Wall clock time and date at job start Mon Mar 30 2020 01:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35914 * 117.00301 * 2 1 4 4 C 1.38857 * 119.97778 * 0.02562 * 3 2 1 5 5 C 1.38260 * 120.24831 * 180.02562 * 4 3 2 6 6 C 1.37988 * 120.21176 * 359.74076 * 5 4 3 7 7 C 1.39618 * 119.95862 * 0.49314 * 6 5 4 8 8 C 1.47739 * 120.12278 * 179.78827 * 7 6 5 9 9 O 1.21473 * 120.00102 * 184.76590 * 8 7 6 10 10 O 1.34707 * 120.00034 * 4.76179 * 8 7 6 11 11 C 1.45203 * 117.00193 * 185.03583 * 10 8 7 12 12 C 1.52997 * 109.47112 * 184.94089 * 11 10 8 13 13 C 1.50700 * 115.55079 * 54.24550 * 12 11 10 14 14 H 1.08000 * 119.99870 * 215.59439 * 13 12 11 15 15 C 1.37884 * 120.00294 * 35.30773 * 13 12 11 16 16 N 1.31516 * 119.99485 * 355.75459 * 15 13 12 17 17 Si 1.86796 * 120.00312 * 175.74302 * 15 13 12 18 18 H 1.48503 * 109.46901 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.46867 * 120.00379 * 17 15 13 20 20 H 1.48494 * 109.47200 * 240.00854 * 17 15 13 21 21 C 1.53005 * 117.49866 * 199.90931 * 12 11 10 22 22 C 1.52995 * 117.50108 * 268.57212 * 12 11 10 23 23 C 1.38439 * 119.98394 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.47166 * 60.00152 * 1 2 3 25 25 H 1.09001 * 109.47272 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47217 * 300.00193 * 1 2 3 27 27 H 1.08006 * 119.87916 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.89377 * 180.02562 * 5 4 3 29 29 H 1.07997 * 120.02098 * 180.25092 * 6 5 4 30 30 H 1.08999 * 109.46757 * 64.94101 * 11 10 8 31 31 H 1.09004 * 109.46674 * 304.94109 * 11 10 8 32 32 H 0.97001 * 119.99808 * 184.99947 * 16 15 13 33 33 H 1.09000 * 117.49860 * 215.00690 * 21 12 11 34 34 H 1.09001 * 117.49806 * 0.02922 * 21 12 11 35 35 H 1.08999 * 117.49783 * 359.97438 * 22 12 11 36 36 H 1.09003 * 117.50164 * 144.97522 * 22 12 11 37 37 H 1.07993 * 120.10758 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2894 2.3753 0.0005 5 6 1.9113 3.6101 0.0000 6 6 3.2887 3.6938 0.0043 7 6 4.0580 2.5288 -0.0011 8 6 5.5329 2.6142 -0.0013 9 8 6.1999 1.6032 -0.0934 10 8 6.1381 3.8134 0.1007 11 6 7.5851 3.8339 -0.0189 12 6 8.0986 5.2509 0.2443 13 6 7.6634 5.8680 1.5485 14 1 7.4543 6.9263 1.6019 15 6 7.5266 5.0807 2.6722 16 7 7.6943 3.7791 2.5873 17 14 7.1033 5.8629 4.3148 18 1 6.9678 7.3317 4.1434 19 1 5.8218 5.3029 4.8140 20 1 8.1833 5.5758 5.2927 21 6 9.4944 5.6040 -0.2734 22 6 8.2541 6.1811 -0.9603 23 6 3.4286 1.2830 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.2110 2.3161 0.0005 28 1 1.3172 4.5120 0.0008 29 1 3.7712 4.6600 0.0080 30 1 7.8708 3.5248 -1.0243 31 1 8.0195 3.1488 0.7092 32 1 7.5274 3.2172 3.3602 33 1 10.0979 6.2828 0.3293 34 1 10.0466 4.8270 -0.8019 35 1 7.9909 5.7835 -1.9405 36 1 8.0412 7.2395 -0.8097 37 1 4.0181 0.3782 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076090675.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:37 Heat of formation + Delta-G solvation = -82.181012 kcal Electronic energy + Delta-G solvation = -21047.526925 eV Core-core repulsion = 17755.937764 eV Total energy + Delta-G solvation = -3291.589161 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.54259 -40.69007 -38.69756 -38.06557 -36.74957 -34.19118 -32.40444 -31.44843 -28.43640 -28.13628 -27.42626 -24.93872 -23.44019 -23.00608 -21.66065 -21.08621 -19.49472 -18.57130 -17.92374 -17.22349 -17.18519 -16.79927 -16.71235 -16.66808 -16.43771 -15.58494 -14.90178 -14.84864 -14.52396 -14.04009 -13.86446 -13.53643 -13.42181 -13.09515 -12.92189 -12.78546 -12.69384 -12.31101 -12.12428 -12.03432 -11.98280 -11.74806 -11.39515 -11.18895 -10.90254 -10.68862 -10.18581 -10.14763 -9.32318 -7.99076 -6.19688 -0.35338 0.34567 1.40570 1.43401 1.54449 1.61427 1.79567 2.41300 2.44450 2.74442 3.04425 3.54917 3.73826 3.78492 4.02561 4.16005 4.24001 4.26329 4.36055 4.44886 4.45179 4.48010 4.62521 4.75318 4.79143 4.83263 4.92234 4.99202 5.14083 5.19669 5.32394 5.34035 5.46017 5.52677 5.59550 5.79250 5.86506 6.32800 6.36968 6.77823 6.96200 7.44677 8.92596 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.004998 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.847589 B = 5601.326269 C = 6148.028502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.336 6.336 3 C 0.113 3.887 4 C -0.163 4.163 5 C -0.081 4.081 6 C -0.106 4.106 7 C -0.099 4.099 8 C 0.495 3.505 9 O -0.552 6.552 10 O -0.322 6.322 11 C 0.126 3.874 12 C 0.004 3.996 13 C -0.493 4.493 14 H 0.060 0.940 15 C 0.027 3.973 16 N -0.907 5.907 17 Si 0.955 3.045 18 H -0.262 1.262 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.187 4.187 22 C -0.185 4.185 23 C -0.115 4.115 24 H 0.073 0.927 25 H 0.118 0.882 26 H 0.070 0.930 27 H 0.175 0.825 28 H 0.173 0.827 29 H 0.137 0.863 30 H 0.027 0.973 31 H 0.087 0.913 32 H 0.256 0.744 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.582 -2.119 -5.488 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.250 6.250 3 C 0.068 3.932 4 C -0.182 4.182 5 C -0.099 4.099 6 C -0.124 4.124 7 C -0.100 4.100 8 C 0.341 3.659 9 O -0.446 6.446 10 O -0.236 6.236 11 C 0.052 3.948 12 C 0.004 3.996 13 C -0.530 4.530 14 H 0.078 0.922 15 C -0.173 4.173 16 N -0.546 5.546 17 Si 0.781 3.219 18 H -0.186 1.186 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.225 4.225 22 C -0.222 4.222 23 C -0.134 4.134 24 H 0.092 0.908 25 H 0.137 0.863 26 H 0.089 0.911 27 H 0.192 0.808 28 H 0.191 0.809 29 H 0.155 0.845 30 H 0.046 0.954 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.211 -2.710 -5.365 17.290 hybrid contribution 0.423 -0.009 0.894 0.989 sum -15.788 -2.720 -4.471 16.632 Atomic orbital electron populations 1.23455 0.75693 1.05913 1.02865 1.86079 1.24105 1.26087 1.88757 1.18739 0.90878 0.85882 0.97711 1.21883 1.02050 0.90962 1.03278 1.21353 0.92914 0.99071 0.96519 1.21601 0.95167 0.97478 0.98204 1.18971 0.88478 0.95326 1.07273 1.21666 0.90022 0.81935 0.72260 1.90702 1.67637 1.37877 1.48379 1.86473 1.25420 1.30939 1.80812 1.22646 0.75226 0.99573 0.97347 1.19066 0.95920 0.91058 0.93561 1.20728 1.45380 0.94487 0.92391 0.92212 1.25669 0.94418 0.95133 1.02042 1.69971 1.49507 1.04542 1.30597 0.85539 0.77471 0.79098 0.79777 1.18603 1.21013 1.20864 1.23007 0.91583 1.03411 1.04507 1.22972 1.03132 0.99389 0.96670 1.20349 0.93051 0.96819 1.03138 0.90800 0.86348 0.91140 0.80771 0.80933 0.84527 0.95443 0.89496 0.93420 0.89632 0.90091 0.89489 0.89407 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.29 16 2 O -0.34 -7.99 10.49 -92.58 -0.97 -8.96 16 3 C 0.11 3.04 6.68 22.47 0.15 3.19 16 4 C -0.16 -3.30 9.03 22.42 0.20 -3.09 16 5 C -0.08 -1.78 10.03 22.22 0.22 -1.56 16 6 C -0.11 -3.36 9.61 22.54 0.22 -3.14 16 7 C -0.10 -3.83 5.87 -20.11 -0.12 -3.95 16 8 C 0.49 23.74 7.88 70.33 0.55 24.30 16 9 O -0.55 -29.17 16.05 19.92 0.32 -28.85 16 10 O -0.32 -16.36 8.99 -56.17 -0.50 -16.87 16 11 C 0.13 6.53 4.45 71.98 0.32 6.85 16 12 C 0.00 0.22 2.21 -52.93 -0.12 0.10 16 13 C -0.49 -26.75 8.79 25.60 0.23 -26.53 16 14 H 0.06 3.19 7.82 -2.91 -0.02 3.17 16 15 C 0.03 1.47 5.35 84.66 0.45 1.92 16 16 N -0.91 -52.64 10.16 21.45 0.22 -52.42 16 17 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 18 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 C -0.19 -8.16 9.96 30.62 0.30 -7.85 16 22 C -0.18 -7.69 9.92 30.62 0.30 -7.39 16 23 C -0.11 -4.01 9.53 22.64 0.22 -3.79 16 24 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 25 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 27 H 0.18 1.96 6.28 -2.91 -0.02 1.94 16 28 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 29 H 0.14 4.49 7.62 -2.91 -0.02 4.47 16 30 H 0.03 1.34 8.09 -2.39 -0.02 1.32 16 31 H 0.09 5.11 5.76 -2.38 -0.01 5.10 16 32 H 0.26 14.53 8.32 -92.71 -0.77 13.76 16 33 H 0.09 3.66 8.14 -2.39 -0.02 3.64 16 34 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 35 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 36 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 37 H 0.12 4.65 7.66 -2.91 -0.02 4.62 16 Total: -1.00 -69.70 321.30 6.21 -63.49 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 1.07 Total: 17.66 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: 4.05 Total: -19.65 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 0.22 Total: -52.42 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -1.16 Total: -54.67 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -69.70 6.21 -63.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076090675.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.690 kcal (2) G-P(sol) polarization free energy of solvation -69.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds