Wall clock time and date at job start Mon Mar 30 2020 02:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00075 * 2 1 4 4 H 1.48498 * 109.47300 * 269.99966 * 3 2 1 5 5 H 1.48501 * 109.46857 * 30.00213 * 3 2 1 6 6 H 1.48501 * 109.47153 * 149.99836 * 3 2 1 7 7 C 1.37878 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00113 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99794 * 180.02562 * 7 2 1 10 10 N 1.46507 * 109.47429 * 179.97438 * 9 7 2 11 11 C 1.46498 * 119.99251 * 351.14829 * 10 9 7 12 12 C 1.53000 * 109.47096 * 276.41255 * 11 10 9 13 13 C 1.53007 * 117.50019 * 243.09005 * 12 11 10 14 14 C 1.53003 * 117.49658 * 174.43391 * 12 11 10 15 15 C 1.34768 * 120.00420 * 171.15041 * 10 9 7 16 16 O 1.21537 * 120.00244 * 179.55194 * 15 10 9 17 17 C 1.47970 * 119.99958 * 359.54662 * 15 10 9 18 18 C 1.39424 * 119.74225 * 124.83875 * 17 15 10 19 19 C 1.38464 * 119.06383 * 180.02562 * 18 17 15 20 20 C 1.38726 * 118.53586 * 359.95215 * 19 18 17 21 21 C 1.38394 * 119.39205 * 0.02562 * 20 19 18 22 22 N 1.31729 * 120.90572 * 359.97438 * 21 20 19 23 23 O 1.41595 * 119.21073 * 179.97438 * 22 21 20 24 24 H 0.96996 * 120.00011 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47653 * 59.99888 * 9 7 2 26 26 H 1.09002 * 109.47387 * 299.99425 * 9 7 2 27 27 H 1.09000 * 109.47818 * 36.41583 * 11 10 9 28 28 H 1.09010 * 109.47108 * 156.41553 * 11 10 9 29 29 H 1.09000 * 115.55315 * 28.76280 * 12 11 10 30 30 H 1.09002 * 117.49827 * 0.02562 * 13 12 11 31 31 H 1.08997 * 117.50064 * 145.02236 * 13 12 11 32 32 H 1.09001 * 117.49765 * 214.98395 * 14 12 11 33 33 H 1.08998 * 117.50463 * 359.97438 * 14 12 11 34 34 H 1.07993 * 120.46811 * 359.97339 * 18 17 15 35 35 H 1.08009 * 120.73017 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.29944 * 180.30220 * 20 19 18 37 37 H 1.08010 * 119.54874 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0000 -2.5753 -0.0001 11 6 3.0621 -3.6838 0.1946 12 6 2.8214 -3.8914 1.6912 13 6 3.2543 -5.2278 2.2976 14 6 1.7674 -4.9220 2.1009 15 6 5.3119 -2.8262 -0.1792 16 8 5.7183 -3.9716 -0.1711 17 6 6.2577 -1.7071 -0.3857 18 6 7.3671 -1.5762 0.4486 19 6 8.2427 -0.5234 0.2430 20 6 7.9813 0.3639 -0.7908 21 6 6.8614 0.1744 -1.5816 22 7 6.0435 -0.8353 -1.3655 23 8 4.9079 -0.9948 -2.1962 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6808 0.8905 26 1 3.8753 -0.6797 -0.8895 27 1 2.1172 -3.4509 -0.2965 28 1 3.4806 -4.5937 -0.2358 29 1 2.9225 -3.0009 2.3116 30 1 3.7109 -5.9589 1.6304 31 1 3.6397 -5.2166 3.3171 32 1 1.1752 -4.7096 2.9910 33 1 1.2450 -5.4517 1.3043 34 1 7.5406 -2.2853 1.2444 35 1 9.1104 -0.3961 0.8735 36 1 8.6480 1.1923 -0.9797 37 1 6.6556 0.8635 -2.3875 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103437809.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:51 Heat of formation + Delta-G solvation = 56.686974 kcal Electronic energy + Delta-G solvation = -21962.229694 eV Core-core repulsion = 18708.955051 eV Total energy + Delta-G solvation = -3253.274642 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.59045 -40.52782 -38.35298 -36.68353 -35.55743 -34.45424 -33.06176 -31.20532 -30.00893 -28.83197 -25.72743 -25.13945 -24.16692 -23.23053 -22.09400 -20.86868 -19.45531 -18.76626 -18.42165 -17.67900 -17.52765 -16.58582 -16.39952 -16.30449 -15.94233 -15.79520 -15.68928 -15.19461 -14.80542 -14.28953 -14.11043 -13.45425 -13.27579 -12.98446 -12.85971 -12.80028 -12.57950 -12.37514 -12.13872 -11.88257 -11.49639 -11.46112 -11.11799 -10.88713 -10.72368 -10.66397 -10.56495 -9.90391 -9.26782 -8.30540 -6.31369 -0.65404 -0.31427 1.10342 1.24125 1.32600 1.37981 1.71907 1.96299 2.22814 2.31159 2.90248 3.03106 3.18932 3.50655 3.60412 3.69452 3.82772 3.91156 4.01466 4.10426 4.31002 4.41638 4.61127 4.74059 4.78791 4.79823 4.84842 4.86594 4.98879 5.01678 5.04027 5.24355 5.30518 5.55934 5.61030 5.73250 5.85545 6.00255 6.61776 6.67169 6.92751 7.28243 8.83806 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.012234 B = 0.009596 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.220975 B = 2917.063515 C = 4665.416932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.017 3.983 3 Si 0.939 3.061 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.252 1.252 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.168 3.832 10 N -0.556 5.556 11 C 0.147 3.853 12 C -0.174 4.174 13 C -0.157 4.157 14 C -0.166 4.166 15 C 0.553 3.447 16 O -0.571 6.571 17 C 0.033 3.967 18 C -0.076 4.076 19 C -0.047 4.047 20 C -0.079 4.079 21 C 0.056 3.944 22 N -0.135 5.135 23 O -0.578 6.578 24 H 0.267 0.733 25 H -0.001 1.001 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.185 0.815 35 H 0.222 0.778 36 H 0.228 0.772 37 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.803 1.950 5.600 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.181 4.181 3 Si 0.763 3.237 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.176 1.176 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.048 3.952 10 N -0.282 5.282 11 C 0.025 3.975 12 C -0.193 4.193 13 C -0.194 4.194 14 C -0.203 4.203 15 C 0.339 3.661 16 O -0.453 6.453 17 C -0.094 4.094 18 C -0.096 4.096 19 C -0.072 4.072 20 C -0.097 4.097 21 C -0.090 4.090 22 N 0.183 4.817 23 O -0.631 6.631 24 H 0.076 0.924 25 H 0.017 0.983 26 H 0.118 0.882 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.202 0.798 35 H 0.238 0.762 36 H 0.245 0.755 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 21.415 1.400 5.340 22.115 hybrid contribution -1.080 0.583 -0.564 1.351 sum 20.335 1.983 4.776 20.982 Atomic orbital electron populations 1.70012 1.07677 1.28025 1.52324 1.25626 0.95598 1.02607 0.94221 0.85831 0.79561 0.79435 0.78851 1.19981 1.19820 1.17613 1.21565 0.90377 0.94738 1.50610 0.91745 1.20832 0.95332 0.79720 0.99363 1.47808 1.05810 1.09374 1.65215 1.20995 0.93286 0.88219 0.95020 1.22387 1.07098 0.94269 0.95523 1.23073 0.96909 0.97085 1.02313 1.22970 0.92127 1.01734 1.03490 1.17976 0.82599 0.87755 0.77737 1.90693 1.78080 1.21449 1.55053 1.21311 0.99876 0.93946 0.94268 1.22275 0.89568 1.00392 0.97361 1.22564 0.98933 0.89628 0.96098 1.22762 0.94019 1.01120 0.91782 1.23556 0.91403 0.90924 1.03155 1.43404 1.14468 1.10248 1.13615 1.97472 1.18171 1.94688 1.52757 0.92355 0.98286 0.88173 0.90963 0.91169 0.89453 0.88743 0.87275 0.87724 0.88627 0.79761 0.76172 0.75514 0.78511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.19 13.96 21.45 0.30 -59.89 16 2 C 0.02 1.06 5.47 84.65 0.46 1.53 16 3 Si 0.94 46.51 27.47 68.60 1.88 48.39 16 4 H -0.27 -13.63 7.11 99.48 0.71 -12.93 16 5 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.25 -11.51 6.54 99.48 0.65 -10.85 16 7 C -0.54 -32.66 9.12 25.60 0.23 -32.43 16 8 H 0.06 4.19 5.20 -2.91 -0.02 4.18 16 9 C 0.17 9.06 3.89 85.63 0.33 9.39 16 10 N -0.56 -27.56 2.77 -829.42 -2.30 -29.86 16 11 C 0.15 6.92 5.07 86.38 0.44 7.36 16 12 C -0.17 -7.01 5.87 -10.79 -0.06 -7.08 16 13 C -0.16 -4.95 10.18 30.62 0.31 -4.64 16 14 C -0.17 -5.54 10.25 30.62 0.31 -5.22 16 15 C 0.55 24.84 6.69 86.82 0.58 25.42 16 16 O -0.57 -26.41 16.57 -3.83 -0.06 -26.47 16 17 C 0.03 1.18 5.68 41.85 0.24 1.41 16 18 C -0.08 -1.54 9.81 22.61 0.22 -1.32 16 19 C -0.05 -0.39 10.16 22.44 0.23 -0.16 16 20 C -0.08 -0.70 10.11 22.42 0.23 -0.47 16 21 C 0.06 1.28 10.68 84.75 0.91 2.19 16 22 N -0.13 -5.06 3.11 -184.89 -0.57 -5.64 16 23 O -0.58 -31.01 15.73 -38.77 -0.61 -31.62 16 24 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 25 H 0.00 -0.03 7.20 -2.39 -0.02 -0.05 16 26 H 0.10 5.76 3.25 -37.57 -0.12 5.64 16 27 H 0.07 3.82 5.50 -2.39 -0.01 3.80 16 28 H 0.07 3.20 6.98 -2.38 -0.02 3.18 16 29 H 0.09 3.84 8.14 -2.39 -0.02 3.82 16 30 H 0.09 2.95 8.03 -2.39 -0.02 2.93 16 31 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 34 H 0.19 2.90 8.06 -2.91 -0.02 2.88 16 35 H 0.22 -0.76 8.06 -2.91 -0.02 -0.78 16 36 H 0.23 -0.71 8.06 -2.91 -0.02 -0.74 16 37 H 0.20 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -96.04 312.61 3.99 -92.06 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.92 Total: 17.06 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 4.43 Total: -4.03 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -2.57 Total: -95.39 kcal Atomic # 8 Polarization: -57.43 SS G_CDS: -0.67 Total: -58.10 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.88 Total: 48.39 kcal Total: -96.04 3.99 -92.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437809.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.745 kcal (2) G-P(sol) polarization free energy of solvation -96.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds