Wall clock time and date at job start Mon Mar 30 2020 01:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35914 * 117.00301 * 2 1 4 4 C 1.38857 * 119.97778 * 0.02562 * 3 2 1 5 5 C 1.38260 * 120.24831 * 180.02562 * 4 3 2 6 6 C 1.37988 * 120.21176 * 359.74076 * 5 4 3 7 7 C 1.39618 * 119.95862 * 0.49314 * 6 5 4 8 8 C 1.47739 * 120.12278 * 179.78827 * 7 6 5 9 9 O 1.21473 * 120.00102 * 184.76590 * 8 7 6 10 10 O 1.34707 * 120.00034 * 4.76179 * 8 7 6 11 11 C 1.45203 * 117.00193 * 185.03583 * 10 8 7 12 12 C 1.52997 * 109.47112 * 184.94089 * 11 10 8 13 13 C 1.50700 * 115.55079 * 54.24550 * 12 11 10 14 14 H 1.08000 * 119.99870 * 215.59439 * 13 12 11 15 15 C 1.37884 * 120.00294 * 35.30773 * 13 12 11 16 16 N 1.31516 * 119.99485 * 355.75459 * 15 13 12 17 17 Si 1.86796 * 120.00312 * 175.74302 * 15 13 12 18 18 H 1.48503 * 109.46901 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.46867 * 120.00379 * 17 15 13 20 20 H 1.48494 * 109.47200 * 240.00854 * 17 15 13 21 21 C 1.53005 * 117.49866 * 199.90931 * 12 11 10 22 22 C 1.52995 * 117.50108 * 268.57212 * 12 11 10 23 23 C 1.38439 * 119.98394 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.47166 * 60.00152 * 1 2 3 25 25 H 1.09001 * 109.47272 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47217 * 300.00193 * 1 2 3 27 27 H 1.08006 * 119.87916 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.89377 * 180.02562 * 5 4 3 29 29 H 1.07997 * 120.02098 * 180.25092 * 6 5 4 30 30 H 1.08999 * 109.46757 * 64.94101 * 11 10 8 31 31 H 1.09004 * 109.46674 * 304.94109 * 11 10 8 32 32 H 0.97001 * 119.99808 * 184.99947 * 16 15 13 33 33 H 1.09000 * 117.49860 * 215.00690 * 21 12 11 34 34 H 1.09001 * 117.49806 * 0.02922 * 21 12 11 35 35 H 1.08999 * 117.49783 * 359.97438 * 22 12 11 36 36 H 1.09003 * 117.50164 * 144.97522 * 22 12 11 37 37 H 1.07993 * 120.10758 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2894 2.3753 0.0005 5 6 1.9113 3.6101 0.0000 6 6 3.2887 3.6938 0.0043 7 6 4.0580 2.5288 -0.0011 8 6 5.5329 2.6142 -0.0013 9 8 6.1999 1.6032 -0.0934 10 8 6.1381 3.8134 0.1007 11 6 7.5851 3.8339 -0.0189 12 6 8.0986 5.2509 0.2443 13 6 7.6634 5.8680 1.5485 14 1 7.4543 6.9263 1.6019 15 6 7.5266 5.0807 2.6722 16 7 7.6943 3.7791 2.5873 17 14 7.1033 5.8629 4.3148 18 1 6.9678 7.3317 4.1434 19 1 5.8218 5.3029 4.8140 20 1 8.1833 5.5758 5.2927 21 6 9.4944 5.6040 -0.2734 22 6 8.2541 6.1811 -0.9603 23 6 3.4286 1.2830 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.2110 2.3161 0.0005 28 1 1.3172 4.5120 0.0008 29 1 3.7712 4.6600 0.0080 30 1 7.8708 3.5248 -1.0243 31 1 8.0195 3.1488 0.7092 32 1 7.5274 3.2172 3.3602 33 1 10.0979 6.2828 0.3293 34 1 10.0466 4.8270 -0.8019 35 1 7.9909 5.7835 -1.9405 36 1 8.0412 7.2395 -0.8097 37 1 4.0181 0.3782 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076090675.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:38 Heat of formation + Delta-G solvation = -65.510582 kcal Electronic energy + Delta-G solvation = -21046.804041 eV Core-core repulsion = 17755.937764 eV Total energy + Delta-G solvation = -3290.866277 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.24035 -39.19750 -37.25404 -36.53752 -34.90430 -32.16422 -31.20296 -30.32206 -27.40559 -26.58354 -25.40570 -23.52033 -22.30950 -21.26091 -20.22723 -19.14520 -18.19527 -16.73394 -16.37374 -16.06944 -15.85311 -15.57484 -15.27371 -15.18545 -14.54581 -13.90999 -13.66281 -13.51678 -13.09347 -12.67678 -12.46233 -11.97238 -11.81602 -11.71562 -11.51650 -11.13092 -11.02551 -10.91599 -10.73535 -10.49102 -10.33173 -9.94427 -9.54504 -9.27786 -8.97180 -8.95771 -8.75644 -8.24091 -8.21985 -5.96784 -4.10725 0.92996 1.48665 3.04732 3.14450 3.26976 3.35713 3.38838 3.71547 4.05717 4.36957 4.72613 4.84753 4.96431 4.97527 4.99412 5.23960 5.29550 5.41717 5.46924 5.50990 5.76414 5.95813 6.06120 6.21700 6.24204 6.42973 6.50660 6.53905 6.64161 6.65369 6.71321 6.83386 6.99211 7.24368 7.32380 7.48835 7.62912 7.93632 8.33711 8.71110 8.88337 9.51620 10.97744 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.004998 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.847589 B = 5601.326269 C = 6148.028502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.109 3.891 4 C -0.185 4.185 5 C -0.096 4.096 6 C -0.096 4.096 7 C -0.070 4.070 8 C 0.501 3.499 9 O -0.517 6.517 10 O -0.313 6.313 11 C 0.118 3.882 12 C 0.046 3.954 13 C -0.480 4.480 14 H 0.063 0.937 15 C 0.073 3.927 16 N -0.882 5.882 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.196 4.196 22 C -0.209 4.209 23 C -0.093 4.093 24 H 0.054 0.946 25 H 0.098 0.902 26 H 0.055 0.945 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.146 0.854 30 H 0.021 0.979 31 H 0.120 0.880 32 H 0.262 0.738 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.578 -3.334 -5.198 14.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.064 3.936 4 C -0.204 4.204 5 C -0.114 4.114 6 C -0.114 4.114 7 C -0.071 4.071 8 C 0.345 3.655 9 O -0.409 6.409 10 O -0.227 6.227 11 C 0.046 3.954 12 C 0.045 3.955 13 C -0.518 4.518 14 H 0.081 0.919 15 C -0.130 4.130 16 N -0.519 5.519 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.234 4.234 22 C -0.246 4.246 23 C -0.112 4.112 24 H 0.073 0.927 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.164 0.836 30 H 0.039 0.961 31 H 0.138 0.862 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.196 -3.941 -5.064 14.673 hybrid contribution -0.380 0.431 0.860 1.035 sum -13.576 -3.510 -4.203 14.639 Atomic orbital electron populations 1.23038 0.78579 1.03830 1.01261 1.86084 1.21165 1.26681 1.89124 1.18724 0.91824 0.84318 0.98688 1.21401 0.99993 0.92431 1.06555 1.20931 0.94447 0.97071 0.98949 1.21553 0.93493 0.98943 0.97402 1.19121 0.90980 0.93476 1.03530 1.20834 0.88189 0.82902 0.73589 1.90748 1.66441 1.37164 1.46550 1.86476 1.25874 1.29887 1.80447 1.22891 0.74598 0.99821 0.98137 1.18936 0.93527 0.90484 0.92548 1.20482 1.45467 0.94586 0.91222 0.91925 1.24966 0.94175 0.94807 0.99028 1.69769 1.48340 1.03486 1.30353 0.86450 0.77992 0.79497 0.83593 1.19681 1.20932 1.20913 1.22990 0.92195 1.03283 1.04907 1.22951 1.04792 0.99585 0.97286 1.20435 0.91356 0.98131 1.01295 0.92713 0.88324 0.92686 0.85300 0.85065 0.83642 0.96130 0.86200 0.92730 0.89807 0.91414 0.91269 0.90332 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -4.09 10.49 -19.47 -0.20 -4.29 16 3 C 0.11 1.56 6.68 -39.28 -0.26 1.30 16 4 C -0.19 -2.25 9.03 -39.34 -0.36 -2.60 16 5 C -0.10 -1.23 10.03 -39.66 -0.40 -1.62 16 6 C -0.10 -1.54 9.61 -39.16 -0.38 -1.92 16 7 C -0.07 -1.30 5.87 -105.00 -0.62 -1.92 16 8 C 0.50 11.33 7.88 34.61 0.27 11.60 16 9 O -0.52 -12.72 16.05 -19.25 -0.31 -13.03 16 10 O -0.31 -7.60 8.99 -40.51 -0.36 -7.96 16 11 C 0.12 2.96 4.45 37.16 0.17 3.13 16 12 C 0.05 1.13 2.21 -155.66 -0.34 0.79 16 13 C -0.48 -12.92 8.79 -34.44 -0.30 -13.22 16 14 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 15 C 0.07 1.96 5.35 -17.82 -0.10 1.87 16 16 N -0.88 -24.64 10.16 55.43 0.56 -24.08 16 17 Si 0.90 21.01 29.54 -169.99 -5.02 15.98 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.20 -4.33 9.96 -26.69 -0.27 -4.60 16 22 C -0.21 -4.49 9.92 -26.69 -0.26 -4.76 16 23 C -0.09 -1.58 9.53 -39.01 -0.37 -1.95 16 24 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 25 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 27 H 0.13 1.14 6.28 -52.48 -0.33 0.81 16 28 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.15 2.38 7.62 -52.49 -0.40 1.98 16 30 H 0.02 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.12 3.33 5.76 -51.93 -0.30 3.03 16 32 H 0.26 7.12 8.32 -40.82 -0.34 6.79 16 33 H 0.08 1.83 8.14 -51.93 -0.42 1.40 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.14 2.47 7.66 -52.49 -0.40 2.07 16 LS Contribution 321.30 15.07 4.84 4.84 Total: -1.00 -30.59 321.30 -7.44 -38.03 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.73 Total: 3.18 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -2.22 Total: -12.68 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.56 Total: -24.08 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.88 Total: -25.28 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.59 -7.44 -38.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076090675.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.478 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds