Wall clock time and date at job start Mon Mar 30 2020 01:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47200 * 2 1 4 4 C 1.50692 * 109.47715 * 120.00033 * 2 1 3 5 5 H 1.08001 * 120.00030 * 119.99264 * 4 2 1 6 6 C 1.37879 * 120.00390 * 300.00496 * 4 2 1 7 7 N 1.31513 * 119.99459 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00173 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47249 * 89.99894 * 8 6 4 10 10 H 1.48507 * 109.47047 * 209.99654 * 8 6 4 11 11 H 1.48497 * 109.47610 * 329.99794 * 8 6 4 12 12 N 1.46902 * 109.47099 * 240.00674 * 2 1 3 13 13 C 1.46904 * 110.99563 * 306.04327 * 12 2 1 14 14 C 1.46895 * 111.00326 * 69.99317 * 12 2 1 15 15 C 1.50703 * 109.47244 * 170.00141 * 14 12 2 16 16 C 1.38794 * 119.60854 * 270.02168 * 15 14 12 17 17 C 1.37657 * 120.06189 * 179.97438 * 16 15 14 18 18 C 1.39331 * 119.95718 * 359.97438 * 17 16 15 19 19 S 1.76080 * 131.73474 * 180.02562 * 18 17 16 20 20 C 1.70653 * 90.82660 * 179.97438 * 19 18 17 21 21 N 1.27931 * 111.52169 * 359.74196 * 20 19 18 22 22 C 1.34668 * 117.84610 * 0.48320 * 21 20 19 23 23 C 1.36172 * 119.60900 * 90.00340 * 15 14 12 24 24 H 1.08999 * 109.46834 * 299.99702 * 1 2 3 25 25 H 1.08998 * 109.47427 * 59.99799 * 1 2 3 26 26 H 1.08997 * 109.46907 * 180.02562 * 1 2 3 27 27 H 0.96999 * 119.99626 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.46819 * 183.95697 * 13 12 2 29 29 H 1.08997 * 109.46988 * 303.94920 * 13 12 2 30 30 H 1.08991 * 109.47066 * 63.95864 * 13 12 2 31 31 H 1.09005 * 109.46920 * 50.00798 * 14 12 2 32 32 H 1.08999 * 109.47741 * 290.00668 * 14 12 2 33 33 H 1.07998 * 119.97077 * 359.96217 * 16 15 14 34 34 H 1.08001 * 120.01788 * 179.97438 * 17 16 15 35 35 H 1.08004 * 124.23562 * 179.97438 * 20 19 18 36 36 H 1.07999 * 119.79020 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3216 -1.1204 4.0077 9 1 3.6299 -0.5459 4.4121 10 1 1.3434 -0.9494 5.1119 11 1 2.4862 -2.5663 3.7118 12 7 2.0196 -0.6924 -1.1995 13 6 1.4342 -2.0354 -1.3079 14 6 1.7528 0.0973 -2.4091 15 6 2.4772 -0.5161 -3.5795 16 6 3.7705 -0.1083 -3.8757 17 6 4.4411 -0.6628 -4.9424 18 6 3.8210 -1.6346 -5.7249 19 16 4.3755 -2.5353 -7.1327 20 6 2.8866 -3.3648 -7.2192 21 7 2.0894 -2.9963 -6.2890 22 6 2.5177 -2.0505 -5.4314 23 6 1.8555 -1.4641 -4.3338 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 0.7096 1.1615 3.4844 28 1 1.8664 -2.5519 -2.1650 29 1 1.6467 -2.5987 -0.3993 30 1 0.3556 -1.9519 -1.4400 31 1 2.1024 1.1190 -2.2604 32 1 0.6813 0.1055 -2.6087 33 1 4.2510 0.6448 -3.2689 34 1 5.4472 -0.3447 -5.1724 35 1 2.6488 -4.1103 -7.9635 36 1 0.8489 -1.7694 -4.0890 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658347738.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:01 Heat of formation + Delta-G solvation = 47.993193 kcal Electronic energy + Delta-G solvation = -18660.137129 eV Core-core repulsion = 15849.238367 eV Total energy + Delta-G solvation = -2810.898762 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.45091 -39.34527 -37.61352 -34.82344 -32.69430 -31.22078 -30.18283 -28.16091 -27.25484 -26.08323 -25.06008 -23.54069 -21.89039 -20.87162 -19.32900 -18.24515 -17.39567 -17.11342 -17.03256 -16.21427 -15.93151 -15.64749 -15.35561 -14.98243 -14.78294 -14.52813 -14.27076 -13.59079 -13.28614 -13.02673 -12.96527 -12.74416 -12.69384 -12.52581 -12.43944 -12.22511 -12.06943 -11.93447 -11.58928 -11.05375 -10.91366 -10.64815 -10.47229 -9.65293 -9.07056 -8.83975 -8.09273 -6.19545 -0.53162 0.11820 0.32635 0.74380 1.40238 1.43561 1.44561 1.54453 2.43705 2.62923 3.04448 3.20067 3.55271 3.63252 3.84321 4.14618 4.21987 4.30263 4.50541 4.53619 4.61781 4.67293 4.75410 4.81616 4.89793 4.94716 5.12804 5.13645 5.15618 5.18676 5.51791 5.58376 5.70614 5.71918 5.80261 6.20569 6.46643 6.60577 6.70802 6.92927 7.49424 8.96631 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.035696 B = 0.003733 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.220020 B = 7498.929533 C = 7577.189536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.215 3.785 3 H 0.014 0.986 4 C -0.513 4.513 5 H 0.054 0.946 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.957 3.043 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.535 5.535 13 C 0.041 3.959 14 C 0.092 3.908 15 C -0.054 4.054 16 C -0.084 4.084 17 C -0.071 4.071 18 C -0.204 4.204 19 S 0.135 5.865 20 C 0.068 3.932 21 N -0.502 5.502 22 C 0.056 3.944 23 C -0.074 4.074 24 H 0.062 0.938 25 H 0.026 0.974 26 H 0.031 0.969 27 H 0.261 0.739 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.019 0.981 31 H 0.082 0.918 32 H 0.037 0.963 33 H 0.149 0.851 34 H 0.159 0.841 35 H 0.241 0.759 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.353 -4.950 -19.875 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.109 3.891 3 H 0.032 0.968 4 C -0.551 4.551 5 H 0.072 0.928 6 C -0.185 4.185 7 N -0.560 5.560 8 Si 0.783 3.217 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.258 5.258 13 C -0.108 4.108 14 C -0.036 4.036 15 C -0.057 4.057 16 C -0.105 4.105 17 C -0.094 4.094 18 C -0.322 4.322 19 S 0.388 5.612 20 C -0.236 4.236 21 N -0.216 5.216 22 C -0.062 4.062 23 C -0.095 4.095 24 H 0.081 0.919 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.166 0.834 34 H 0.176 0.824 35 H 0.257 0.743 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.123 -5.244 -20.300 22.143 hybrid contribution -1.518 0.113 1.758 2.325 sum 5.605 -5.131 -18.542 20.038 Atomic orbital electron populations 1.22221 1.00347 0.99221 1.00110 1.19104 0.90011 0.93153 0.86877 0.96814 1.21345 1.30474 1.12392 0.90899 0.92802 1.25637 0.95411 0.95823 1.01663 1.70001 1.37872 1.24164 1.23974 0.85577 0.78026 0.79011 0.79122 1.20204 1.21014 1.19599 1.62263 1.58964 1.02881 1.01698 1.22194 0.96258 0.91267 1.01050 1.21054 0.97054 0.97386 0.88113 1.19394 0.95302 0.95948 0.95087 1.21277 0.93303 0.99801 0.96154 1.20600 1.00638 0.94364 0.93756 1.24141 0.98797 1.05692 1.03589 1.83641 1.18239 1.35077 1.24218 1.28777 0.92795 1.02671 0.99373 1.66229 1.36088 1.13857 1.05399 1.19298 0.92449 0.96654 0.97842 1.20241 1.00149 0.96164 0.92980 0.91910 0.95530 0.95014 0.92986 0.92119 0.92727 0.96228 0.89930 0.94486 0.83371 0.82381 0.74343 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.69 8.22 71.98 0.59 -7.10 16 2 C 0.22 10.76 2.31 44.16 0.10 10.86 16 3 H 0.01 0.76 7.93 -2.38 -0.02 0.74 16 4 C -0.51 -28.07 7.91 25.60 0.20 -27.87 16 5 H 0.05 2.98 7.12 -2.91 -0.02 2.96 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -52.45 11.32 21.45 0.24 -52.21 16 8 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 9 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 N -0.53 -22.59 4.69 -906.06 -4.25 -26.84 16 13 C 0.04 1.62 8.22 127.69 1.05 2.67 16 14 C 0.09 3.22 4.67 85.56 0.40 3.62 16 15 C -0.05 -1.66 4.85 -20.21 -0.10 -1.76 16 16 C -0.08 -2.22 9.68 22.27 0.22 -2.00 16 17 C -0.07 -1.65 10.07 22.40 0.23 -1.42 16 18 C -0.20 -5.07 6.56 22.94 0.15 -4.92 16 19 S 0.14 2.31 23.17 -56.49 -1.31 1.01 16 20 C 0.07 1.23 12.10 130.81 1.58 2.81 16 21 N -0.50 -13.53 10.57 -194.75 -2.06 -15.59 16 22 C 0.06 1.65 7.00 39.78 0.28 1.93 16 23 C -0.07 -2.28 7.90 22.46 0.18 -2.10 16 24 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 25 H 0.03 1.13 6.91 -2.39 -0.02 1.11 16 26 H 0.03 1.48 6.42 -2.39 -0.02 1.47 16 27 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 28 H 0.06 2.21 6.16 -2.39 -0.01 2.20 16 29 H 0.05 2.36 6.76 -2.39 -0.02 2.35 16 30 H 0.02 0.76 6.46 -2.39 -0.02 0.74 16 31 H 0.08 2.82 7.87 -2.38 -0.02 2.80 16 32 H 0.04 1.30 6.99 -2.39 -0.02 1.28 16 33 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 34 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.24 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.12 3.83 7.98 -2.91 -0.02 3.81 16 Total: -1.00 -63.85 304.55 1.06 -62.78 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 1.09 Total: 9.22 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 5.33 Total: -24.11 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -6.07 Total: -94.64 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.31 Total: 1.01 kcal Total: -63.85 1.06 -62.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658347738.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.777 kcal (2) G-P(sol) polarization free energy of solvation -63.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds