Wall clock time and date at job start Mon Mar 30 2020 01:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.47764 * 2 1 4 4 C 1.34218 * 117.00193 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00697 * 359.97438 * 4 3 2 6 6 C 1.50712 * 119.99797 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.46889 * 60.00268 * 6 4 3 8 8 C 1.52996 * 109.46970 * 179.97438 * 6 4 3 9 9 C 1.50702 * 109.47159 * 294.99838 * 8 6 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 6 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 6 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48504 * 109.47196 * 60.00645 * 13 11 9 15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47679 * 300.00280 * 13 11 9 17 17 C 1.50695 * 109.47025 * 299.99982 * 6 4 3 18 18 O 1.21253 * 120.00082 * 270.00187 * 17 6 4 19 19 C 1.47165 * 120.00095 * 89.99992 * 17 6 4 20 20 C 1.39855 * 120.17200 * 359.72374 * 19 17 6 21 21 C 1.37889 * 119.82571 * 179.74263 * 20 19 17 22 22 C 1.38407 * 120.16843 * 0.53276 * 21 20 19 23 23 C 1.38397 * 120.35016 * 359.71991 * 22 21 20 24 24 C 1.37890 * 120.17469 * 0.02562 * 23 22 21 25 25 H 1.08996 * 109.47019 * 300.00456 * 1 2 3 26 26 H 1.09008 * 109.46524 * 59.99557 * 1 2 3 27 27 H 1.08995 * 109.47299 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47274 * 239.99868 * 2 1 3 29 29 H 1.09003 * 109.47027 * 119.99945 * 2 1 3 30 30 H 1.09004 * 109.47066 * 175.00041 * 8 6 4 31 31 H 1.08994 * 109.47405 * 54.99871 * 8 6 4 32 32 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 33 33 H 1.08003 * 120.08770 * 359.97438 * 20 19 17 34 34 H 1.07997 * 119.91499 * 180.27591 * 21 20 19 35 35 H 1.08000 * 119.82304 * 179.69818 * 22 21 20 36 36 H 1.08004 * 119.91594 * 179.97438 * 23 22 21 37 37 H 1.08003 * 120.08853 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0142 1.3690 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9209 2.9374 -0.0012 7 1 3.5853 3.4697 0.8888 8 6 5.4487 2.8572 -0.0010 9 6 5.9189 2.2319 1.2870 10 1 5.1998 1.9222 2.0310 11 6 7.2668 2.0494 1.5130 12 7 8.1423 2.4261 0.6069 13 14 7.8491 1.2672 3.1063 14 1 7.2773 -0.0982 3.2254 15 1 9.3318 1.1850 3.1043 16 1 7.4011 2.0934 4.2561 17 6 3.4560 3.6727 -1.2316 18 8 4.1091 3.6207 -2.2519 19 6 2.2093 4.4539 -1.1950 20 6 1.4502 4.5116 -0.0218 21 6 0.2860 5.2500 0.0061 22 6 -0.1375 5.9240 -1.1261 23 6 0.6054 5.8675 -2.2925 24 6 1.7746 5.1376 -2.3348 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.8652 3.8605 -0.0910 31 1 5.7808 2.2491 -0.8425 32 1 9.0906 2.2981 0.7661 33 1 1.7769 3.9822 0.8611 34 1 -0.2990 5.2991 0.9126 35 1 -1.0527 6.4967 -1.0994 36 1 0.2682 6.3958 -3.1720 37 1 2.3530 5.0942 -3.2459 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001706004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:56 Heat of formation + Delta-G solvation = -103.124715 kcal Electronic energy + Delta-G solvation = -21346.850089 eV Core-core repulsion = 18054.352741 eV Total energy + Delta-G solvation = -3292.497348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.41029 -39.35634 -37.95366 -36.15986 -33.59900 -32.15296 -31.37064 -30.95629 -30.61357 -26.54786 -24.03246 -23.41025 -22.51111 -21.87683 -20.75370 -19.05974 -17.56962 -17.19441 -16.38785 -16.13496 -15.72405 -15.48831 -15.09129 -14.47776 -14.28160 -14.01525 -13.74467 -13.48032 -13.21535 -12.94345 -12.76325 -12.37862 -12.18767 -11.70435 -11.62372 -11.44860 -11.41518 -11.10902 -10.91556 -10.69791 -10.40828 -10.18583 -10.01379 -9.61544 -9.34642 -9.01298 -8.97821 -8.92053 -8.31464 -5.94845 -3.96309 0.77023 1.39405 2.48015 2.89107 3.19817 3.37439 3.41722 3.44802 3.89845 4.26715 4.52949 4.83332 4.91240 5.03091 5.04760 5.08318 5.25753 5.32971 5.41071 5.41936 5.43093 5.53128 5.68532 5.83251 5.85401 5.89449 6.00449 6.03525 6.31741 6.37480 6.42381 6.52683 6.88772 6.91683 7.51454 7.68794 7.80619 7.97744 8.33264 8.44239 9.02715 9.65071 11.16816 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.016760 B = 0.005828 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.217899 B = 4802.869536 C = 5688.717208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 O -0.368 6.368 4 C 0.469 3.531 5 O -0.458 6.458 6 C -0.115 4.115 7 H 0.120 0.880 8 C 0.044 3.956 9 C -0.509 4.509 10 H 0.052 0.948 11 C 0.061 3.939 12 N -0.893 5.893 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.403 3.597 18 O -0.433 6.433 19 C -0.157 4.157 20 C -0.059 4.059 21 C -0.135 4.135 22 C -0.095 4.095 23 C -0.138 4.138 24 C -0.064 4.064 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.039 0.961 32 H 0.261 0.739 33 H 0.135 0.865 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.437 3.967 -1.880 19.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 O -0.287 6.287 4 C 0.309 3.691 5 O -0.340 6.340 6 C -0.135 4.135 7 H 0.138 0.862 8 C 0.007 3.993 9 C -0.547 4.547 10 H 0.070 0.930 11 C -0.140 4.140 12 N -0.532 5.532 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C 0.279 3.721 18 O -0.306 6.306 19 C -0.158 4.158 20 C -0.077 4.077 21 C -0.153 4.153 22 C -0.113 4.113 23 C -0.156 4.156 24 C -0.082 4.082 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.658 3.594 -2.471 19.161 hybrid contribution 0.349 -0.614 0.997 1.222 sum -18.309 2.979 -1.475 18.608 Atomic orbital electron populations 1.21769 0.93150 1.02442 1.03218 1.22899 0.94810 0.81213 1.02452 1.86521 1.25471 1.31562 1.85167 1.23126 0.79819 0.92332 0.73859 1.90717 1.59753 1.41883 1.41677 1.21931 1.03209 0.89825 0.98535 0.86214 1.19055 0.82119 0.98780 0.99303 1.20899 0.91896 1.40226 1.01681 0.92954 1.24910 0.96777 0.95585 0.96777 1.69957 1.01678 1.47435 1.34138 0.86636 0.77506 0.80024 0.83704 1.20255 1.21260 1.20283 1.22393 0.83081 0.78012 0.88635 1.90514 1.53235 1.53999 1.32833 1.20599 0.97845 1.01909 0.95422 1.21556 0.93466 0.95343 0.97305 1.21118 0.97034 0.98422 0.98692 1.21360 0.99100 0.97862 0.93011 1.21089 0.95523 1.00510 0.98452 1.21435 0.95350 0.93641 0.97816 0.91628 0.91766 0.90714 0.91663 0.91371 0.94763 0.94265 0.92889 0.84730 0.85545 0.85948 0.85719 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 37.16 0.38 -1.11 16 2 C 0.06 0.85 6.19 37.16 0.23 1.08 16 3 O -0.37 -6.24 10.00 -39.23 -0.39 -6.63 16 4 C 0.47 9.87 6.90 36.01 0.25 10.12 16 5 O -0.46 -11.40 14.73 -18.75 -0.28 -11.68 16 6 C -0.12 -2.42 2.02 -92.92 -0.19 -2.60 16 7 H 0.12 2.18 6.48 -51.93 -0.34 1.85 16 8 C 0.04 1.18 3.62 -27.88 -0.10 1.08 16 9 C -0.51 -14.55 7.75 -34.44 -0.27 -14.82 16 10 H 0.05 1.45 7.61 -52.49 -0.40 1.05 16 11 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 12 N -0.89 -27.53 13.29 55.43 0.74 -26.79 16 13 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 C 0.40 7.80 6.09 -30.69 -0.19 7.62 16 18 O -0.43 -9.61 16.27 5.58 0.09 -9.52 16 19 C -0.16 -2.42 5.87 -105.07 -0.62 -3.04 16 20 C -0.06 -0.76 9.23 -39.10 -0.36 -1.12 16 21 C -0.13 -1.41 10.03 -39.65 -0.40 -1.81 16 22 C -0.10 -0.92 10.04 -39.46 -0.40 -1.32 16 23 C -0.14 -1.47 10.03 -39.65 -0.40 -1.87 16 24 C -0.06 -0.87 9.60 -39.11 -0.38 -1.25 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 29 H 0.07 0.97 8.13 -51.93 -0.42 0.54 16 30 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.04 1.18 7.83 -51.93 -0.41 0.77 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.13 1.68 6.37 -52.48 -0.33 1.34 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.13 1.78 7.65 -52.48 -0.40 1.38 16 LS Contribution 325.51 15.07 4.91 4.91 Total: -1.00 -34.52 325.51 -7.30 -41.82 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -4.82 Total: -2.02 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -2.52 Total: -7.35 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.74 Total: -26.79 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.58 Total: -27.83 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.52 -7.30 -41.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001706004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.308 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds