Wall clock time and date at job start Mon Mar 30 2020 01:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35754 * 116.99718 * 2 1 4 4 C 1.38912 * 119.90420 * 359.97438 * 3 2 1 5 5 C 1.37680 * 120.17632 * 179.69872 * 4 3 2 6 6 C 1.40001 * 119.97593 * 0.27823 * 5 4 3 7 7 C 1.46867 * 120.09797 * 179.97438 * 6 5 4 8 8 O 1.21297 * 119.99980 * 0.02562 * 7 6 5 9 9 C 1.40035 * 119.81031 * 359.97438 * 6 5 4 10 10 C 1.38034 * 119.82297 * 0.02562 * 9 6 5 11 11 O 1.35997 * 119.99145 * 180.02562 * 10 9 6 12 12 C 1.42901 * 117.00021 * 354.80627 * 11 10 9 13 13 C 1.52995 * 109.47099 * 184.06813 * 12 11 10 14 14 C 1.50696 * 115.55151 * 278.68202 * 13 12 11 15 15 H 1.08008 * 120.00418 * 94.42409 * 14 13 12 16 16 C 1.37876 * 120.00049 * 274.42466 * 14 13 12 17 17 N 1.31510 * 120.00166 * 8.50884 * 16 14 13 18 18 Si 1.86805 * 119.99952 * 188.51209 * 16 14 13 19 19 H 1.48498 * 109.47371 * 60.00048 * 18 16 14 20 20 H 1.48503 * 109.46922 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47120 * 299.99822 * 18 16 14 22 22 C 1.53005 * 117.50038 * 132.97351 * 13 12 11 23 23 C 1.53002 * 117.49907 * 64.35103 * 13 12 11 24 24 H 1.08994 * 109.47341 * 300.00422 * 1 2 3 25 25 H 1.09007 * 109.46968 * 60.00194 * 1 2 3 26 26 H 1.09004 * 109.46910 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.91288 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.01013 * 180.30059 * 5 4 3 29 29 H 1.08003 * 119.99978 * 179.97438 * 7 6 5 30 30 H 1.07997 * 120.09363 * 180.02562 * 9 6 5 31 31 H 1.09002 * 109.46922 * 304.06744 * 12 11 10 32 32 H 1.08998 * 109.46710 * 64.06654 * 12 11 10 33 33 H 0.96998 * 120.00011 * 185.00460 * 17 16 14 34 34 H 1.08995 * 117.49560 * 359.97438 * 22 13 12 35 35 H 1.08998 * 117.49969 * 145.02066 * 22 13 12 36 36 H 1.08997 * 117.50055 * 214.97733 * 23 13 12 37 37 H 1.08999 * 117.50119 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2867 2.3733 -0.0005 5 6 1.9058 3.6030 0.0057 6 6 3.3036 3.6824 0.0068 7 6 3.9669 4.9928 0.0129 8 8 3.3035 6.0083 0.0175 9 6 4.0676 2.5088 0.0020 10 6 3.4384 1.2802 -0.0043 11 8 4.1770 0.1383 -0.0084 12 6 5.5942 0.2827 -0.1213 13 6 6.2422 -1.1004 -0.2105 14 6 6.4425 -1.8103 1.1036 15 1 5.7004 -2.5106 1.4577 16 6 7.5732 -1.5660 1.8538 17 7 8.3929 -0.5964 1.5111 18 14 7.9408 -2.6123 3.3571 19 1 8.0813 -4.0332 2.9489 20 1 9.2052 -2.1506 3.9843 21 1 6.8285 -2.4851 4.3327 22 6 7.2947 -1.3185 -1.2994 23 6 5.9112 -1.9581 -1.4335 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2084 2.3133 -0.0014 28 1 1.3134 4.5061 0.0102 29 1 5.0452 5.0522 0.0141 30 1 5.1461 2.5648 0.0032 31 1 5.8309 0.8535 -1.0192 32 1 5.9767 0.8074 0.7542 33 1 9.2243 -0.4706 1.9947 34 1 7.5251 -0.4768 -1.9525 35 1 8.1323 -1.9755 -1.0654 36 1 5.8388 -3.0358 -1.2878 37 1 5.2315 -1.5372 -2.1744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088255551.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:56 Heat of formation + Delta-G solvation = -72.530011 kcal Electronic energy + Delta-G solvation = -20973.213612 eV Core-core repulsion = 17682.042949 eV Total energy + Delta-G solvation = -3291.170662 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.62152 -39.99808 -39.69469 -38.08754 -37.14185 -34.01401 -31.84213 -31.21974 -28.45213 -28.27323 -27.22708 -25.36332 -23.33173 -22.93541 -21.88825 -21.02948 -19.47155 -18.38994 -18.25385 -17.51929 -17.04795 -16.73856 -16.61776 -16.10695 -15.96491 -15.77636 -15.56040 -15.23300 -14.96648 -14.47878 -13.88631 -13.59529 -13.40011 -13.26619 -13.03572 -12.86783 -12.62928 -12.38904 -12.14460 -12.03668 -12.02577 -11.90023 -11.48064 -10.80848 -10.70776 -10.46464 -10.08749 -9.82486 -8.84374 -8.14595 -6.23964 -0.37514 0.32490 1.42623 1.43288 1.45968 1.50867 2.30702 2.31893 2.43444 2.74148 3.14904 3.35328 3.54614 3.71839 3.93552 4.07600 4.20343 4.21700 4.39306 4.41454 4.45563 4.48608 4.51412 4.65631 4.70136 4.74147 4.85753 4.99182 5.00620 5.10740 5.20969 5.29392 5.56670 5.59615 5.61671 5.75514 6.19023 6.38888 6.44359 6.71107 6.79771 7.44203 8.94177 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.015962 B = 0.005176 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.734793 B = 5407.835893 C = 6093.795731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.329 6.329 3 C 0.119 3.881 4 C -0.183 4.183 5 C -0.061 4.061 6 C -0.203 4.203 7 C 0.399 3.601 8 O -0.499 6.499 9 C -0.126 4.126 10 C 0.063 3.937 11 O -0.316 6.316 12 C 0.119 3.881 13 C 0.007 3.993 14 C -0.511 4.511 15 H 0.044 0.956 16 C 0.033 3.967 17 N -0.901 5.901 18 Si 0.944 3.056 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.277 1.277 22 C -0.142 4.142 23 C -0.183 4.183 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.114 0.886 27 H 0.171 0.829 28 H 0.150 0.850 29 H 0.141 0.859 30 H 0.149 0.851 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.263 0.737 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.208 6.542 -4.289 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.242 6.242 3 C 0.072 3.928 4 C -0.202 4.202 5 C -0.080 4.080 6 C -0.205 4.205 7 C 0.260 3.740 8 O -0.376 6.376 9 C -0.145 4.145 10 C 0.017 3.983 11 O -0.230 6.230 12 C 0.044 3.956 13 C 0.007 3.993 14 C -0.548 4.548 15 H 0.062 0.938 16 C -0.169 4.169 17 N -0.538 5.538 18 Si 0.770 3.230 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.203 1.203 22 C -0.180 4.180 23 C -0.220 4.220 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.133 0.867 27 H 0.188 0.812 28 H 0.167 0.833 29 H 0.157 0.843 30 H 0.167 0.833 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.388 6.802 -4.179 14.737 hybrid contribution 0.533 -0.651 0.887 1.222 sum -11.855 6.151 -3.292 13.755 Atomic orbital electron populations 1.23453 0.76029 1.05727 1.02773 1.86182 1.23827 1.26307 1.87903 1.18924 0.89176 0.86202 0.98517 1.21283 1.01410 0.90058 1.07420 1.21308 0.93516 0.97988 0.95147 1.20783 0.94917 0.95488 1.09294 1.24337 0.96404 0.85219 0.68000 1.90490 1.70952 1.38741 1.37381 1.21450 1.01196 0.90153 1.01695 1.18768 0.89499 0.87186 1.02868 1.86244 1.20572 1.28296 1.87897 1.22376 0.75975 0.98425 0.98838 1.18871 0.98636 0.91958 0.89861 1.20610 1.05895 1.24359 1.03972 0.93792 1.25559 0.96348 0.95429 0.99518 1.70057 1.11401 1.29498 1.42884 0.85844 0.77456 0.79645 0.80105 1.19763 1.20481 1.20261 1.22508 0.91793 1.01904 1.01779 1.22881 0.98529 0.98714 1.01881 0.91096 0.90744 0.86738 0.81196 0.83276 0.84331 0.83325 0.93087 0.93507 0.92762 0.89745 0.91369 0.90469 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.81 113.37 1.11 1.37 16 2 O -0.33 -10.30 10.26 -76.78 -0.79 -11.09 16 3 C 0.12 3.72 6.71 22.73 0.15 3.88 16 4 C -0.18 -4.35 9.01 22.30 0.20 -4.15 16 5 C -0.06 -1.48 9.58 22.57 0.22 -1.27 16 6 C -0.20 -5.35 5.87 -20.16 -0.12 -5.47 16 7 C 0.40 9.20 11.44 70.08 0.80 10.00 16 8 O -0.50 -14.26 17.15 -3.08 -0.05 -14.31 16 9 C -0.13 -3.87 8.77 22.66 0.20 -3.67 16 10 C 0.06 2.29 6.69 22.52 0.15 2.44 16 11 O -0.32 -13.92 9.88 -79.49 -0.79 -14.71 16 12 C 0.12 5.28 4.64 71.98 0.33 5.62 16 13 C 0.01 0.35 1.58 -52.93 -0.08 0.27 16 14 C -0.51 -28.22 8.82 25.60 0.23 -28.00 16 15 H 0.04 2.51 7.83 -2.91 -0.02 2.49 16 16 C 0.03 1.75 5.37 84.65 0.45 2.21 16 17 N -0.90 -49.39 12.97 21.45 0.28 -49.11 16 18 Si 0.94 43.00 29.55 68.60 2.03 45.02 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 22 C -0.14 -6.40 9.42 30.60 0.29 -6.11 16 23 C -0.18 -7.93 9.92 30.60 0.30 -7.63 16 24 H 0.07 1.04 7.65 -2.39 -0.02 1.02 16 25 H 0.07 1.03 7.65 -2.38 -0.02 1.01 16 26 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.17 2.73 6.27 -2.91 -0.02 2.71 16 28 H 0.15 3.12 7.64 -2.91 -0.02 3.09 16 29 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 30 H 0.15 4.35 6.30 -2.91 -0.02 4.33 16 31 H 0.05 2.02 7.45 -2.39 -0.02 2.00 16 32 H 0.05 2.25 7.65 -2.39 -0.02 2.23 16 33 H 0.26 13.77 8.32 -92.71 -0.77 13.00 16 34 H 0.08 3.40 8.07 -2.39 -0.02 3.38 16 35 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 36 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 37 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -66.57 324.23 5.99 -60.58 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 1.08 Total: 14.14 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: 4.24 Total: -30.52 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.28 Total: -49.11 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -1.63 Total: -40.11 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -66.57 5.99 -60.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255551.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.950 kcal (2) G-P(sol) polarization free energy of solvation -66.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds