Wall clock time and date at job start Mon Mar 30 2020 01:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47200 * 2 1 4 4 C 1.50692 * 109.47715 * 120.00033 * 2 1 3 5 5 H 1.08001 * 120.00030 * 119.99264 * 4 2 1 6 6 C 1.37879 * 120.00390 * 300.00496 * 4 2 1 7 7 N 1.31513 * 119.99459 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00173 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47249 * 89.99894 * 8 6 4 10 10 H 1.48507 * 109.47047 * 209.99654 * 8 6 4 11 11 H 1.48497 * 109.47610 * 329.99794 * 8 6 4 12 12 N 1.46902 * 109.47099 * 240.00674 * 2 1 3 13 13 C 1.46904 * 110.99563 * 306.04327 * 12 2 1 14 14 C 1.46895 * 111.00326 * 69.99317 * 12 2 1 15 15 C 1.50703 * 109.47244 * 170.00141 * 14 12 2 16 16 C 1.38794 * 119.60854 * 270.02168 * 15 14 12 17 17 C 1.37657 * 120.06189 * 179.97438 * 16 15 14 18 18 C 1.39331 * 119.95718 * 359.97438 * 17 16 15 19 19 S 1.76080 * 131.73474 * 180.02562 * 18 17 16 20 20 C 1.70653 * 90.82660 * 179.97438 * 19 18 17 21 21 N 1.27931 * 111.52169 * 359.74196 * 20 19 18 22 22 C 1.34668 * 117.84610 * 0.48320 * 21 20 19 23 23 C 1.36172 * 119.60900 * 90.00340 * 15 14 12 24 24 H 1.08999 * 109.46834 * 299.99702 * 1 2 3 25 25 H 1.08998 * 109.47427 * 59.99799 * 1 2 3 26 26 H 1.08997 * 109.46907 * 180.02562 * 1 2 3 27 27 H 0.96999 * 119.99626 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.46819 * 183.95697 * 13 12 2 29 29 H 1.08997 * 109.46988 * 303.94920 * 13 12 2 30 30 H 1.08991 * 109.47066 * 63.95864 * 13 12 2 31 31 H 1.09005 * 109.46920 * 50.00798 * 14 12 2 32 32 H 1.08999 * 109.47741 * 290.00668 * 14 12 2 33 33 H 1.07998 * 119.97077 * 359.96217 * 16 15 14 34 34 H 1.08001 * 120.01788 * 179.97438 * 17 16 15 35 35 H 1.08004 * 124.23562 * 179.97438 * 20 19 18 36 36 H 1.07999 * 119.79020 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3216 -1.1204 4.0077 9 1 3.6299 -0.5459 4.4121 10 1 1.3434 -0.9494 5.1119 11 1 2.4862 -2.5663 3.7118 12 7 2.0196 -0.6924 -1.1995 13 6 1.4342 -2.0354 -1.3079 14 6 1.7528 0.0973 -2.4091 15 6 2.4772 -0.5161 -3.5795 16 6 3.7705 -0.1083 -3.8757 17 6 4.4411 -0.6628 -4.9424 18 6 3.8210 -1.6346 -5.7249 19 16 4.3755 -2.5353 -7.1327 20 6 2.8866 -3.3648 -7.2192 21 7 2.0894 -2.9963 -6.2890 22 6 2.5177 -2.0505 -5.4314 23 6 1.8555 -1.4641 -4.3338 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 0.7096 1.1615 3.4844 28 1 1.8664 -2.5519 -2.1650 29 1 1.6467 -2.5987 -0.3993 30 1 0.3556 -1.9519 -1.4400 31 1 2.1024 1.1190 -2.2604 32 1 0.6813 0.1055 -2.6087 33 1 4.2510 0.6448 -3.2689 34 1 5.4472 -0.3447 -5.1724 35 1 2.6488 -4.1103 -7.9635 36 1 0.8489 -1.7694 -4.0890 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658347738.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:01 Heat of formation + Delta-G solvation = 66.046159 kcal Electronic energy + Delta-G solvation = -18659.354294 eV Core-core repulsion = 15849.238367 eV Total energy + Delta-G solvation = -2810.115927 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.42258 -37.93650 -36.29396 -32.97282 -31.32687 -30.14637 -28.42979 -26.72595 -25.24668 -25.03795 -23.57376 -22.45677 -20.60144 -19.23303 -18.36131 -16.51360 -16.10561 -16.02758 -15.33185 -14.83078 -14.66021 -14.29654 -14.12794 -13.67799 -13.42049 -13.16019 -12.55272 -12.15196 -11.86561 -11.78506 -11.46228 -11.08534 -11.01024 -10.98376 -10.74663 -10.60711 -10.47783 -10.06839 -10.02032 -9.83682 -9.73714 -8.93924 -8.60688 -8.39163 -8.07825 -7.19561 -6.01981 -4.05459 0.41963 1.19658 1.20835 1.64633 2.36997 3.31155 3.37554 3.41262 3.71399 3.94195 4.41820 4.61711 4.90614 5.11264 5.19026 5.20240 5.30516 5.37887 5.60287 5.75227 6.00076 6.10249 6.14025 6.21882 6.24921 6.36410 6.64372 6.70285 6.75709 6.82139 6.88153 7.09293 7.42253 7.52911 7.69151 7.82391 8.09205 8.34920 8.55841 9.00484 9.59613 11.05132 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.035696 B = 0.003733 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.220020 B = 7498.929533 C = 7577.189536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.040 0.960 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.528 5.528 13 C 0.031 3.969 14 C 0.087 3.913 15 C -0.046 4.046 16 C -0.070 4.070 17 C -0.081 4.081 18 C -0.178 4.178 19 S 0.073 5.927 20 C 0.059 3.941 21 N -0.461 5.461 22 C 0.072 3.928 23 C -0.058 4.058 24 H 0.088 0.912 25 H 0.007 0.993 26 H 0.032 0.968 27 H 0.260 0.740 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.018 0.982 31 H 0.081 0.919 32 H 0.039 0.961 33 H 0.139 0.861 34 H 0.129 0.871 35 H 0.200 0.800 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.904 -3.879 -18.067 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.105 3.895 3 H 0.058 0.942 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.251 5.251 13 C -0.118 4.118 14 C -0.041 4.041 15 C -0.050 4.050 16 C -0.092 4.092 17 C -0.104 4.104 18 C -0.297 4.297 19 S 0.326 5.674 20 C -0.247 4.247 21 N -0.173 5.173 22 C -0.047 4.047 23 C -0.080 4.080 24 H 0.107 0.893 25 H 0.026 0.974 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.036 0.964 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.157 0.843 34 H 0.147 0.853 35 H 0.217 0.783 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.659 -4.167 -18.466 19.758 hybrid contribution -1.130 -0.163 1.396 1.803 sum 4.529 -4.331 -17.070 18.184 Atomic orbital electron populations 1.22415 1.00762 0.99513 1.00540 1.19346 0.89836 0.94497 0.85832 0.94238 1.21093 1.30492 1.12504 0.89550 0.91952 1.24918 0.95220 0.95159 0.98985 1.69882 1.37070 1.23101 1.23410 0.86519 0.78500 0.80022 0.82483 1.20690 1.21387 1.19961 1.62398 1.58865 1.02396 1.01446 1.22308 0.96136 0.91881 1.01465 1.21094 0.96720 0.97567 0.88765 1.19613 0.94518 0.95258 0.95563 1.21147 0.93782 0.99095 0.95196 1.20301 0.99730 0.95437 0.94884 1.23737 0.98853 1.05112 1.01959 1.83834 1.19632 1.36986 1.26985 1.27988 0.93090 1.03300 1.00273 1.66180 1.34489 1.12662 1.03950 1.19153 0.91656 0.96174 0.97672 1.20294 1.00212 0.95456 0.91994 0.89289 0.97429 0.94931 0.93009 0.93711 0.90773 0.96372 0.90079 0.94327 0.84294 0.85278 0.78312 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.22 37.16 0.31 -3.78 16 2 C 0.21 5.14 2.31 -68.87 -0.16 4.98 16 3 H 0.04 1.05 7.93 -51.93 -0.41 0.64 16 4 C -0.50 -13.40 7.91 -34.44 -0.27 -13.67 16 5 H 0.06 1.70 7.12 -52.49 -0.37 1.33 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -25.11 11.32 55.43 0.63 -24.48 16 8 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.53 -10.98 4.69 -237.73 -1.12 -12.10 16 13 C 0.03 0.60 8.22 60.07 0.49 1.10 16 14 C 0.09 1.50 4.67 -4.98 -0.02 1.48 16 15 C -0.05 -0.71 4.85 -105.16 -0.51 -1.22 16 16 C -0.07 -0.97 9.68 -39.59 -0.38 -1.35 16 17 C -0.08 -1.02 10.07 -39.39 -0.40 -1.42 16 18 C -0.18 -2.41 6.56 -38.55 -0.25 -2.66 16 19 S 0.07 0.76 23.17 -107.50 -2.49 -1.73 16 20 C 0.06 0.62 12.10 51.14 0.62 1.24 16 21 N -0.46 -6.57 10.57 -12.95 -0.14 -6.71 16 22 C 0.07 1.09 7.00 -84.96 -0.59 0.50 16 23 C -0.06 -0.89 7.90 -39.29 -0.31 -1.20 16 24 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 25 H 0.01 0.15 6.91 -51.93 -0.36 -0.21 16 26 H 0.03 0.75 6.42 -51.93 -0.33 0.42 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.04 0.81 6.16 -51.93 -0.32 0.49 16 29 H 0.07 1.58 6.76 -51.93 -0.35 1.23 16 30 H 0.02 0.35 6.46 -51.93 -0.34 0.01 16 31 H 0.08 1.36 7.87 -51.93 -0.41 0.95 16 32 H 0.04 0.67 6.99 -51.93 -0.36 0.31 16 33 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 34 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 35 H 0.20 1.28 8.06 -52.48 -0.42 0.85 16 36 H 0.13 1.99 7.98 -52.49 -0.42 1.57 16 LS Contribution 304.55 15.07 4.59 4.59 Total: -1.00 -29.48 304.55 -9.52 -39.00 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.39 Total: -0.22 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -1.58 Total: -14.52 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: -0.63 Total: -43.29 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.49 Total: -1.73 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.48 -9.52 -39.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658347738.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.045 kcal (2) G-P(sol) polarization free energy of solvation -29.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds