Wall clock time and date at job start Mon Mar 30 2020 02:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00354 * 3 2 1 5 5 H 1.48506 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99967 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93010 * 179.76605 * 11 10 9 13 13 C 1.38322 * 120.06821 * 0.48125 * 12 11 10 14 14 C 1.38283 * 120.13933 * 359.76809 * 13 12 11 15 15 C 1.50702 * 119.96579 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47132 * 270.02352 * 15 14 13 17 17 C 1.34777 * 119.99835 * 180.02562 * 16 15 14 18 18 O 1.21582 * 119.99734 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99612 * 180.02562 * 17 16 15 20 20 C 1.46503 * 119.99863 * 180.02562 * 19 17 16 21 21 C 1.52999 * 117.49969 * 223.62055 * 20 19 17 22 22 C 1.52998 * 117.50227 * 154.99601 * 20 19 17 23 23 C 1.38123 * 120.06577 * 0.02562 * 14 13 12 24 24 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 26 26 H 1.07990 * 119.96522 * 180.22917 * 12 11 10 27 27 H 1.08001 * 119.93063 * 179.74798 * 13 12 11 28 28 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 29 29 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 30 30 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 31 31 H 0.96999 * 120.00705 * 359.97438 * 19 17 16 32 32 H 1.09008 * 115.54781 * 9.32520 * 20 19 17 33 33 H 1.08996 * 117.49556 * 0.02562 * 21 20 19 34 34 H 1.09003 * 117.50007 * 145.01599 * 21 20 19 35 35 H 1.08994 * 117.50132 * 214.97951 * 22 20 19 36 36 H 1.09001 * 117.49669 * 359.97438 * 22 20 19 37 37 H 1.08006 * 120.03219 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5973 0.1977 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4650 16 7 1.2715 -7.7887 -0.8671 17 6 0.6661 -8.9860 -0.9963 18 8 0.3108 -9.5973 -0.0072 19 7 0.4556 -9.5059 -2.2218 20 6 -0.2029 -10.8070 -2.3623 21 6 0.3903 -11.7939 -3.3696 22 6 -0.9335 -11.0909 -3.6762 23 6 1.4365 -4.7345 0.2252 24 1 -0.4849 0.8401 -0.0004 25 1 3.9527 -2.4857 -0.0140 26 1 5.2810 -4.5475 0.1869 27 1 4.1534 -6.7248 0.4030 28 1 2.1300 -7.9004 1.0432 29 1 0.5456 -7.0925 0.9733 30 1 1.5547 -7.3008 -1.6562 31 1 0.7394 -9.0183 -3.0109 32 1 -0.6329 -11.2173 -1.4485 33 1 1.2709 -11.4753 -3.9275 34 1 0.3510 -12.8540 -3.1187 35 1 -1.8438 -11.6883 -3.6271 36 1 -0.9246 -10.3094 -4.4360 37 1 0.3579 -4.7883 0.2365 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113368273.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:20 Heat of formation + Delta-G solvation = -6.543712 kcal Electronic energy + Delta-G solvation = -19934.820928 eV Core-core repulsion = 16678.804397 eV Total energy + Delta-G solvation = -3256.016531 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.09024 -39.11159 -37.50252 -36.70418 -34.43277 -32.88044 -32.33328 -30.53270 -29.11305 -25.98295 -25.10518 -22.67103 -22.32798 -21.70859 -20.92684 -20.80140 -18.73228 -17.63170 -17.06217 -16.68156 -15.53861 -15.23372 -15.08638 -14.80041 -14.54620 -14.43640 -14.01590 -13.62825 -13.50144 -12.94254 -12.78041 -12.39805 -12.29190 -11.88054 -11.71878 -11.48903 -11.38678 -10.94306 -10.83987 -10.77062 -10.71614 -10.50547 -10.23143 -9.42881 -9.15482 -8.90145 -8.68990 -8.26717 -7.34404 -6.50264 -4.09967 1.84363 2.25235 2.74584 3.09176 3.09549 3.10892 3.13693 3.73823 3.91559 4.17435 4.51526 4.55617 4.69390 4.73310 4.92565 5.05731 5.27046 5.33226 5.49445 5.53859 5.65177 5.76149 5.77713 5.84260 5.93554 6.06220 6.24081 6.38656 6.52923 6.54631 6.80622 6.89111 6.99026 7.18063 7.26032 7.34329 7.69549 7.93659 7.99895 8.59256 8.94913 9.63494 10.67420 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.028603 B = 0.003039 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.668079 B = 9210.104562 C = 9699.328504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.077 4.077 13 C -0.194 4.194 14 C -0.073 4.073 15 C 0.187 3.813 16 N -0.735 5.735 17 C 0.707 3.293 18 O -0.594 6.594 19 N -0.721 5.721 20 C 0.104 3.896 21 C -0.198 4.198 22 C -0.193 4.193 23 C -0.170 4.170 24 H 0.271 0.729 25 H 0.128 0.872 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.399 0.601 31 H 0.397 0.603 32 H 0.139 0.861 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.257 -15.746 -6.244 17.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.109 0.891 9 O -0.079 6.079 10 C 0.096 3.904 11 C -0.245 4.245 12 C -0.095 4.095 13 C -0.214 4.214 14 C -0.074 4.074 15 C 0.063 3.937 16 N -0.390 5.390 17 C 0.407 3.593 18 O -0.472 6.472 19 N -0.374 5.374 20 C -0.003 4.003 21 C -0.237 4.237 22 C -0.232 4.232 23 C -0.190 4.190 24 H 0.081 0.919 25 H 0.145 0.855 26 H 0.127 0.873 27 H 0.125 0.875 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.233 0.767 31 H 0.231 0.769 32 H 0.156 0.844 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.483 -16.052 -5.295 17.084 hybrid contribution 0.856 1.382 -0.872 1.845 sum 3.340 -14.670 -6.167 16.260 Atomic orbital electron populations 1.70029 1.05979 1.27891 1.45673 1.25298 0.95847 0.98863 0.96441 0.85777 0.78713 0.79720 0.79204 1.19496 1.20236 1.19452 1.21276 0.91766 0.80779 1.53198 0.89091 1.83982 1.34266 1.11392 1.78298 1.19326 0.90259 0.88072 0.92726 1.21248 0.93849 0.99112 1.10283 1.20746 0.98569 0.92264 0.97915 1.20488 0.93356 0.97111 1.10412 1.19279 0.93478 0.92843 1.01772 1.20013 0.99990 0.90978 0.82678 1.45256 1.63884 1.19754 1.10076 1.15876 0.78701 0.81292 0.83417 1.90906 1.57584 1.61911 1.36779 1.44479 1.64700 1.21151 1.07083 1.21390 0.99219 0.84375 0.95337 1.23453 0.97182 0.98917 1.04149 1.23402 0.96530 1.03693 0.99538 1.20096 0.99468 0.89831 1.09624 0.91882 0.85474 0.87287 0.87481 0.91044 0.90944 0.76697 0.76857 0.84385 0.88603 0.88085 0.87911 0.88496 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.88 13.67 55.48 0.76 -24.12 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.09 29.55 -169.99 -5.02 15.06 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.39 -10.75 9.49 30.89 0.29 -10.45 16 8 H 0.09 2.28 5.21 -52.49 -0.27 2.00 16 9 O -0.18 -4.89 9.76 0.05 0.00 -4.89 16 10 C 0.15 3.48 6.65 -39.11 -0.26 3.22 16 11 C -0.23 -4.67 9.17 -39.39 -0.36 -5.03 16 12 C -0.08 -1.33 10.04 -39.61 -0.40 -1.72 16 13 C -0.19 -3.14 9.70 -39.53 -0.38 -3.53 16 14 C -0.07 -1.22 5.25 -104.65 -0.55 -1.77 16 15 C 0.19 2.77 5.80 -5.19 -0.03 2.74 16 16 N -0.74 -9.73 5.55 -66.42 -0.37 -10.10 16 17 C 0.71 10.02 8.57 -86.92 -0.74 9.27 16 18 O -0.59 -10.65 15.91 5.29 0.08 -10.57 16 19 N -0.72 -7.62 5.57 -58.67 -0.33 -7.94 16 20 C 0.10 1.00 6.43 -67.93 -0.44 0.56 16 21 C -0.20 -1.45 10.46 -26.73 -0.28 -1.73 16 22 C -0.19 -1.38 10.46 -26.73 -0.28 -1.66 16 23 C -0.17 -3.42 9.65 -39.40 -0.38 -3.80 16 24 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 26 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 27 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 29 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 30 H 0.40 4.60 8.48 -40.82 -0.35 4.25 16 31 H 0.40 3.18 8.84 -40.82 -0.36 2.82 16 32 H 0.14 1.53 7.40 -51.92 -0.38 1.15 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -32.01 325.25 -8.47 -40.48 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -4.59 Total: 10.08 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -3.90 Total: -12.91 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.06 Total: -42.17 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.08 Total: -15.45 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.01 -8.47 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113368273.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.937 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds