Wall clock time and date at job start Mon Mar 30 2020 02:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00354 * 3 2 1 5 5 H 1.48506 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99967 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93010 * 179.76605 * 11 10 9 13 13 C 1.38322 * 120.06821 * 0.48125 * 12 11 10 14 14 C 1.38283 * 120.13933 * 359.76809 * 13 12 11 15 15 C 1.50702 * 119.96579 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47132 * 270.02352 * 15 14 13 17 17 C 1.34777 * 119.99835 * 180.02562 * 16 15 14 18 18 O 1.21582 * 119.99734 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99612 * 180.02562 * 17 16 15 20 20 C 1.46503 * 119.99863 * 180.02562 * 19 17 16 21 21 C 1.52999 * 117.49969 * 223.62055 * 20 19 17 22 22 C 1.52998 * 117.50227 * 154.99601 * 20 19 17 23 23 C 1.38123 * 120.06577 * 0.02562 * 14 13 12 24 24 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 26 26 H 1.07990 * 119.96522 * 180.22917 * 12 11 10 27 27 H 1.08001 * 119.93063 * 179.74798 * 13 12 11 28 28 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 29 29 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 30 30 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 31 31 H 0.96999 * 120.00705 * 359.97438 * 19 17 16 32 32 H 1.09008 * 115.54781 * 9.32520 * 20 19 17 33 33 H 1.08996 * 117.49556 * 0.02562 * 21 20 19 34 34 H 1.09003 * 117.50007 * 145.01599 * 21 20 19 35 35 H 1.08994 * 117.50132 * 214.97951 * 22 20 19 36 36 H 1.09001 * 117.49669 * 359.97438 * 22 20 19 37 37 H 1.08006 * 120.03219 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5973 0.1977 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4650 16 7 1.2715 -7.7887 -0.8671 17 6 0.6661 -8.9860 -0.9963 18 8 0.3108 -9.5973 -0.0072 19 7 0.4556 -9.5059 -2.2218 20 6 -0.2029 -10.8070 -2.3623 21 6 0.3903 -11.7939 -3.3696 22 6 -0.9335 -11.0909 -3.6762 23 6 1.4365 -4.7345 0.2252 24 1 -0.4849 0.8401 -0.0004 25 1 3.9527 -2.4857 -0.0140 26 1 5.2810 -4.5475 0.1869 27 1 4.1534 -6.7248 0.4030 28 1 2.1300 -7.9004 1.0432 29 1 0.5456 -7.0925 0.9733 30 1 1.5547 -7.3008 -1.6562 31 1 0.7394 -9.0183 -3.0109 32 1 -0.6329 -11.2173 -1.4485 33 1 1.2709 -11.4753 -3.9275 34 1 0.3510 -12.8540 -3.1187 35 1 -1.8438 -11.6883 -3.6271 36 1 -0.9246 -10.3094 -4.4360 37 1 0.3579 -4.7883 0.2365 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113368273.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:20 Heat of formation + Delta-G solvation = -28.887615 kcal Electronic energy + Delta-G solvation = -19935.789832 eV Core-core repulsion = 16678.804397 eV Total energy + Delta-G solvation = -3256.985435 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.23327 -40.69520 -38.65301 -38.00590 -35.72381 -34.29960 -33.83382 -31.90934 -30.71307 -27.58743 -26.76809 -23.37165 -23.23341 -23.15155 -22.35067 -21.90196 -19.98397 -19.29686 -18.68670 -17.66338 -16.86390 -16.64006 -16.28032 -16.08690 -16.05696 -15.65691 -15.49135 -15.10859 -14.85993 -14.34384 -13.93457 -13.76198 -13.63517 -13.40740 -13.00640 -12.52325 -12.46953 -12.37891 -12.32792 -12.26047 -12.14162 -11.49885 -11.38941 -11.20755 -10.80100 -10.27675 -9.77441 -9.56716 -9.03493 -8.46831 -6.15537 0.36257 0.70729 1.35914 1.45955 1.52028 1.71971 2.04284 2.17857 2.80721 3.04915 3.11558 3.31424 3.42557 3.82956 3.84670 4.09017 4.10250 4.11542 4.31404 4.43005 4.53345 4.62929 4.73074 4.79631 4.84223 5.02111 5.05211 5.11678 5.24150 5.25980 5.38916 5.56428 5.62474 5.70861 5.72154 5.95884 6.01975 6.17106 6.97865 7.02920 7.52594 7.78223 8.76117 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.028603 B = 0.003039 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.668079 B = 9210.104562 C = 9699.328504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.232 6.232 10 C 0.112 3.888 11 C -0.234 4.234 12 C -0.069 4.069 13 C -0.167 4.167 14 C -0.058 4.058 15 C 0.193 3.807 16 N -0.728 5.728 17 C 0.704 3.296 18 O -0.635 6.635 19 N -0.706 5.706 20 C 0.070 3.930 21 C -0.182 4.182 22 C -0.177 4.177 23 C -0.181 4.181 24 H 0.272 0.728 25 H 0.121 0.879 26 H 0.150 0.850 27 H 0.148 0.852 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.409 0.591 31 H 0.411 0.589 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.889 -17.553 -7.243 19.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.139 6.139 10 C 0.062 3.938 11 C -0.253 4.253 12 C -0.087 4.087 13 C -0.186 4.186 14 C -0.059 4.059 15 C 0.070 3.930 16 N -0.384 5.384 17 C 0.404 3.596 18 O -0.517 6.517 19 N -0.360 5.360 20 C -0.037 4.037 21 C -0.221 4.221 22 C -0.215 4.215 23 C -0.201 4.201 24 H 0.081 0.919 25 H 0.139 0.861 26 H 0.167 0.833 27 H 0.166 0.834 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.245 0.755 31 H 0.248 0.752 32 H 0.135 0.865 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.156 -17.916 -6.347 19.694 hybrid contribution 0.129 1.550 -0.569 1.656 sum 5.285 -16.366 -6.916 18.536 Atomic orbital electron populations 1.70185 1.08080 1.28855 1.48855 1.26591 0.96812 1.02787 0.95876 0.84654 0.77378 0.74274 0.79977 1.17991 1.19865 1.18184 1.21793 0.92563 0.81362 1.53228 0.87875 1.83948 1.35955 1.12566 1.81445 1.19851 0.91663 0.87805 0.94485 1.21389 0.92974 1.00474 1.10482 1.21165 1.00453 0.91089 0.96014 1.21001 0.93005 0.98291 1.06280 1.19430 0.93978 0.92433 1.00029 1.19871 0.99503 0.90035 0.83636 1.45047 1.63868 1.19637 1.09817 1.16010 0.78488 0.81167 0.83927 1.90879 1.59304 1.63019 1.38450 1.44345 1.63876 1.21455 1.06349 1.21478 1.01650 0.84677 0.95867 1.23516 0.97567 0.98878 1.02113 1.23484 0.97002 1.03564 0.97479 1.20220 0.99398 0.90199 1.10249 0.91877 0.86101 0.83280 0.83405 0.89681 0.92198 0.75542 0.75221 0.86502 0.87721 0.87090 0.86876 0.87556 0.87535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.21 13.67 21.61 0.30 -55.91 16 2 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 3 Si 1.02 42.05 29.55 68.60 2.03 44.08 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.41 -23.55 9.49 67.92 0.64 -22.90 16 8 H 0.10 5.32 5.21 -2.91 -0.02 5.30 16 9 O -0.23 -13.70 9.76 -22.74 -0.22 -13.92 16 10 C 0.11 5.36 6.65 22.58 0.15 5.51 16 11 C -0.23 -9.53 9.17 22.39 0.21 -9.32 16 12 C -0.07 -2.14 10.04 22.25 0.22 -1.92 16 13 C -0.17 -4.68 9.70 22.30 0.22 -4.47 16 14 C -0.06 -1.83 5.25 -19.88 -0.10 -1.94 16 15 C 0.19 5.40 5.80 85.63 0.50 5.90 16 16 N -0.73 -18.01 5.55 -482.31 -2.68 -20.68 16 17 C 0.70 19.15 8.57 179.05 1.53 20.68 16 18 O -0.63 -22.60 15.91 -3.97 -0.06 -22.67 16 19 N -0.71 -13.83 5.57 -457.81 -2.55 -16.38 16 20 C 0.07 1.25 6.43 44.99 0.29 1.54 16 21 C -0.18 -2.20 10.46 30.59 0.32 -1.88 16 22 C -0.18 -2.11 10.46 30.59 0.32 -1.79 16 23 C -0.18 -7.39 9.65 22.39 0.22 -7.17 16 24 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 25 H 0.12 5.01 5.64 -2.91 -0.02 4.99 16 26 H 0.15 3.49 8.06 -2.92 -0.02 3.46 16 27 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 28 H 0.09 2.21 8.08 -2.39 -0.02 2.19 16 29 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 30 H 0.41 8.52 8.48 -92.71 -0.79 7.74 16 31 H 0.41 5.67 8.84 -92.71 -0.82 4.85 16 32 H 0.12 2.62 7.40 -2.38 -0.02 2.60 16 33 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.11 4.51 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -74.59 325.25 1.29 -73.30 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -0.49 Total: 30.78 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 4.98 Total: -18.59 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -4.93 Total: -92.98 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -0.29 Total: -36.58 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -74.59 1.29 -73.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113368273.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.410 kcal (2) G-P(sol) polarization free energy of solvation -74.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds