Wall clock time and date at job start Mon Mar 30 2020 01:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.47764 * 2 1 4 4 C 1.34218 * 117.00193 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00697 * 359.97438 * 4 3 2 6 6 C 1.50712 * 119.99797 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.46889 * 60.00268 * 6 4 3 8 8 C 1.52996 * 109.46970 * 179.97438 * 6 4 3 9 9 C 1.50702 * 109.47159 * 294.99838 * 8 6 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 6 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 6 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48504 * 109.47196 * 60.00645 * 13 11 9 15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47679 * 300.00280 * 13 11 9 17 17 C 1.50695 * 109.47025 * 299.99982 * 6 4 3 18 18 O 1.21253 * 120.00082 * 270.00187 * 17 6 4 19 19 C 1.47165 * 120.00095 * 89.99992 * 17 6 4 20 20 C 1.39855 * 120.17200 * 359.72374 * 19 17 6 21 21 C 1.37889 * 119.82571 * 179.74263 * 20 19 17 22 22 C 1.38407 * 120.16843 * 0.53276 * 21 20 19 23 23 C 1.38397 * 120.35016 * 359.71991 * 22 21 20 24 24 C 1.37890 * 120.17469 * 0.02562 * 23 22 21 25 25 H 1.08996 * 109.47019 * 300.00456 * 1 2 3 26 26 H 1.09008 * 109.46524 * 59.99557 * 1 2 3 27 27 H 1.08995 * 109.47299 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47274 * 239.99868 * 2 1 3 29 29 H 1.09003 * 109.47027 * 119.99945 * 2 1 3 30 30 H 1.09004 * 109.47066 * 175.00041 * 8 6 4 31 31 H 1.08994 * 109.47405 * 54.99871 * 8 6 4 32 32 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 33 33 H 1.08003 * 120.08770 * 359.97438 * 20 19 17 34 34 H 1.07997 * 119.91499 * 180.27591 * 21 20 19 35 35 H 1.08000 * 119.82304 * 179.69818 * 22 21 20 36 36 H 1.08004 * 119.91594 * 179.97438 * 23 22 21 37 37 H 1.08003 * 120.08853 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0142 1.3690 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9209 2.9374 -0.0012 7 1 3.5853 3.4697 0.8888 8 6 5.4487 2.8572 -0.0010 9 6 5.9189 2.2319 1.2870 10 1 5.1998 1.9222 2.0310 11 6 7.2668 2.0494 1.5130 12 7 8.1423 2.4261 0.6069 13 14 7.8491 1.2672 3.1063 14 1 7.2773 -0.0982 3.2254 15 1 9.3318 1.1850 3.1043 16 1 7.4011 2.0934 4.2561 17 6 3.4560 3.6727 -1.2316 18 8 4.1091 3.6207 -2.2519 19 6 2.2093 4.4539 -1.1950 20 6 1.4502 4.5116 -0.0218 21 6 0.2860 5.2500 0.0061 22 6 -0.1375 5.9240 -1.1261 23 6 0.6054 5.8675 -2.2925 24 6 1.7746 5.1376 -2.3348 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.8652 3.8605 -0.0910 31 1 5.7808 2.2491 -0.8425 32 1 9.0906 2.2981 0.7661 33 1 1.7769 3.9822 0.8611 34 1 -0.2990 5.2991 0.9126 35 1 -1.0527 6.4967 -1.0994 36 1 0.2682 6.3958 -3.1720 37 1 2.3530 5.0942 -3.2459 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001706004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:55 Heat of formation + Delta-G solvation = -123.929814 kcal Electronic energy + Delta-G solvation = -21347.752266 eV Core-core repulsion = 18054.352741 eV Total energy + Delta-G solvation = -3293.399525 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.97545 -40.72133 -39.16536 -37.75541 -35.63796 -33.89084 -32.45176 -32.07024 -31.80544 -28.49364 -25.28417 -25.07048 -23.58470 -23.23274 -22.14288 -20.59793 -19.09886 -18.79808 -18.01235 -17.68546 -17.32768 -16.64671 -16.55448 -16.28068 -15.45952 -15.32540 -15.03118 -14.63443 -14.48001 -14.37933 -14.22275 -13.82572 -13.44686 -13.35869 -13.02642 -12.87084 -12.63704 -12.58661 -12.55031 -12.41040 -11.99897 -11.84144 -11.51086 -11.49543 -11.42789 -10.72073 -10.57511 -9.90079 -9.87627 -8.20406 -6.30168 -0.37198 0.50023 1.05558 1.30131 1.36940 1.42271 1.49088 1.76580 2.39311 2.88175 2.91424 3.13932 3.69939 3.85114 3.89785 4.01242 4.08154 4.12744 4.26353 4.27924 4.35677 4.45951 4.55169 4.64781 4.88065 4.95193 4.95767 5.12984 5.14054 5.25588 5.40361 5.42974 5.45656 5.51893 5.55495 5.71827 6.02571 6.06367 6.33834 6.76981 6.80156 7.36053 8.92507 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.016760 B = 0.005828 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.217899 B = 4802.869536 C = 5688.717208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.048 3.952 3 O -0.351 6.351 4 C 0.478 3.522 5 O -0.507 6.507 6 C -0.117 4.117 7 H 0.150 0.850 8 C 0.054 3.946 9 C -0.519 4.519 10 H 0.060 0.940 11 C -0.001 4.001 12 N -0.935 5.935 13 Si 0.966 3.034 14 H -0.276 1.276 15 H -0.282 1.282 16 H -0.255 1.255 17 C 0.407 3.593 18 O -0.481 6.481 19 C -0.185 4.185 20 C -0.064 4.064 21 C -0.129 4.129 22 C -0.077 4.077 23 C -0.134 4.134 24 C -0.079 4.079 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.011 0.989 31 H -0.010 1.010 32 H 0.263 0.737 33 H 0.136 0.864 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.154 0.846 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.377 4.898 -0.052 23.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.026 4.026 3 O -0.269 6.269 4 C 0.319 3.681 5 O -0.393 6.393 6 C -0.136 4.136 7 H 0.167 0.833 8 C 0.017 3.983 9 C -0.557 4.557 10 H 0.078 0.922 11 C -0.199 4.199 12 N -0.576 5.576 13 Si 0.790 3.210 14 H -0.202 1.202 15 H -0.207 1.207 16 H -0.180 1.180 17 C 0.287 3.713 18 O -0.357 6.357 19 C -0.185 4.185 20 C -0.082 4.082 21 C -0.147 4.147 22 C -0.094 4.094 23 C -0.152 4.152 24 C -0.097 4.097 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.120 0.880 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.029 0.971 31 H 0.008 0.992 32 H 0.072 0.928 33 H 0.154 0.846 34 H 0.179 0.821 35 H 0.182 0.818 36 H 0.172 0.828 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.656 4.545 -0.627 23.115 hybrid contribution 1.406 -0.866 0.379 1.694 sum -21.250 3.679 -0.248 21.567 Atomic orbital electron populations 1.21785 0.89195 1.04462 1.03983 1.23345 0.97772 0.79374 1.02087 1.86508 1.22630 1.33659 1.84104 1.22999 0.80928 0.91529 0.72595 1.90693 1.61191 1.43167 1.44297 1.21762 0.99526 0.91144 1.01205 0.83258 1.18700 0.86452 0.96165 0.96973 1.21264 0.92379 1.39853 1.02199 0.92180 1.25939 0.97042 0.96138 1.00733 1.70118 1.02039 1.48868 1.36537 0.85487 0.77056 0.78965 0.79458 1.20154 1.20700 1.17971 1.22643 0.84261 0.77451 0.86981 1.90490 1.55173 1.56085 1.33998 1.20275 0.96793 1.03795 0.97685 1.21671 0.94334 0.96015 0.96230 1.21521 0.95834 0.96896 1.00403 1.21890 0.99628 0.96202 0.91720 1.21439 0.94037 0.99409 1.00274 1.21509 0.96780 0.94536 0.96875 0.90420 0.91366 0.88043 0.92507 0.91523 0.97111 0.99204 0.92782 0.84630 0.82131 0.81786 0.82786 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 10.29 71.98 0.74 -1.61 16 2 C 0.05 1.31 6.19 71.98 0.45 1.75 16 3 O -0.35 -11.82 10.00 -51.30 -0.51 -12.33 16 4 C 0.48 20.84 6.90 71.24 0.49 21.33 16 5 O -0.51 -26.54 14.73 21.97 0.32 -26.21 16 6 C -0.12 -5.14 2.02 -12.29 -0.02 -5.16 16 7 H 0.15 5.54 6.48 -2.39 -0.02 5.53 16 8 C 0.05 3.10 3.62 29.85 0.11 3.21 16 9 C -0.52 -30.80 7.75 25.60 0.20 -30.60 16 10 H 0.06 3.38 7.61 -2.91 -0.02 3.36 16 11 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 12 N -0.94 -60.22 13.29 21.45 0.28 -59.94 16 13 Si 0.97 46.43 29.54 68.60 2.03 48.46 16 14 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 15 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 16 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 17 C 0.41 16.70 6.09 28.03 0.17 16.87 16 18 O -0.48 -23.24 16.27 -2.95 -0.05 -23.28 16 19 C -0.18 -5.68 5.87 -20.15 -0.12 -5.80 16 20 C -0.06 -1.54 9.23 22.58 0.21 -1.33 16 21 C -0.13 -2.11 10.03 22.23 0.22 -1.88 16 22 C -0.08 -1.08 10.04 22.35 0.22 -0.86 16 23 C -0.13 -2.40 10.03 22.23 0.22 -2.18 16 24 C -0.08 -2.09 9.60 22.58 0.22 -1.88 16 25 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 29 H 0.07 1.85 8.13 -2.39 -0.02 1.84 16 30 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 31 H -0.01 -0.69 7.83 -2.39 -0.02 -0.71 16 32 H 0.26 15.93 8.31 -92.70 -0.77 15.15 16 33 H 0.14 3.11 6.37 -2.91 -0.02 3.09 16 34 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 36 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.12 3.36 7.65 -2.91 -0.02 3.34 16 Total: -1.00 -81.53 325.51 6.71 -74.82 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: 1.07 Total: 6.23 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 3.57 Total: -7.75 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: 0.28 Total: -59.94 kcal Atomic # 8 Polarization: -61.59 SS G_CDS: -0.24 Total: -61.83 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -81.53 6.71 -74.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001706004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.106 kcal (2) G-P(sol) polarization free energy of solvation -81.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds