Wall clock time and date at job start Mon Mar 30 2020 02:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86796 * 119.99981 * 2 1 4 4 H 1.48494 * 109.46983 * 239.99103 * 3 2 1 5 5 H 1.48501 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47281 * 119.99381 * 3 2 1 7 7 C 1.39936 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99896 * 162.56514 * 7 2 1 9 9 C 1.41434 * 120.00298 * 342.56097 * 7 2 1 10 10 C 1.40789 * 120.17797 * 154.97859 * 9 7 2 11 11 C 1.37709 * 120.04035 * 179.97438 * 10 9 7 12 12 C 1.38365 * 120.41536 * 0.03132 * 11 10 9 13 13 C 1.39887 * 120.35889 * 359.94751 * 12 11 10 14 14 C 1.47880 * 120.02709 * 179.74804 * 13 12 11 15 15 O 1.21548 * 119.99685 * 180.02562 * 14 13 12 16 16 N 1.34773 * 119.99953 * 0.02562 * 14 13 12 17 17 N 1.36605 * 119.99828 * 179.97438 * 16 14 13 18 18 C 1.47013 * 110.99702 * 243.63058 * 17 16 14 19 19 C 1.53098 * 109.25829 * 177.60803 * 18 17 16 20 20 O 1.43014 * 109.25630 * 56.84760 * 19 18 17 21 21 C 1.43012 * 113.74027 * 301.32921 * 20 19 18 22 22 C 1.47016 * 111.00076 * 119.99843 * 17 16 14 23 23 C 1.39037 * 119.94501 * 0.02693 * 13 12 11 24 24 H 0.96998 * 119.99675 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.97746 * 0.02562 * 10 9 7 26 26 H 1.08007 * 119.79042 * 179.97438 * 11 10 9 27 27 H 1.08000 * 119.82508 * 179.97438 * 12 11 10 28 28 H 0.96998 * 120.00506 * 359.97438 * 16 14 13 29 29 H 1.09003 * 109.50462 * 297.54053 * 18 17 16 30 30 H 1.08999 * 109.50620 * 57.67288 * 18 17 16 31 31 H 1.09002 * 109.50832 * 296.91524 * 19 18 17 32 32 H 1.09000 * 109.54235 * 176.80241 * 19 18 17 33 33 H 1.08997 * 109.50847 * 298.74065 * 21 20 19 34 34 H 1.09000 * 109.54587 * 178.62717 * 21 20 19 35 35 H 1.09006 * 109.50114 * 302.32265 * 22 17 16 36 36 H 1.08999 * 109.50630 * 62.45360 * 22 17 16 37 37 H 1.07995 * 120.19991 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0962 1.6962 -1.2124 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6965 1.2126 7 6 2.0079 -1.2119 0.0005 8 1 3.0508 -1.2336 -0.2797 9 6 1.3495 -2.4085 0.3681 10 6 1.8196 -3.6487 -0.1040 11 6 1.1767 -4.8121 0.2561 12 6 0.0669 -4.7724 1.0815 13 6 -0.4144 -3.5495 1.5608 14 6 -1.6045 -3.5152 2.4380 15 8 -2.0225 -2.4523 2.8537 16 7 -2.2255 -4.6625 2.7764 17 7 -3.3245 -4.6308 3.5871 18 6 -3.0638 -5.3275 4.8552 19 6 -4.2975 -5.2166 5.7551 20 8 -5.4323 -5.7502 5.0675 21 6 -5.7154 -5.0946 3.8284 22 6 -4.4961 -5.2042 2.9090 23 6 0.2235 -2.3659 1.2070 24 1 -0.4849 0.8401 -0.0004 25 1 2.6855 -3.6878 -0.7484 26 1 1.5405 -5.7613 -0.1088 27 1 -0.4302 -5.6906 1.3576 28 1 -1.8921 -5.5107 2.4443 29 1 -2.8515 -6.3780 4.6564 30 1 -2.2084 -4.8703 5.3525 31 1 -4.4782 -4.1694 5.9976 32 1 -4.1306 -5.7795 6.6735 33 1 -5.9372 -4.0438 4.0149 34 1 -6.5737 -5.5689 3.3526 35 1 -4.6861 -4.6570 1.9856 36 1 -4.3067 -6.2527 2.6792 37 1 -0.1448 -1.4195 1.5744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077924649.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:06 Heat of formation + Delta-G solvation = -24.438694 kcal Electronic energy + Delta-G solvation = -20979.806634 eV Core-core repulsion = 17723.014119 eV Total energy + Delta-G solvation = -3256.792515 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.12079 -38.68496 -37.10810 -35.81002 -33.77918 -31.81696 -31.36418 -29.94884 -29.45870 -26.35282 -25.22568 -24.16210 -22.46140 -21.11119 -20.71217 -19.63360 -18.01212 -17.51944 -16.34105 -16.00273 -15.45252 -15.40293 -15.17824 -14.98852 -14.72828 -13.98077 -13.88488 -13.60954 -13.19810 -12.75668 -12.58819 -12.52814 -11.78071 -11.66730 -11.57041 -11.18859 -11.11102 -10.94770 -10.77788 -10.53534 -10.07438 -9.98163 -9.73780 -9.23560 -9.05715 -8.89144 -8.72468 -7.68229 -7.55950 -6.82451 -4.44635 2.17775 2.79287 2.88770 3.06615 3.08307 3.14773 3.67101 3.85268 3.90751 4.39644 4.60609 4.69860 4.95210 4.99414 5.03137 5.10878 5.40546 5.48148 5.56771 5.61950 5.62886 5.74275 5.78146 6.02986 6.22258 6.63078 6.66937 6.93036 6.93596 6.96839 7.17395 7.33718 7.60090 7.64097 7.69643 7.88366 8.02205 8.15753 8.46791 8.77391 8.79824 9.10745 10.12403 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.026513 B = 0.004187 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.820542 B = 6685.097167 C = 7353.891280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.100 3.900 10 C -0.211 4.211 11 C -0.096 4.096 12 C -0.221 4.221 13 C -0.123 4.123 14 C 0.580 3.420 15 O -0.519 6.519 16 N -0.589 5.589 17 N -0.291 5.291 18 C -0.001 4.001 19 C 0.068 3.932 20 O -0.387 6.387 21 C 0.068 3.932 22 C 0.000 4.000 23 C -0.091 4.091 24 H 0.286 0.714 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.381 0.619 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.047 0.953 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.678 -8.771 6.100 12.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.100 0.900 9 C 0.098 3.902 10 C -0.231 4.231 11 C -0.115 4.115 12 C -0.241 4.241 13 C -0.127 4.127 14 C 0.371 3.629 15 O -0.393 6.393 16 N -0.337 5.337 17 N -0.108 5.108 18 C -0.129 4.129 19 C -0.010 4.010 20 O -0.305 6.305 21 C -0.010 4.010 22 C -0.129 4.129 23 C -0.111 4.111 24 H 0.097 0.903 25 H 0.114 0.886 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.221 0.779 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.066 0.934 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.387 -7.466 6.544 12.375 hybrid contribution 0.768 -0.509 -0.554 1.075 sum -6.619 -7.974 5.991 11.970 Atomic orbital electron populations 1.69776 1.07591 1.29989 1.33320 1.25969 0.94781 1.01573 0.92271 0.86310 0.80106 0.80041 0.79995 1.18955 1.20182 1.18681 1.19571 0.98089 0.91015 1.40204 0.90040 1.17585 0.91117 0.92474 0.89052 1.21108 1.03528 0.92775 1.05716 1.20427 0.95980 0.96763 0.98282 1.20319 1.01562 0.94496 1.07720 1.19389 0.96174 0.95435 1.01738 1.18782 0.82627 0.82132 0.79397 1.90688 1.65523 1.29451 1.53622 1.45505 1.27259 1.09911 1.50979 1.62961 0.95596 1.52948 0.99292 1.23352 1.00301 0.97608 0.91644 1.22664 0.83926 1.00023 0.94369 1.87957 1.48013 1.59767 1.34810 1.22662 0.95930 0.98514 0.83868 1.23345 0.91388 0.98851 0.99297 1.21622 0.96456 0.96317 0.96702 0.90294 0.88550 0.88891 0.89485 0.77942 0.93481 0.88874 0.91678 0.88010 0.91660 0.87978 0.88783 0.93447 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.60 10.97 55.55 0.61 -19.99 16 2 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 18.62 29.59 -169.99 -5.03 13.59 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.46 -11.96 9.05 -37.73 -0.34 -12.30 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 9 C 0.10 2.62 5.57 -106.87 -0.59 2.03 16 10 C -0.21 -4.95 9.78 -38.81 -0.38 -5.33 16 11 C -0.10 -2.02 10.01 -39.73 -0.40 -2.42 16 12 C -0.22 -4.58 9.55 -38.92 -0.37 -4.95 16 13 C -0.12 -2.87 5.87 -105.04 -0.62 -3.49 16 14 C 0.58 12.87 7.88 -12.32 -0.10 12.77 16 15 O -0.52 -13.36 16.66 5.32 0.09 -13.27 16 16 N -0.59 -10.22 4.72 30.54 0.14 -10.07 16 17 N -0.29 -4.55 4.58 -113.49 -0.52 -5.07 16 18 C 0.00 -0.01 6.05 -3.71 -0.02 -0.03 16 19 C 0.07 0.74 7.01 37.21 0.26 1.00 16 20 O -0.39 -4.64 10.83 -35.23 -0.38 -5.03 16 21 C 0.07 0.75 7.01 37.21 0.26 1.01 16 22 C 0.00 -0.01 6.05 -3.71 -0.02 -0.03 16 23 C -0.09 -2.40 8.23 -38.44 -0.32 -2.72 16 24 H 0.29 6.94 8.30 -40.82 -0.34 6.60 16 25 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 26 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 27 H 0.09 1.49 6.38 -52.49 -0.33 1.16 16 28 H 0.38 5.73 6.85 -185.15 -1.27 4.47 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.13 3.84 5.76 -52.49 -0.30 3.54 16 LS Contribution 312.30 15.07 4.71 4.71 Total: -1.00 -30.35 312.30 -8.79 -39.14 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -5.68 Total: 8.69 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -2.73 Total: -12.70 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.23 Total: -35.14 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.29 Total: -18.29 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.35 -8.79 -39.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077924649.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.702 kcal (2) G-P(sol) polarization free energy of solvation -30.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds