Wall clock time and date at job start Mon Mar 30 2020 01:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36934 * 120.00397 * 2 1 4 4 H 1.08004 * 119.99971 * 202.59355 * 3 2 1 5 5 C 1.38811 * 119.99774 * 22.58640 * 3 2 1 6 6 N 1.31615 * 120.00132 * 11.16134 * 5 3 2 7 7 Si 1.86800 * 119.99892 * 191.15454 * 5 3 2 8 8 H 1.48499 * 109.47052 * 90.00365 * 7 5 3 9 9 H 1.48500 * 109.47214 * 210.00353 * 7 5 3 10 10 H 1.48503 * 109.47412 * 330.00332 * 7 5 3 11 11 C 1.46507 * 120.00011 * 179.97438 * 2 1 3 12 12 C 1.50705 * 109.47038 * 270.00147 * 11 2 1 13 13 C 1.38334 * 119.86436 * 104.99958 * 12 11 2 14 14 C 1.37955 * 120.17315 * 180.29858 * 13 12 11 15 15 C 1.39600 * 119.89886 * 359.47326 * 14 13 12 16 16 C 1.47833 * 120.12854 * 180.22985 * 15 14 13 17 17 N 1.31216 * 125.72500 * 179.97438 * 16 15 14 18 18 C 1.34155 * 108.64508 * 179.83914 * 17 16 15 19 19 C 1.34545 * 107.84037 * 0.42219 * 18 17 16 20 20 O 1.34421 * 125.72528 * 0.29602 * 16 15 14 21 21 C 1.39520 * 119.73701 * 0.52346 * 15 14 13 22 22 C 1.38205 * 119.82736 * 359.72789 * 21 15 14 23 23 F 1.35099 * 119.95338 * 179.97438 * 22 21 15 24 24 H 1.09007 * 109.47737 * 274.25179 * 1 2 3 25 25 H 1.09001 * 109.47223 * 34.25308 * 1 2 3 26 26 H 1.09000 * 109.47471 * 154.25022 * 1 2 3 27 27 H 0.97000 * 120.00414 * 179.97438 * 6 5 3 28 28 H 1.08997 * 109.47193 * 150.00311 * 11 2 1 29 29 H 1.09000 * 109.46624 * 29.99875 * 11 2 1 30 30 H 1.08006 * 119.91841 * 0.02562 * 13 12 11 31 31 H 1.07999 * 120.05170 * 179.72344 * 14 13 12 32 32 H 1.08010 * 126.07874 * 180.15268 * 18 17 16 33 33 H 1.07999 * 126.35989 * 179.77939 * 19 18 17 34 34 H 1.08001 * 120.08206 * 179.70952 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1675 1.2217 -0.3593 5 6 1.5355 2.3419 0.4617 6 7 0.3864 2.2671 1.0991 7 14 2.3400 4.0038 0.1786 8 1 1.8707 4.5674 -1.1126 9 1 1.9736 4.9258 1.2836 10 1 3.8154 3.8394 0.1399 11 6 2.1974 -1.2688 0.0006 12 6 2.4486 -1.7032 1.4216 13 6 1.7062 -2.7347 1.9680 14 6 1.9265 -3.1334 3.2702 15 6 2.9089 -2.5014 4.0347 16 6 3.1527 -2.9280 5.4290 17 7 4.0441 -2.4135 6.2429 18 6 3.9702 -3.0532 7.4197 19 6 3.0119 -3.9922 7.3190 20 8 2.5026 -3.9122 6.0738 21 6 3.6553 -1.4616 3.4797 22 6 3.4217 -1.0676 2.1757 23 9 4.1427 -0.0606 1.6359 24 1 -0.3635 0.0762 1.0249 25 1 -0.3634 0.8494 -0.5784 26 1 -0.3634 -0.9256 -0.4465 27 1 -0.0427 3.0748 1.4221 28 1 3.1498 -1.1387 -0.5133 29 1 1.6083 -2.0286 -0.5129 30 1 0.9490 -3.2263 1.3751 31 1 1.3428 -3.9360 3.6962 32 1 4.5757 -2.8533 8.2915 33 1 2.7072 -4.6817 8.0924 34 1 4.4134 -0.9656 4.0676 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652437418.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:51 Heat of formation + Delta-G solvation = 13.138053 kcal Electronic energy + Delta-G solvation = -20794.312855 eV Core-core repulsion = 17415.689485 eV Total energy + Delta-G solvation = -3378.623370 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.66576 -44.27152 -40.05362 -37.43681 -35.83107 -34.18357 -32.59655 -31.55769 -30.36700 -28.00726 -27.44291 -24.54904 -24.21757 -22.99022 -22.70266 -21.73508 -19.25039 -18.77588 -17.64348 -17.56878 -17.30577 -17.04833 -16.63879 -16.28207 -15.82199 -15.44755 -15.36084 -15.01439 -14.70654 -14.15743 -14.09079 -13.78836 -13.46658 -13.22374 -12.84499 -12.68840 -12.49440 -12.45678 -12.34823 -12.06666 -11.99242 -11.80823 -11.61741 -10.64513 -10.57448 -9.78076 -9.17822 -8.80575 -7.83321 -5.28766 -0.43966 0.26501 0.82350 1.43774 1.45049 1.53347 1.61385 1.73578 2.49562 2.67789 2.98505 3.32315 3.48887 3.74337 3.84938 3.96358 4.04639 4.08102 4.18556 4.35728 4.57901 4.65022 4.81881 4.86726 4.90816 4.96611 5.12403 5.16419 5.18957 5.35621 5.38311 5.46876 5.66783 5.76644 5.89970 6.33386 6.68472 7.16375 7.85532 8.26426 9.19718 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.023824 B = 0.004935 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.980658 B = 5672.380930 C = 6130.811192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.606 5.606 3 C -0.243 4.243 4 H 0.068 0.932 5 C -0.050 4.050 6 N -0.936 5.936 7 Si 0.957 3.043 8 H -0.281 1.281 9 H -0.297 1.297 10 H -0.273 1.273 11 C 0.176 3.824 12 C -0.114 4.114 13 C -0.085 4.085 14 C -0.092 4.092 15 C -0.018 4.018 16 C 0.219 3.781 17 N -0.507 5.507 18 C -0.063 4.063 19 C -0.055 4.055 20 O -0.201 6.201 21 C -0.124 4.124 22 C 0.093 3.907 23 F -0.143 7.143 24 H 0.000 1.000 25 H 0.019 0.981 26 H 0.041 0.959 27 H 0.246 0.754 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.167 0.833 31 H 0.162 0.838 32 H 0.214 0.786 33 H 0.269 0.731 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.889 -16.403 9.012 18.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.327 5.327 3 C -0.374 4.374 4 H 0.085 0.915 5 C -0.245 4.245 6 N -0.583 5.583 7 Si 0.786 3.214 8 H -0.207 1.207 9 H -0.224 1.224 10 H -0.198 1.198 11 C 0.051 3.949 12 C -0.119 4.119 13 C -0.103 4.103 14 C -0.112 4.112 15 C -0.020 4.020 16 C 0.016 3.984 17 N -0.238 5.238 18 C -0.203 4.203 19 C -0.124 4.124 20 O -0.087 6.087 21 C -0.144 4.144 22 C 0.073 3.927 23 F -0.121 7.121 24 H 0.019 0.981 25 H 0.038 0.962 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.185 0.815 31 H 0.179 0.821 32 H 0.231 0.769 33 H 0.285 0.715 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.180 -15.751 8.824 18.332 hybrid contribution 0.218 1.228 0.502 1.345 sum 3.397 -14.522 9.326 17.590 Atomic orbital electron populations 1.20607 0.81940 0.96664 0.97589 1.44345 1.02456 1.01118 1.84763 1.19452 0.97955 0.86172 1.33808 0.91470 1.25679 0.98420 1.01511 0.98862 1.70214 1.19147 1.27243 1.41742 0.85410 0.78453 0.80602 0.76971 1.20744 1.22420 1.19839 1.20144 0.97139 0.88090 0.89564 1.21555 0.93781 0.95163 1.01408 1.21131 0.98778 0.95382 0.95036 1.21445 0.96057 0.99948 0.93720 1.16959 0.99880 0.98231 0.86929 1.23624 0.91474 0.88598 0.94706 1.70641 1.21296 1.28249 1.03572 1.23998 1.02431 0.96706 0.97138 1.26161 0.97539 1.03685 0.85043 1.84502 1.53204 1.46115 1.24842 1.20931 1.01767 0.98180 0.93554 1.17588 0.94232 0.88394 0.92440 1.91487 1.76207 1.58316 1.86118 0.98125 0.96168 0.94016 0.94474 0.92703 0.88917 0.81549 0.82079 0.76896 0.71539 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.47 9.01 127.77 1.15 9.62 16 2 N -0.61 -29.87 2.91 -731.30 -2.13 -32.00 16 3 C -0.24 -13.51 8.25 84.03 0.69 -12.81 16 4 H 0.07 3.74 7.65 -2.91 -0.02 3.72 16 5 C -0.05 -2.86 5.13 84.86 0.44 -2.42 16 6 N -0.94 -56.37 10.59 21.65 0.23 -56.14 16 7 Si 0.96 46.90 29.57 68.60 2.03 48.93 16 8 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 9 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 10 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 11 C 0.18 6.88 5.56 85.63 0.48 7.36 16 12 C -0.11 -4.28 5.47 -19.76 -0.11 -4.39 16 13 C -0.08 -2.48 9.65 22.23 0.21 -2.27 16 14 C -0.09 -2.56 9.72 22.53 0.22 -2.34 16 15 C -0.02 -0.59 5.87 -20.10 -0.12 -0.71 16 16 C 0.22 6.66 7.90 87.33 0.69 7.35 16 17 N -0.51 -15.65 10.91 -305.08 -3.33 -18.98 16 18 C -0.06 -1.33 11.87 83.49 0.99 -0.33 16 19 C -0.05 -0.90 12.17 66.97 0.82 -0.08 16 20 O -0.20 -4.88 10.52 -8.30 -0.09 -4.96 16 21 C -0.12 -4.67 9.67 22.57 0.22 -4.45 16 22 C 0.09 3.88 7.19 22.34 0.16 4.04 16 23 F -0.14 -6.70 15.14 44.97 0.68 -6.02 16 24 H 0.00 0.02 7.41 -2.38 -0.02 0.00 16 25 H 0.02 1.04 7.20 -2.39 -0.02 1.03 16 26 H 0.04 1.61 7.84 -2.39 -0.02 1.59 16 27 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.05 2.17 7.96 -2.39 -0.02 2.15 16 29 H 0.09 2.89 7.66 -2.39 -0.02 2.87 16 30 H 0.17 3.69 7.99 -2.91 -0.02 3.67 16 31 H 0.16 3.37 7.90 -2.91 -0.02 3.35 16 32 H 0.21 2.83 8.06 -2.91 -0.02 2.80 16 33 H 0.27 1.17 8.06 -2.91 -0.02 1.15 16 34 H 0.13 5.04 7.83 -2.91 -0.02 5.01 16 Total: -1.00 -72.93 302.31 4.36 -68.57 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: 1.12 Total: 2.06 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 5.84 Total: -1.46 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -5.23 Total: -107.12 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.09 Total: -4.96 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 0.68 Total: -6.02 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -72.93 4.36 -68.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652437418.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.709 kcal (2) G-P(sol) polarization free energy of solvation -72.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds