:37 Heat of formation + Delta-G solvation = 114.539535 kcal Electronic energy + Delta-G solvation = -20808.365455 eV Core-core repulsion = 17486.351895 eV Total energy + Delta-G solvation = -3322.013559 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.46699 -42.57172 -40.18694 -36.50112 -35.98027 -34.63731 -34.25950 -31.81593 -31.16430 -29.92438 -28.09300 -25.33415 -24.41914 -23.86825 -22.95417 -21.98087 -21.30766 -20.01086 -18.90204 -17.83407 -17.62654 -17.06311 -16.77910 -16.61535 -16.15653 -16.02665 -15.89475 -15.58440 -14.97082 -14.76851 -14.30420 -14.19528 -13.72882 -13.59890 -13.06251 -12.95155 -12.72565 -12.69144 -12.23074 -11.92364 -11.67688 -11.62122 -11.07396 -10.89143 -10.61742 -10.56082 -10.15544 -9.75594 -8.37199 -6.43411 -0.35361 0.47569 0.78935 0.92337 1.34718 1.38154 1.49332 1.54104 1.68024 2.27076 2.29947 2.41637 2.99138 3.20492 3.36783 3.49937 3.56877 3.80046 4.08235 4.18975 4.23610 4.27739 4.52897 4.56745 4.83181 4.89094 5.01339 5.06347 5.19043 5.29346 5.49231 5.80754 6.09315 6.16071 6.57764 6.81670 7.17327 7.35686 7.43747 8.77277 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.022910 B = 0.004928 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.856917 B = 5680.589913 C = 6800.695983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.343 5.343 3 N -0.268 5.268 4 C 0.106 3.894 5 C -0.279 4.279 6 C 0.577 3.423 7 O -0.591 6.591 8 N -0.691 5.691 9 C 0.235 3.765 10 C -0.543 4.543 11 H 0.065 0.935 12 C 0.030 3.970 13 N -0.930 5.930 14 Si 0.932 3.068 15 H -0.265 1.265 16 H -0.277 1.277 17 H -0.262 1.262 18 C 0.341 3.659 19 N -0.423 5.423 20 C 0.231 3.769 21 N -0.332 5.332 22 N -0.318 5.318 23 C 0.172 3.828 24 H 0.115 0.885 25 H 0.121 0.879 26 H 0.097 0.903 27 H 0.229 0.771 28 H 0.410 0.590 29 H 0.012 0.988 30 H 0.017 0.983 31 H 0.271 0.729 32 H 0.223 0.777 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.615 4.983 0.057 23.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.124 5.124 3 N -0.089 5.089 4 C -0.080 4.080 5 C -0.297 4.297 6 C 0.365 3.635 7 O -0.474 6.474 8 N -0.340 5.340 9 C 0.111 3.889 10 C -0.581 4.581 11 H 0.083 0.917 12 C -0.171 4.171 13 N -0.569 5.569 14 Si 0.756 3.244 15 H -0.190 1.190 16 H -0.202 1.202 17 H -0.186 1.186 18 C 0.115 3.885 19 N -0.115 5.115 20 C -0.057 4.057 21 N -0.167 5.167 22 N -0.153 5.153 23 C -0.115 4.115 24 H 0.133 0.867 25 H 0.139 0.861 26 H 0.115 0.885 27 H 0.245 0.755 28 H 0.246 0.754 29 H 0.030 0.970 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.240 0.760 33 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -23.930 3.631 0.064 24.204 hybrid contribution 1.855 0.252 0.014 1.872 sum -22.075 3.884 0.079 22.414 Atomic orbital electron populations 1.22642 0.70184 1.06871 1.06700 1.48983 1.08722 1.00949 1.53790 1.77366 1.02012 1.04733 1.24803 1.24452 0.96336 0.92287 0.94909 1.19894 0.90710 0.95165 1.23915 1.17467 0.83046 0.86852 0.76155 1.90755 1.87284 1.15430 1.53952 1.45717 1.04692 1.11205 1.72350 1.19113 0.82661 0.91202 0.95909 1.21286 0.89939 0.94581 1.52327 0.91735 1.25519 0.95396 1.02435 0.93739 1.69970 0.98741 1.37382 1.50848 0.85938 0.78270 0.80737 0.79416 1.18979 1.20210 1.18591 1.17517 0.89879 0.79256 1.01858 1.43359 1.30364 1.05970 1.31823 1.27004 0.99422 0.81944 0.97356 1.74235 1.07070 1.22978 1.12426 1.74106 1.17808 1.12366 1.11050 1.27658 0.93046 0.91763 0.99011 0.86671 0.86091 0.88459 0.75510 0.75386 0.97011 0.96549 0.91936 0.76048 0.71821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 10.71 127.77 1.37 1.84 16 2 N -0.34 -5.60 3.99 -364.72 -1.46 -7.06 16 3 N -0.27 -5.07 12.48 -56.27 -0.70 -5.77 16 4 C 0.11 2.12 11.50 85.67 0.98 3.10 16 5 C -0.28 -7.27 6.13 -20.03 -0.12 -7.40 16 6 C 0.58 20.14 7.79 86.56 0.67 20.82 16 7 O -0.59 -24.50 13.45 -4.17 -0.06 -24.55 16 8 N -0.69 -25.50 5.54 -470.47 -2.61 -28.11 16 9 C 0.23 10.92 4.50 85.63 0.38 11.30 16 10 C -0.54 -28.66 9.83 25.60 0.25 -28.41 16 11 H 0.06 3.53 7.84 -2.91 -0.02 3.51 16 12 C 0.03 1.62 5.47 84.66 0.46 2.09 16 13 N -0.93 -54.33 13.96 21.45 0.30 -54.03 16 14 Si 0.93 43.27 27.47 68.60 1.88 45.16 16 15 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.26 -12.10 6.54 99.48 0.65 -11.45 16 18 C 0.34 7.63 7.20 132.27 0.95 8.59 16 19 N -0.42 -10.14 2.76 -357.95 -0.99 -11.13 16 20 C 0.23 6.79 10.36 179.81 1.86 8.66 16 21 N -0.33 -10.91 12.19 -59.41 -0.72 -11.64 16 22 N -0.32 -9.20 12.19 -59.41 -0.72 -9.92 16 23 C 0.17 3.50 11.44 179.81 2.06 5.56 16 24 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 25 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.10 0.51 7.51 -2.38 -0.02 0.50 16 27 H 0.23 3.18 7.50 -2.91 -0.02 3.16 16 28 H 0.41 12.73 7.27 -92.70 -0.67 12.06 16 29 H 0.01 0.59 7.20 -2.39 -0.02 0.58 16 30 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 31 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 32 H 0.22 6.45 7.22 -2.91 -0.02 6.43 16 33 H 0.27 2.32 8.03 -2.91 -0.02 2.30 16 Total: -1.00 -75.61 294.43 4.24 -71.37 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.44 Total: 9.53 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: 8.88 Total: 26.15 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -6.90 Total: -127.65 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.06 Total: -24.55 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.16 kcal Total: -75.61 4.24 -71.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635343839.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.908 kcal (2) G-P(sol) polarization free energy of solvation -75.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds