Wall clock time and date at job start Mon Mar 30 2020 02:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99548 * 2 1 4 4 H 1.48502 * 109.47144 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47504 * 300.00017 * 3 2 1 6 6 H 1.48504 * 109.47066 * 60.00462 * 3 2 1 7 7 C 1.37871 * 120.00574 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00059 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99701 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.46501 * 119.99993 * 284.71969 * 10 9 7 12 12 C 1.53005 * 109.47111 * 274.91105 * 11 10 9 13 13 C 1.53007 * 117.49494 * 246.80727 * 12 11 10 14 14 C 1.53002 * 117.49917 * 178.14875 * 12 11 10 15 15 C 1.34776 * 120.00379 * 104.72023 * 10 9 7 16 16 O 1.21590 * 120.00571 * 186.58276 * 15 10 9 17 17 C 1.47524 * 119.99867 * 6.58255 * 15 10 9 18 18 C 1.39995 * 120.59612 * 326.28212 * 17 15 10 19 19 C 1.38336 * 118.34667 * 180.02562 * 18 17 15 20 20 C 1.38356 * 119.45820 * 0.02562 * 19 18 17 21 21 N 1.31878 * 121.18783 * 359.97438 * 20 19 18 22 22 C 1.32230 * 121.80191 * 0.02562 * 21 20 19 23 23 O 1.35426 * 119.80434 * 179.72071 * 22 21 20 24 24 H 0.96999 * 120.00278 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47501 * 59.99710 * 9 7 2 26 26 H 1.09001 * 109.47208 * 299.99829 * 9 7 2 27 27 H 1.09000 * 109.46889 * 34.90930 * 11 10 9 28 28 H 1.09007 * 109.47193 * 154.90918 * 11 10 9 29 29 H 1.08995 * 115.55176 * 32.47517 * 12 11 10 30 30 H 1.08994 * 117.49815 * 359.97438 * 13 12 11 31 31 H 1.08995 * 117.49760 * 145.01938 * 13 12 11 32 32 H 1.08995 * 117.49735 * 214.98022 * 14 12 11 33 33 H 1.08999 * 117.49620 * 359.97438 * 14 12 11 34 34 H 1.07998 * 120.82701 * 359.97438 * 18 17 15 35 35 H 1.08003 * 120.26659 * 179.97438 * 19 18 17 36 36 H 1.08003 * 119.40214 * 180.02562 * 20 19 18 37 37 H 0.96699 * 114.00155 * 89.99646 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1938 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2032 -3.6125 -0.0027 11 6 2.9242 -3.9587 -1.2301 12 6 2.0612 -4.8907 -2.0830 13 6 2.5494 -6.3282 -2.2734 14 6 2.6237 -5.3341 -3.4350 15 6 2.4158 -4.3185 1.1255 16 8 3.2901 -5.1628 1.1588 17 6 1.5876 -4.0669 2.3201 18 6 1.1181 -2.7787 2.6033 19 6 0.3457 -2.5954 3.7362 20 6 0.0624 -3.6785 4.5491 21 7 0.5151 -4.8838 4.2634 22 6 1.2573 -5.1138 3.1935 23 8 1.7055 -6.3668 2.9419 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6242 -2.5575 0.8880 27 1 3.1424 -3.0503 -1.7917 28 1 3.8574 -4.4606 -0.9741 29 1 0.9854 -4.7295 -2.0140 30 1 3.4855 -6.6098 -1.7914 31 1 1.7947 -7.1126 -2.3299 32 1 1.9179 -5.4649 -4.2553 33 1 3.6084 -4.9614 -3.7170 34 1 1.3538 -1.9486 1.9538 35 1 -0.0324 -1.6147 3.9844 36 1 -0.5411 -3.5345 5.4331 37 1 1.1064 -6.8972 2.3989 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103437972.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:53 Heat of formation + Delta-G solvation = -11.563269 kcal Electronic energy + Delta-G solvation = -21725.902891 eV Core-core repulsion = 18469.668695 eV Total energy + Delta-G solvation = -3256.234195 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.93869 -40.19742 -38.30380 -38.05394 -36.62787 -34.48358 -33.64168 -31.43939 -29.68321 -28.11680 -25.53779 -24.53470 -24.24497 -23.21089 -21.90622 -20.69006 -19.70439 -18.61503 -18.26588 -17.93254 -17.24291 -17.06364 -16.39807 -16.01558 -15.81446 -15.73102 -14.94495 -14.79025 -14.58521 -14.27212 -14.14896 -13.43804 -13.42978 -12.98597 -12.86519 -12.72072 -12.57174 -12.37621 -12.34454 -12.07622 -11.75166 -11.34971 -11.09305 -10.91834 -10.81074 -10.53947 -10.20836 -9.96183 -9.47738 -8.24070 -6.39676 -0.30774 0.15850 1.40616 1.45997 1.54908 1.80501 2.14116 2.39979 2.56085 2.79703 2.93438 3.05257 3.57101 3.82584 3.83524 4.00281 4.02587 4.12248 4.13496 4.35908 4.49238 4.53734 4.69366 4.76076 4.82145 4.89024 5.00023 5.11961 5.18271 5.24491 5.25869 5.27464 5.54643 5.64256 5.76248 5.98293 6.49385 6.56138 6.75173 6.83647 7.21405 7.34616 8.80523 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.011020 B = 0.009011 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.297707 B = 3106.712127 C = 5181.438673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.035 3.965 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.551 4.551 8 H 0.052 0.948 9 C 0.223 3.777 10 N -0.587 5.587 11 C 0.150 3.850 12 C -0.184 4.184 13 C -0.171 4.171 14 C -0.154 4.154 15 C 0.557 3.443 16 O -0.573 6.573 17 C -0.222 4.222 18 C -0.044 4.044 19 C -0.189 4.189 20 C 0.147 3.853 21 N -0.528 5.528 22 C 0.346 3.654 23 O -0.477 6.477 24 H 0.272 0.728 25 H 0.012 0.988 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.174 0.826 35 H 0.168 0.832 36 H 0.207 0.793 37 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.904 -5.308 1.071 5.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.168 4.168 3 Si 0.777 3.223 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.589 4.589 8 H 0.070 0.930 9 C 0.103 3.897 10 N -0.316 5.316 11 C 0.027 3.973 12 C -0.203 4.203 13 C -0.208 4.208 14 C -0.192 4.192 15 C 0.346 3.654 16 O -0.454 6.454 17 C -0.229 4.229 18 C -0.069 4.069 19 C -0.209 4.209 20 C -0.009 4.009 21 N -0.248 5.248 22 C 0.167 3.833 23 O -0.286 6.286 24 H 0.081 0.919 25 H 0.030 0.970 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.121 0.879 34 H 0.191 0.809 35 H 0.185 0.815 36 H 0.224 0.776 37 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -1.301 -6.196 1.881 6.605 hybrid contribution 0.167 1.503 -1.054 1.843 sum -1.134 -4.693 0.827 4.898 Atomic orbital electron populations 1.69995 1.06868 1.28451 1.48980 1.25535 0.95532 1.01785 0.93905 0.85601 0.78809 0.79755 0.78127 1.20012 1.20499 1.19737 1.21552 0.93379 0.91228 1.52783 0.92956 1.19984 0.88228 0.82737 0.98762 1.48023 1.42619 1.31864 1.09105 1.20908 0.94068 0.98199 0.84137 1.22581 0.99468 0.97621 1.00663 1.23024 1.02972 0.92126 1.02713 1.23019 1.03121 1.02110 0.90934 1.18148 0.83174 0.80840 0.83235 1.90686 1.34087 1.36229 1.84442 1.21082 1.06611 0.96521 0.98667 1.23092 0.90957 0.97113 0.95757 1.22461 1.00796 1.02545 0.95068 1.23407 0.93473 0.85341 0.98700 1.67343 1.12499 1.26680 1.18256 1.19174 0.90070 0.85560 0.88506 1.84706 1.47503 1.22057 1.74317 0.91902 0.96958 0.91731 0.90478 0.91120 0.89016 0.89410 0.88007 0.87118 0.87900 0.80912 0.81492 0.77635 0.72744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.57 13.29 21.45 0.28 -45.28 16 2 C 0.04 1.70 5.46 84.65 0.46 2.16 16 3 Si 0.95 39.25 29.54 68.60 2.03 41.28 16 4 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 7 C -0.55 -27.15 7.55 25.60 0.19 -26.96 16 8 H 0.05 2.68 7.81 -2.91 -0.02 2.65 16 9 C 0.22 10.30 4.72 85.63 0.40 10.70 16 10 N -0.59 -25.23 2.50 -829.92 -2.07 -27.30 16 11 C 0.15 5.72 5.74 86.38 0.50 6.22 16 12 C -0.18 -5.96 6.01 -10.79 -0.06 -6.03 16 13 C -0.17 -4.71 10.18 30.62 0.31 -4.40 16 14 C -0.15 -3.85 10.25 30.62 0.31 -3.54 16 15 C 0.56 24.62 7.30 86.69 0.63 25.25 16 16 O -0.57 -27.32 15.39 13.27 0.20 -27.12 16 17 C -0.22 -9.00 5.54 -19.91 -0.11 -9.11 16 18 C -0.04 -1.69 7.55 22.72 0.17 -1.52 16 19 C -0.19 -5.65 10.09 22.32 0.23 -5.42 16 20 C 0.15 3.95 11.17 84.71 0.95 4.90 16 21 N -0.53 -17.48 10.37 -308.00 -3.19 -20.68 16 22 C 0.35 12.89 7.74 85.13 0.66 13.55 16 23 O -0.48 -16.91 12.17 -69.95 -0.85 -17.76 16 24 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 25 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.07 3.01 3.73 -2.83 -0.01 3.00 16 27 H 0.08 2.99 7.91 -2.39 -0.02 2.97 16 28 H 0.07 2.76 6.96 -2.38 -0.02 2.74 16 29 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 30 H 0.09 2.56 8.04 -2.39 -0.02 2.54 16 31 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.17 7.57 4.02 -2.91 -0.01 7.56 16 35 H 0.17 4.06 8.06 -2.91 -0.02 4.04 16 36 H 0.21 3.44 8.06 -2.91 -0.02 3.41 16 37 H 0.41 10.59 9.06 -74.06 -0.67 9.92 16 Total: -1.00 -62.29 316.52 1.47 -60.82 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.44 Total: 30.24 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 4.64 Total: 5.80 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -4.98 Total: -93.26 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -0.65 Total: -44.87 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Total: -62.29 1.47 -60.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437972.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.256 kcal (2) G-P(sol) polarization free energy of solvation -62.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds