Wall clock time and date at job start Mon Mar 30 2020 02:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86796 * 119.99981 * 2 1 4 4 H 1.48494 * 109.46983 * 239.99103 * 3 2 1 5 5 H 1.48501 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47281 * 119.99381 * 3 2 1 7 7 C 1.39936 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99896 * 162.56514 * 7 2 1 9 9 C 1.41434 * 120.00298 * 342.56097 * 7 2 1 10 10 C 1.40789 * 120.17797 * 154.97859 * 9 7 2 11 11 C 1.37709 * 120.04035 * 179.97438 * 10 9 7 12 12 C 1.38365 * 120.41536 * 0.03132 * 11 10 9 13 13 C 1.39887 * 120.35889 * 359.94751 * 12 11 10 14 14 C 1.47880 * 120.02709 * 179.74804 * 13 12 11 15 15 O 1.21548 * 119.99685 * 180.02562 * 14 13 12 16 16 N 1.34773 * 119.99953 * 0.02562 * 14 13 12 17 17 N 1.36605 * 119.99828 * 179.97438 * 16 14 13 18 18 C 1.47013 * 110.99702 * 243.63058 * 17 16 14 19 19 C 1.53098 * 109.25829 * 177.60803 * 18 17 16 20 20 O 1.43014 * 109.25630 * 56.84760 * 19 18 17 21 21 C 1.43012 * 113.74027 * 301.32921 * 20 19 18 22 22 C 1.47016 * 111.00076 * 119.99843 * 17 16 14 23 23 C 1.39037 * 119.94501 * 0.02693 * 13 12 11 24 24 H 0.96998 * 119.99675 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.97746 * 0.02562 * 10 9 7 26 26 H 1.08007 * 119.79042 * 179.97438 * 11 10 9 27 27 H 1.08000 * 119.82508 * 179.97438 * 12 11 10 28 28 H 0.96998 * 120.00506 * 359.97438 * 16 14 13 29 29 H 1.09003 * 109.50462 * 297.54053 * 18 17 16 30 30 H 1.08999 * 109.50620 * 57.67288 * 18 17 16 31 31 H 1.09002 * 109.50832 * 296.91524 * 19 18 17 32 32 H 1.09000 * 109.54235 * 176.80241 * 19 18 17 33 33 H 1.08997 * 109.50847 * 298.74065 * 21 20 19 34 34 H 1.09000 * 109.54587 * 178.62717 * 21 20 19 35 35 H 1.09006 * 109.50114 * 302.32265 * 22 17 16 36 36 H 1.08999 * 109.50630 * 62.45360 * 22 17 16 37 37 H 1.07995 * 120.19991 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0962 1.6962 -1.2124 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6965 1.2126 7 6 2.0079 -1.2119 0.0005 8 1 3.0508 -1.2336 -0.2797 9 6 1.3495 -2.4085 0.3681 10 6 1.8196 -3.6487 -0.1040 11 6 1.1767 -4.8121 0.2561 12 6 0.0669 -4.7724 1.0815 13 6 -0.4144 -3.5495 1.5608 14 6 -1.6045 -3.5152 2.4380 15 8 -2.0225 -2.4523 2.8537 16 7 -2.2255 -4.6625 2.7764 17 7 -3.3245 -4.6308 3.5871 18 6 -3.0638 -5.3275 4.8552 19 6 -4.2975 -5.2166 5.7551 20 8 -5.4323 -5.7502 5.0675 21 6 -5.7154 -5.0946 3.8284 22 6 -4.4961 -5.2042 2.9090 23 6 0.2235 -2.3659 1.2070 24 1 -0.4849 0.8401 -0.0004 25 1 2.6855 -3.6878 -0.7484 26 1 1.5405 -5.7613 -0.1088 27 1 -0.4302 -5.6906 1.3576 28 1 -1.8921 -5.5107 2.4443 29 1 -2.8515 -6.3780 4.6564 30 1 -2.2084 -4.8703 5.3525 31 1 -4.4782 -4.1694 5.9976 32 1 -4.1306 -5.7795 6.6735 33 1 -5.9372 -4.0438 4.0149 34 1 -6.5737 -5.5689 3.3526 35 1 -4.6861 -4.6570 1.9856 36 1 -4.3067 -6.2527 2.6792 37 1 -0.1448 -1.4195 1.5744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077924649.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:05 Heat of formation + Delta-G solvation = -44.906894 kcal Electronic energy + Delta-G solvation = -20980.694202 eV Core-core repulsion = 17723.014119 eV Total energy + Delta-G solvation = -3257.680083 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.43198 -40.10411 -38.78440 -37.20286 -35.61709 -33.30331 -32.29104 -31.62893 -31.26326 -27.69758 -26.96464 -25.11382 -24.09855 -22.83930 -21.88618 -21.29776 -19.62493 -18.94898 -17.71190 -17.31174 -17.02103 -16.55974 -16.52965 -16.32851 -16.00208 -15.53082 -15.23611 -15.20183 -14.85206 -14.50175 -14.28217 -13.53452 -13.46655 -12.97634 -12.81535 -12.75932 -12.54539 -12.45531 -12.21711 -11.92292 -11.85910 -11.53734 -11.10148 -11.07005 -10.65096 -10.39452 -9.88647 -9.51333 -9.40536 -8.66946 -6.39160 0.35726 1.00160 1.37004 1.48250 1.51144 1.55972 2.09215 2.19711 2.77989 2.81727 3.24410 3.68204 3.76172 3.86575 3.99031 4.13239 4.14517 4.17014 4.39957 4.48777 4.56361 4.62175 4.69899 4.80903 4.86262 4.90181 5.07512 5.16775 5.29993 5.49514 5.60034 5.82743 5.89674 6.02803 6.04151 6.12513 6.26033 6.45546 6.63040 6.87214 6.93152 7.52973 8.29871 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.026513 B = 0.004187 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.820542 B = 6685.097167 C = 7353.891280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.031 3.969 3 Si 0.982 3.018 4 H -0.252 1.252 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.498 4.498 8 H 0.085 0.915 9 C 0.070 3.930 10 C -0.215 4.215 11 C -0.094 4.094 12 C -0.199 4.199 13 C -0.132 4.132 14 C 0.580 3.420 15 O -0.567 6.567 16 N -0.568 5.568 17 N -0.323 5.323 18 C 0.001 3.999 19 C 0.070 3.930 20 O -0.392 6.392 21 C 0.071 3.929 22 C 0.000 4.000 23 C -0.129 4.129 24 H 0.287 0.713 25 H 0.110 0.890 26 H 0.139 0.861 27 H 0.133 0.867 28 H 0.395 0.605 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.132 0.868 33 H 0.056 0.944 34 H 0.132 0.868 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.814 -11.455 6.349 14.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.184 4.184 3 Si 0.803 3.197 4 H -0.176 1.176 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.527 4.527 8 H 0.104 0.896 9 C 0.067 3.933 10 C -0.235 4.235 11 C -0.112 4.112 12 C -0.218 4.218 13 C -0.137 4.137 14 C 0.370 3.630 15 O -0.444 6.444 16 N -0.314 5.314 17 N -0.141 5.141 18 C -0.127 4.127 19 C -0.007 4.007 20 O -0.310 6.310 21 C -0.007 4.007 22 C -0.127 4.127 23 C -0.150 4.150 24 H 0.097 0.903 25 H 0.128 0.872 26 H 0.157 0.843 27 H 0.151 0.849 28 H 0.237 0.763 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.150 0.850 33 H 0.074 0.926 34 H 0.150 0.850 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.525 -10.226 6.790 14.398 hybrid contribution 0.737 0.077 -0.586 0.945 sum -6.788 -10.149 6.204 13.695 Atomic orbital electron populations 1.69881 1.09271 1.30739 1.35200 1.26849 0.95382 1.04951 0.91266 0.85245 0.78711 0.75463 0.80309 1.17569 1.19716 1.18470 1.19865 0.98520 0.92167 1.42190 0.89643 1.17922 0.91671 0.93951 0.89733 1.21427 1.03916 0.92761 1.05405 1.20916 0.95250 0.97765 0.97246 1.20817 1.00742 0.94917 1.05362 1.19639 0.96498 0.95692 1.01848 1.18651 0.82516 0.82743 0.79073 1.90661 1.66804 1.31473 1.55483 1.45050 1.27248 1.08855 1.50201 1.62941 0.95520 1.55335 1.00280 1.23405 1.00981 0.98045 0.90284 1.22774 0.82857 1.00205 0.94902 1.87959 1.48180 1.59877 1.35020 1.22766 0.95971 0.98496 0.83481 1.23400 0.90774 0.99396 0.99160 1.21424 0.98301 0.96276 0.98967 0.90255 0.87206 0.84285 0.84908 0.76263 0.91713 0.89798 0.92579 0.84996 0.92577 0.85010 0.89843 0.91649 0.88298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.12 10.97 21.82 0.24 -45.88 16 2 C 0.03 1.60 5.14 85.25 0.44 2.04 16 3 Si 0.98 39.50 29.59 68.60 2.03 41.53 16 4 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 7 C -0.50 -26.98 9.05 23.47 0.21 -26.76 16 8 H 0.09 4.34 7.90 -2.91 -0.02 4.31 16 9 C 0.07 3.75 5.57 -21.32 -0.12 3.63 16 10 C -0.22 -9.90 9.78 22.77 0.22 -9.68 16 11 C -0.09 -3.64 10.01 22.17 0.22 -3.41 16 12 C -0.20 -7.66 9.55 22.70 0.22 -7.45 16 13 C -0.13 -6.22 5.87 -20.13 -0.12 -6.34 16 14 C 0.58 25.99 7.88 86.80 0.68 26.67 16 15 O -0.57 -30.45 16.66 -3.87 -0.06 -30.51 16 16 N -0.57 -18.83 4.72 -175.58 -0.83 -19.66 16 17 N -0.32 -9.66 4.58 -512.98 -2.35 -12.01 16 18 C 0.00 0.02 6.05 86.31 0.52 0.54 16 19 C 0.07 1.38 7.01 72.01 0.50 1.88 16 20 O -0.39 -8.32 10.83 -148.98 -1.61 -9.93 16 21 C 0.07 1.39 7.01 72.01 0.50 1.90 16 22 C 0.00 0.01 6.05 86.31 0.52 0.53 16 23 C -0.13 -7.15 8.23 23.01 0.19 -6.96 16 24 H 0.29 14.83 8.30 -92.71 -0.77 14.06 16 25 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 26 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 27 H 0.13 3.87 6.38 -2.91 -0.02 3.85 16 28 H 0.40 10.62 6.85 -215.50 -1.48 9.14 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 34 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.10 6.13 5.76 -2.91 -0.02 6.11 16 Total: -1.00 -70.23 312.30 1.03 -69.20 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: -0.38 Total: 30.67 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 4.00 Total: -23.41 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -2.94 Total: -77.55 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -1.68 Total: -40.44 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -70.23 1.03 -69.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077924649.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.295 kcal (2) G-P(sol) polarization free energy of solvation -70.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds