Wall clock time and date at job start Mon Mar 30 2020 02:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99548 * 2 1 4 4 H 1.48502 * 109.47144 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47504 * 300.00017 * 3 2 1 6 6 H 1.48504 * 109.47066 * 60.00462 * 3 2 1 7 7 C 1.37871 * 120.00574 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00059 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99701 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.46501 * 119.99993 * 284.71969 * 10 9 7 12 12 C 1.53005 * 109.47111 * 274.91105 * 11 10 9 13 13 C 1.53007 * 117.49494 * 246.80727 * 12 11 10 14 14 C 1.53002 * 117.49917 * 178.14875 * 12 11 10 15 15 C 1.34776 * 120.00379 * 104.72023 * 10 9 7 16 16 O 1.21590 * 120.00571 * 186.58276 * 15 10 9 17 17 C 1.47524 * 119.99867 * 6.58255 * 15 10 9 18 18 C 1.39995 * 120.59612 * 326.28212 * 17 15 10 19 19 C 1.38336 * 118.34667 * 180.02562 * 18 17 15 20 20 C 1.38356 * 119.45820 * 0.02562 * 19 18 17 21 21 N 1.31878 * 121.18783 * 359.97438 * 20 19 18 22 22 C 1.32230 * 121.80191 * 0.02562 * 21 20 19 23 23 O 1.35426 * 119.80434 * 179.72071 * 22 21 20 24 24 H 0.96999 * 120.00278 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47501 * 59.99710 * 9 7 2 26 26 H 1.09001 * 109.47208 * 299.99829 * 9 7 2 27 27 H 1.09000 * 109.46889 * 34.90930 * 11 10 9 28 28 H 1.09007 * 109.47193 * 154.90918 * 11 10 9 29 29 H 1.08995 * 115.55176 * 32.47517 * 12 11 10 30 30 H 1.08994 * 117.49815 * 359.97438 * 13 12 11 31 31 H 1.08995 * 117.49760 * 145.01938 * 13 12 11 32 32 H 1.08995 * 117.49735 * 214.98022 * 14 12 11 33 33 H 1.08999 * 117.49620 * 359.97438 * 14 12 11 34 34 H 1.07998 * 120.82701 * 359.97438 * 18 17 15 35 35 H 1.08003 * 120.26659 * 179.97438 * 19 18 17 36 36 H 1.08003 * 119.40214 * 180.02562 * 20 19 18 37 37 H 0.96699 * 114.00155 * 89.99646 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1938 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2032 -3.6125 -0.0027 11 6 2.9242 -3.9587 -1.2301 12 6 2.0612 -4.8907 -2.0830 13 6 2.5494 -6.3282 -2.2734 14 6 2.6237 -5.3341 -3.4350 15 6 2.4158 -4.3185 1.1255 16 8 3.2901 -5.1628 1.1588 17 6 1.5876 -4.0669 2.3201 18 6 1.1181 -2.7787 2.6033 19 6 0.3457 -2.5954 3.7362 20 6 0.0624 -3.6785 4.5491 21 7 0.5151 -4.8838 4.2634 22 6 1.2573 -5.1138 3.1935 23 8 1.7055 -6.3668 2.9419 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6242 -2.5575 0.8880 27 1 3.1424 -3.0503 -1.7917 28 1 3.8574 -4.4606 -0.9741 29 1 0.9854 -4.7295 -2.0140 30 1 3.4855 -6.6098 -1.7914 31 1 1.7947 -7.1126 -2.3299 32 1 1.9179 -5.4649 -4.2553 33 1 3.6084 -4.9614 -3.7170 34 1 1.3538 -1.9486 1.9538 35 1 -0.0324 -1.6147 3.9844 36 1 -0.5411 -3.5345 5.4331 37 1 1.1064 -6.8972 2.3989 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103437972.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:53 Heat of formation + Delta-G solvation = 7.315948 kcal Electronic energy + Delta-G solvation = -21725.084226 eV Core-core repulsion = 18469.668695 eV Total energy + Delta-G solvation = -3255.415531 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.47205 -38.68467 -36.91974 -36.72630 -34.96342 -32.66137 -32.21494 -30.07155 -27.93886 -26.57835 -23.95976 -22.98177 -22.74341 -22.10097 -20.55321 -19.16898 -18.30421 -16.79679 -16.74276 -16.36177 -15.81112 -15.67237 -14.67529 -14.52606 -14.43847 -14.33621 -13.52257 -13.26478 -13.08441 -12.77571 -12.50189 -12.04963 -11.85922 -11.39806 -11.38242 -11.28758 -11.17711 -10.98893 -10.63822 -10.38253 -10.17483 -9.86791 -9.63573 -9.51481 -9.27827 -8.90184 -8.64023 -8.52723 -7.79694 -6.37002 -4.46636 1.07752 1.56069 3.11369 3.21327 3.25223 3.38347 3.65002 3.90187 4.12956 4.18860 4.22296 4.93613 4.97928 5.05737 5.17573 5.24175 5.31501 5.38322 5.47870 5.73141 5.81672 5.82880 5.83830 6.11288 6.12057 6.26902 6.34633 6.47939 6.55730 6.58311 6.69270 6.90095 7.05385 7.40108 7.58134 7.79209 7.84015 8.14090 8.25178 8.62629 8.90907 9.22681 10.67869 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.011020 B = 0.009011 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.297707 B = 3106.712127 C = 5181.438673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.068 3.932 3 Si 0.897 3.103 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.208 3.792 10 N -0.587 5.587 11 C 0.150 3.850 12 C -0.160 4.160 13 C -0.178 4.178 14 C -0.178 4.178 15 C 0.561 3.439 16 O -0.547 6.547 17 C -0.197 4.197 18 C -0.029 4.029 19 C -0.196 4.196 20 C 0.131 3.869 21 N -0.521 5.521 22 C 0.349 3.651 23 O -0.465 6.465 24 H 0.268 0.732 25 H 0.033 0.967 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.199 0.801 35 H 0.141 0.859 36 H 0.157 0.843 37 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.190 -5.482 0.397 5.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.583 4.583 8 H 0.084 0.916 9 C 0.089 3.911 10 N -0.316 5.316 11 C 0.027 3.973 12 C -0.180 4.180 13 C -0.215 4.215 14 C -0.216 4.216 15 C 0.348 3.652 16 O -0.427 6.427 17 C -0.204 4.204 18 C -0.054 4.054 19 C -0.216 4.216 20 C -0.025 4.025 21 N -0.240 5.240 22 C 0.170 3.830 23 O -0.271 6.271 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.215 0.785 35 H 0.159 0.841 36 H 0.175 0.825 37 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.580 -6.360 1.231 6.504 hybrid contribution -0.027 1.577 -0.894 1.813 sum -0.607 -4.783 0.336 4.833 Atomic orbital electron populations 1.69933 1.05966 1.27650 1.48435 1.24984 0.94912 0.99445 0.94302 0.86446 0.80301 0.82923 0.77979 1.19468 1.20670 1.20587 1.21509 0.94036 0.90168 1.52548 0.91556 1.20244 0.88325 0.82784 0.99740 1.47994 1.42960 1.32315 1.08355 1.20855 0.93890 0.97997 0.84580 1.22764 1.00523 0.96425 0.98252 1.22997 1.03123 0.92846 1.02532 1.22893 1.02514 1.04425 0.91760 1.17860 0.83317 0.81281 0.82742 1.90722 1.32933 1.35081 1.83918 1.21119 1.05247 0.95533 0.98470 1.23303 0.89437 0.98184 0.94428 1.22171 1.02179 1.00829 0.96432 1.22618 0.94968 0.86793 0.98159 1.67192 1.12481 1.25426 1.18936 1.19112 0.90001 0.85556 0.88345 1.84771 1.46335 1.22139 1.73832 0.92215 0.94917 0.91938 0.89690 0.90435 0.87865 0.88661 0.89515 0.89146 0.88884 0.78481 0.84114 0.82548 0.74832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.20 13.29 55.43 0.74 -21.47 16 2 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 19.19 29.54 -169.99 -5.02 14.17 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.54 -13.09 7.55 -34.44 -0.26 -13.35 16 8 H 0.07 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.21 4.65 4.72 -5.19 -0.02 4.63 16 10 N -0.59 -12.12 2.50 -176.29 -0.44 -12.56 16 11 C 0.15 2.77 5.74 -4.04 -0.02 2.74 16 12 C -0.16 -2.57 6.01 -90.61 -0.54 -3.12 16 13 C -0.18 -2.52 10.18 -26.69 -0.27 -2.79 16 14 C -0.18 -2.35 10.25 -26.69 -0.27 -2.63 16 15 C 0.56 12.00 7.30 -12.48 -0.09 11.91 16 16 O -0.55 -12.68 15.39 -12.77 -0.20 -12.88 16 17 C -0.20 -3.95 5.54 -104.68 -0.58 -4.53 16 18 C -0.03 -0.55 7.55 -38.89 -0.29 -0.85 16 19 C -0.20 -3.14 10.09 -39.50 -0.40 -3.54 16 20 C 0.13 1.98 11.17 -17.49 -0.20 1.78 16 21 N -0.52 -9.17 10.37 -12.98 -0.13 -9.31 16 22 C 0.35 6.60 7.74 -16.61 -0.13 6.47 16 23 O -0.46 -8.29 12.17 -36.03 -0.44 -8.73 16 24 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.42 3.73 -52.40 -0.20 1.22 16 27 H 0.08 1.58 7.91 -51.93 -0.41 1.16 16 28 H 0.08 1.45 6.96 -51.93 -0.36 1.09 16 29 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 30 H 0.09 1.40 8.04 -51.93 -0.42 0.98 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.20 4.23 4.02 -52.49 -0.21 4.02 16 35 H 0.14 1.93 8.06 -52.48 -0.42 1.51 16 36 H 0.16 1.73 8.06 -52.48 -0.42 1.30 16 37 H 0.39 5.11 9.06 45.56 0.41 5.53 16 LS Contribution 316.52 15.07 4.77 4.77 Total: -1.00 -28.85 316.52 -7.59 -36.45 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -3.69 Total: 11.26 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -3.18 Total: -1.70 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.16 Total: -43.33 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.64 Total: -21.61 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.85 -7.59 -36.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437972.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.764 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds