Wall clock time and date at job start Mon Mar 30 2020 02:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00075 * 2 1 4 4 H 1.48498 * 109.47300 * 269.99966 * 3 2 1 5 5 H 1.48501 * 109.46857 * 30.00213 * 3 2 1 6 6 H 1.48501 * 109.47153 * 149.99836 * 3 2 1 7 7 C 1.37878 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00113 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99794 * 180.02562 * 7 2 1 10 10 N 1.46507 * 109.47429 * 179.97438 * 9 7 2 11 11 C 1.46498 * 119.99251 * 351.14829 * 10 9 7 12 12 C 1.53000 * 109.47096 * 276.41255 * 11 10 9 13 13 C 1.53007 * 117.50019 * 243.09005 * 12 11 10 14 14 C 1.53003 * 117.49658 * 174.43391 * 12 11 10 15 15 C 1.34768 * 120.00420 * 171.15041 * 10 9 7 16 16 O 1.21537 * 120.00244 * 179.55194 * 15 10 9 17 17 C 1.47970 * 119.99958 * 359.54662 * 15 10 9 18 18 C 1.39424 * 119.74225 * 124.83875 * 17 15 10 19 19 C 1.38464 * 119.06383 * 180.02562 * 18 17 15 20 20 C 1.38726 * 118.53586 * 359.95215 * 19 18 17 21 21 C 1.38394 * 119.39205 * 0.02562 * 20 19 18 22 22 N 1.31729 * 120.90572 * 359.97438 * 21 20 19 23 23 O 1.41595 * 119.21073 * 179.97438 * 22 21 20 24 24 H 0.96996 * 120.00011 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47653 * 59.99888 * 9 7 2 26 26 H 1.09002 * 109.47387 * 299.99425 * 9 7 2 27 27 H 1.09000 * 109.47818 * 36.41583 * 11 10 9 28 28 H 1.09010 * 109.47108 * 156.41553 * 11 10 9 29 29 H 1.09000 * 115.55315 * 28.76280 * 12 11 10 30 30 H 1.09002 * 117.49827 * 0.02562 * 13 12 11 31 31 H 1.08997 * 117.50064 * 145.02236 * 13 12 11 32 32 H 1.09001 * 117.49765 * 214.98395 * 14 12 11 33 33 H 1.08998 * 117.50463 * 359.97438 * 14 12 11 34 34 H 1.07993 * 120.46811 * 359.97339 * 18 17 15 35 35 H 1.08009 * 120.73017 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.29944 * 180.30220 * 20 19 18 37 37 H 1.08010 * 119.54874 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0000 -2.5753 -0.0001 11 6 3.0621 -3.6838 0.1946 12 6 2.8214 -3.8914 1.6912 13 6 3.2543 -5.2278 2.2976 14 6 1.7674 -4.9220 2.1009 15 6 5.3119 -2.8262 -0.1792 16 8 5.7183 -3.9716 -0.1711 17 6 6.2577 -1.7071 -0.3857 18 6 7.3671 -1.5762 0.4486 19 6 8.2427 -0.5234 0.2430 20 6 7.9813 0.3639 -0.7908 21 6 6.8614 0.1744 -1.5816 22 7 6.0435 -0.8353 -1.3655 23 8 4.9079 -0.9948 -2.1962 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6808 0.8905 26 1 3.8753 -0.6797 -0.8895 27 1 2.1172 -3.4509 -0.2965 28 1 3.4806 -4.5937 -0.2358 29 1 2.9225 -3.0009 2.3116 30 1 3.7109 -5.9589 1.6304 31 1 3.6397 -5.2166 3.3171 32 1 1.1752 -4.7096 2.9910 33 1 1.2450 -5.4517 1.3043 34 1 7.5406 -2.2853 1.2444 35 1 9.1104 -0.3961 0.8735 36 1 8.6480 1.1923 -0.9797 37 1 6.6556 0.8635 -2.3875 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103437809.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:52 Heat of formation + Delta-G solvation = 84.616168 kcal Electronic energy + Delta-G solvation = -21961.018593 eV Core-core repulsion = 18708.955051 eV Total energy + Delta-G solvation = -3252.063542 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.43950 -38.96185 -36.82408 -35.12678 -34.33770 -32.31715 -31.97924 -29.83973 -27.98904 -27.23840 -24.50286 -24.16946 -22.19105 -21.88555 -20.64902 -19.33822 -17.75315 -17.55915 -16.93754 -16.36691 -15.83841 -15.34879 -15.09001 -14.88028 -14.70894 -14.25017 -14.06053 -13.54579 -13.28398 -12.64602 -12.36719 -12.13171 -12.05459 -11.57246 -11.22421 -11.10771 -10.97440 -10.86809 -10.66051 -10.05362 -9.96645 -9.74302 -9.60723 -9.40917 -9.11766 -8.94746 -8.65989 -8.19634 -7.49198 -6.05882 -4.02123 0.34148 0.57009 2.35892 2.90818 3.28540 3.29101 3.34324 3.37541 3.56796 4.33043 4.36127 4.42440 4.43593 4.47174 4.60322 4.76795 5.24125 5.27326 5.29840 5.45503 5.50796 5.57147 5.61806 5.72924 5.98420 6.06759 6.27944 6.34876 6.50205 6.56193 6.70548 6.74463 6.89062 7.03525 7.08817 7.54872 7.71451 8.02955 8.59195 8.61463 8.96359 9.53808 11.05728 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.012234 B = 0.009596 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.220975 B = 2917.063515 C = 4665.416932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.077 3.923 3 Si 0.874 3.126 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.526 4.526 8 H 0.093 0.907 9 C 0.151 3.849 10 N -0.539 5.539 11 C 0.142 3.858 12 C -0.145 4.145 13 C -0.186 4.186 14 C -0.174 4.174 15 C 0.559 3.441 16 O -0.552 6.552 17 C 0.076 3.924 18 C -0.081 4.081 19 C -0.088 4.088 20 C -0.116 4.116 21 C 0.066 3.934 22 N -0.107 5.107 23 O -0.484 6.484 24 H 0.264 0.736 25 H 0.001 0.999 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.165 0.835 35 H 0.157 0.843 36 H 0.164 0.836 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.893 0.002 3.596 17.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.125 4.125 3 Si 0.701 3.299 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.110 0.890 9 C 0.031 3.969 10 N -0.265 5.265 11 C 0.020 3.980 12 C -0.164 4.164 13 C -0.223 4.223 14 C -0.211 4.211 15 C 0.343 3.657 16 O -0.432 6.432 17 C -0.052 4.052 18 C -0.100 4.100 19 C -0.113 4.113 20 C -0.134 4.134 21 C -0.080 4.080 22 N 0.214 4.786 23 O -0.542 6.542 24 H 0.074 0.926 25 H 0.019 0.981 26 H 0.123 0.877 27 H 0.126 0.874 28 H 0.090 0.910 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.183 0.817 35 H 0.174 0.826 36 H 0.182 0.818 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 16.527 -0.519 3.353 16.871 hybrid contribution 0.168 1.210 0.012 1.222 sum 16.694 0.691 3.365 17.044 Atomic orbital electron populations 1.69876 1.05997 1.26887 1.50748 1.24745 0.94678 0.98627 0.94497 0.86877 0.79997 0.84161 0.78839 1.19642 1.21295 1.19734 1.21266 0.88356 0.95417 1.51372 0.88961 1.21175 0.97847 0.78151 0.99714 1.47797 1.04517 1.10180 1.63963 1.21148 0.94980 0.88557 0.93307 1.22601 1.03061 0.93269 0.97479 1.23031 0.97562 1.00218 1.01511 1.22853 0.91577 1.03620 1.03075 1.17365 0.82742 0.86429 0.79214 1.90748 1.77759 1.20166 1.54566 1.21432 0.98302 0.93755 0.91706 1.21792 0.91215 0.98632 0.98391 1.21730 0.99401 0.93091 0.97097 1.21917 0.96421 1.00577 0.94512 1.22731 0.90888 0.92468 1.01880 1.43430 1.14061 1.08039 1.13042 1.97526 1.13822 1.92971 1.49870 0.92600 0.98138 0.87707 0.87449 0.91019 0.87514 0.89020 0.89712 0.89128 0.88968 0.81706 0.82577 0.81831 0.79772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 3 Si 0.87 22.00 27.47 -169.99 -4.67 17.33 16 4 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 7 C -0.53 -15.03 9.12 -34.44 -0.31 -15.35 16 8 H 0.09 2.74 5.20 -52.49 -0.27 2.46 16 9 C 0.15 3.85 3.89 -5.19 -0.02 3.83 16 10 N -0.54 -12.51 2.77 -176.12 -0.49 -13.00 16 11 C 0.14 3.07 5.07 -4.04 -0.02 3.05 16 12 C -0.14 -2.79 5.87 -90.61 -0.53 -3.32 16 13 C -0.19 -2.99 10.18 -26.69 -0.27 -3.26 16 14 C -0.17 -2.85 10.25 -26.69 -0.27 -3.13 16 15 C 0.56 12.04 6.69 -12.28 -0.08 11.96 16 16 O -0.55 -12.34 16.57 5.33 0.09 -12.25 16 17 C 0.08 1.37 5.68 -82.98 -0.47 0.90 16 18 C -0.08 -0.98 9.81 -39.06 -0.38 -1.36 16 19 C -0.09 -0.70 10.16 -39.32 -0.40 -1.10 16 20 C -0.12 -0.93 10.11 -39.34 -0.40 -1.33 16 21 C 0.07 0.85 10.68 -17.54 -0.19 0.66 16 22 N -0.11 -2.00 3.11 -9.79 -0.03 -2.04 16 23 O -0.48 -12.15 15.73 -11.47 -0.18 -12.33 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.00 0.02 7.20 -51.93 -0.37 -0.35 16 26 H 0.11 2.85 3.25 -54.15 -0.18 2.67 16 27 H 0.11 2.52 5.50 -51.93 -0.29 2.24 16 28 H 0.07 1.50 6.98 -51.92 -0.36 1.14 16 29 H 0.11 2.21 8.14 -51.93 -0.42 1.79 16 30 H 0.09 1.46 8.03 -51.93 -0.42 1.04 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.16 0.59 8.06 -52.48 -0.42 0.17 16 36 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.19 1.95 8.06 -52.48 -0.42 1.52 16 LS Contribution 312.61 15.07 4.71 4.71 Total: -1.00 -37.98 312.61 -7.68 -45.66 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -4.44 Total: 4.84 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -3.45 Total: -6.30 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.25 Total: -41.67 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.09 Total: -24.58 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -37.98 -7.68 -45.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437809.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.279 kcal (2) G-P(sol) polarization free energy of solvation -37.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds