Wall clock time and date at job start Mon Mar 30 2020 01:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30415 * 1 3 3 Si 1.86797 * 120.00402 * 2 1 4 4 H 1.48505 * 109.47246 * 270.00510 * 3 2 1 5 5 H 1.48504 * 109.47069 * 30.00224 * 3 2 1 6 6 H 1.48501 * 109.47343 * 150.00413 * 3 2 1 7 7 C 1.40924 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99756 * 359.97438 * 7 2 1 9 9 C 1.37991 * 120.00086 * 179.97438 * 7 2 1 10 10 C 1.39855 * 120.00068 * 179.97438 * 9 7 2 11 11 C 1.47806 * 121.62526 * 0.02562 * 10 9 7 12 12 C 1.39232 * 123.24820 * 289.44048 * 11 10 9 13 13 C 1.38385 * 118.28915 * 185.12301 * 12 11 10 14 14 C 1.38516 * 120.43580 * 359.77817 * 13 12 11 15 15 C 1.38941 * 120.84665 * 358.88562 * 14 13 12 16 16 C 1.37311 * 118.79919 * 0.59191 * 15 14 13 17 17 C 1.50463 * 123.19740 * 182.83398 * 16 15 14 18 18 C 1.51447 * 112.20894 * 260.99383 * 17 16 15 19 19 C 1.51090 * 113.54237 * 296.47191 * 18 17 16 20 20 C 1.39511 * 114.55731 * 181.20471 * 19 18 17 21 21 C 1.37721 * 121.61326 * 178.83032 * 20 19 18 22 22 C 1.38530 * 120.56485 * 359.86330 * 21 20 19 23 23 C 1.37608 * 119.21103 * 0.57757 * 22 21 20 24 24 C 1.39661 * 128.02219 * 0.90474 * 19 18 17 25 25 H 0.97008 * 119.99736 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.99603 * 359.97438 * 9 7 2 27 27 H 1.08006 * 120.85218 * 5.39694 * 12 11 10 28 28 H 1.07996 * 119.77797 * 179.75801 * 13 12 11 29 29 H 1.08007 * 119.57629 * 178.90097 * 14 13 12 30 30 H 1.08000 * 120.60142 * 180.57721 * 15 14 13 31 31 H 1.09008 * 108.93161 * 21.69030 * 17 16 15 32 32 H 1.08994 * 108.93825 * 140.37409 * 17 16 15 33 33 H 1.09000 * 108.67052 * 57.53045 * 18 17 16 34 34 H 1.09007 * 108.66527 * 175.56167 * 18 17 16 35 35 H 1.08008 * 119.19256 * 358.85656 * 20 19 18 36 36 H 1.08007 * 119.71749 * 179.87679 * 21 20 19 37 37 H 1.07998 * 120.39028 * 180.56003 * 22 21 20 38 38 H 1.07995 * 119.81164 * 180.08182 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3042 0.0000 0.0000 3 14 2.2383 1.6176 0.0000 4 1 2.4857 2.0464 -1.4001 5 1 1.4358 2.6526 0.7001 6 1 3.5359 1.4400 0.6999 7 6 2.0087 -1.2205 -0.0005 8 1 1.4687 -2.1557 -0.0005 9 6 3.3886 -1.2206 -0.0011 10 6 4.0878 -2.4318 -0.0011 11 6 3.3853 -3.7322 -0.0011 12 6 2.6816 -4.2197 1.0969 13 6 2.1528 -5.4963 1.0229 14 6 2.3207 -6.2601 -0.1204 15 6 3.0008 -5.7545 -1.2214 16 6 3.5172 -4.4840 -1.1538 17 6 4.2162 -3.8164 -2.3068 18 6 5.7237 -3.8982 -2.1874 19 6 6.2742 -3.1697 -0.9836 20 6 7.6639 -3.2092 -0.8674 21 6 8.3206 -2.5727 0.1623 22 6 7.6116 -1.8659 1.1198 23 6 6.2388 -1.8159 1.0380 24 6 5.5662 -2.4734 -0.0015 25 1 -0.4850 0.8401 0.0004 26 1 3.9286 -0.2852 -0.0015 27 1 2.5479 -3.6152 1.9820 28 1 1.6059 -5.8999 1.8621 29 1 1.9175 -7.2615 -0.1566 30 1 3.1214 -6.3501 -2.1142 31 1 3.9082 -4.2990 -3.2345 32 1 3.9217 -2.7675 -2.3396 33 1 6.0122 -4.9473 -2.1224 34 1 6.1686 -3.4698 -3.0856 35 1 8.2388 -3.7518 -1.6033 36 1 9.3976 -2.6250 0.2238 37 1 8.1300 -1.3603 1.9210 38 1 5.6765 -1.2665 1.7784 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043190979.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:54 Heat of formation + Delta-G solvation = 27.943505 kcal Electronic energy + Delta-G solvation = -20622.947170 eV Core-core repulsion = 17779.275381 eV Total energy + Delta-G solvation = -2843.671790 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.121 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.84485 -39.21628 -36.33928 -35.52204 -34.32964 -32.03248 -31.17693 -30.90722 -29.45421 -26.55242 -24.90930 -23.69103 -22.73607 -22.28181 -21.00649 -19.87352 -19.29572 -17.19230 -17.12438 -16.48635 -16.21340 -15.80816 -15.45985 -15.42873 -14.94806 -14.72104 -14.53401 -14.04393 -13.86453 -13.64968 -13.23421 -13.19083 -13.03168 -12.95780 -12.58343 -12.29155 -12.10733 -11.98092 -11.80532 -11.54635 -11.50085 -11.33364 -11.04590 -10.04796 -9.46360 -9.42412 -9.07707 -9.05910 -8.97050 -6.28359 0.54833 0.67552 0.74334 0.85861 1.17768 1.25658 1.39023 1.72565 2.02965 3.03482 3.17833 3.28250 3.99796 4.15045 4.18670 4.28778 4.35233 4.38021 4.42277 4.45790 4.54456 4.64808 4.81850 4.84261 4.89431 4.97433 5.02086 5.06774 5.11185 5.18451 5.31140 5.42425 5.52803 5.57709 5.66575 5.78825 5.80647 5.85271 6.01508 6.06047 6.18088 6.21692 6.35091 6.40994 6.53547 6.83581 6.99980 8.05925 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.012317 B = 0.008559 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.791220 B = 3270.447385 C = 4702.185572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.038 3.962 3 Si 0.964 3.036 4 H -0.252 1.252 5 H -0.258 1.258 6 H -0.249 1.249 7 C -0.431 4.431 8 H 0.055 0.945 9 C 0.036 3.964 10 C -0.355 4.355 11 C 0.032 3.968 12 C -0.147 4.147 13 C -0.135 4.135 14 C -0.154 4.154 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.065 4.065 18 C -0.052 4.052 19 C -0.118 4.118 20 C -0.128 4.128 21 C -0.155 4.155 22 C -0.124 4.124 23 C -0.157 4.157 24 C 0.024 3.976 25 H 0.300 0.700 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.128 0.872 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.705 -4.349 -2.334 10.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.181 4.181 3 Si 0.783 3.217 4 H -0.176 1.176 5 H -0.182 1.182 6 H -0.172 1.172 7 C -0.458 4.458 8 H 0.073 0.927 9 C 0.015 3.985 10 C -0.358 4.358 11 C 0.032 3.968 12 C -0.165 4.165 13 C -0.153 4.153 14 C -0.172 4.172 15 C -0.137 4.137 16 C -0.116 4.116 17 C -0.102 4.102 18 C -0.088 4.088 19 C -0.118 4.118 20 C -0.146 4.146 21 C -0.173 4.173 22 C -0.142 4.142 23 C -0.176 4.176 24 C 0.024 3.976 25 H 0.112 0.888 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.146 0.854 29 H 0.158 0.842 30 H 0.159 0.841 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.396 -4.236 -2.346 10.570 hybrid contribution -0.521 0.850 0.452 1.095 sum 8.874 -3.386 -1.894 9.685 Atomic orbital electron populations 1.69494 1.09630 1.32293 1.33496 1.27403 0.95676 1.04974 0.90012 0.85432 0.79747 0.75780 0.80771 1.17624 1.18221 1.17225 1.19418 0.92430 0.94129 1.39859 0.92671 1.20409 0.92835 0.94306 0.90918 1.18704 0.89560 0.90657 1.36925 1.18423 0.92770 0.93495 0.92071 1.21360 1.00928 0.95893 0.98304 1.21319 1.00534 0.94282 0.99116 1.21369 1.01687 1.00626 0.93491 1.21111 0.98468 0.94901 0.99248 1.19971 1.00692 0.94998 0.95922 1.19982 0.94975 1.00001 0.95271 1.20028 0.94186 0.99532 0.95077 1.20696 0.93819 1.00649 0.96652 1.21558 0.93680 1.00163 0.99194 1.21145 1.00424 0.99974 0.95778 1.21243 0.93388 0.99871 0.99729 1.21512 0.95112 1.02577 0.98367 1.18701 0.92553 0.94095 0.92227 0.88844 0.90171 0.88433 0.85373 0.84151 0.84052 0.90449 0.93014 0.90691 0.89409 0.84783 0.84211 0.84639 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.89 13.91 22.00 0.31 -42.59 16 2 C 0.04 1.91 5.54 85.56 0.47 2.39 16 3 Si 0.96 38.10 27.47 68.60 1.88 39.98 16 4 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 5 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 6 H -0.25 -9.74 6.37 99.48 0.63 -9.10 16 7 C -0.43 -23.33 9.22 22.87 0.21 -23.12 16 8 H 0.06 3.35 6.52 -2.91 -0.02 3.33 16 9 C 0.04 1.81 8.61 22.60 0.19 2.01 16 10 C -0.35 -16.89 3.49 -17.80 -0.06 -16.96 16 11 C 0.03 1.51 4.09 -20.50 -0.08 1.43 16 12 C -0.15 -6.66 9.25 22.54 0.21 -6.45 16 13 C -0.13 -5.14 10.04 22.37 0.22 -4.92 16 14 C -0.15 -5.26 10.04 22.50 0.23 -5.03 16 15 C -0.12 -4.20 9.90 22.22 0.22 -3.98 16 16 C -0.12 -4.74 5.18 -20.15 -0.10 -4.84 16 17 C -0.07 -2.38 5.18 29.27 0.15 -2.23 16 18 C -0.05 -1.65 5.21 29.46 0.15 -1.49 16 19 C -0.12 -4.37 5.84 -19.09 -0.11 -4.48 16 20 C -0.13 -3.96 9.46 22.45 0.21 -3.75 16 21 C -0.16 -4.54 10.00 22.22 0.22 -4.32 16 22 C -0.12 -4.02 10.08 22.19 0.22 -3.79 16 23 C -0.16 -6.24 9.49 22.59 0.21 -6.03 16 24 C 0.02 1.04 5.40 -19.90 -0.11 0.93 16 25 H 0.30 13.79 8.29 -92.70 -0.77 13.02 16 26 H 0.08 3.82 5.24 -2.91 -0.02 3.81 16 27 H 0.10 4.60 8.06 -2.91 -0.02 4.57 16 28 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 29 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 30 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 31 H 0.08 2.37 8.09 -2.38 -0.02 2.35 16 32 H 0.05 2.21 6.97 -2.39 -0.02 2.20 16 33 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 35 H 0.13 3.27 7.98 -2.91 -0.02 3.25 16 36 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 37 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 38 H 0.10 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -60.15 313.76 5.64 -54.51 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: 0.98 Total: 32.74 kcal Atomic # 6 Polarization: -87.11 SS G_CDS: 2.47 Total: -84.65 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.31 Total: -42.59 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 1.88 Total: 39.98 kcal Total: -60.15 5.64 -54.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043190979.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.454 kcal (2) G-P(sol) polarization free energy of solvation -60.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds