Wall clock time and date at job start Mon Mar 30 2020 02:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47320 * 30.05682 * 3 2 1 5 5 N 1.46903 * 109.47183 * 184.52759 * 4 3 2 6 6 C 1.46900 * 110.99834 * 304.93529 * 5 4 3 7 7 C 1.50700 * 109.46719 * 293.95221 * 6 5 4 8 8 H 1.08003 * 120.00419 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00134 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99589 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00174 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46871 * 60.00437 * 11 9 7 13 13 H 1.48499 * 109.46794 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47270 * 300.00282 * 11 9 7 15 15 C 1.46903 * 110.99776 * 68.88406 * 5 4 3 16 16 C 1.50703 * 109.46848 * 76.13658 * 15 5 4 17 17 C 1.38201 * 119.97250 * 254.85225 * 16 15 5 18 18 C 1.38148 * 120.10816 * 179.73023 * 17 16 15 19 19 C 1.38795 * 120.05715 * 0.54408 * 18 17 16 20 20 O 1.35895 * 120.02818 * 179.70521 * 19 18 17 21 21 C 1.38616 * 119.94345 * 359.73368 * 19 18 17 22 22 C 1.38653 * 119.88901 * 359.97438 * 21 19 18 23 23 O 1.35899 * 120.02449 * 180.02562 * 22 21 19 24 24 H 1.08998 * 109.47457 * 270.04725 * 3 2 1 25 25 H 1.08998 * 109.46502 * 150.05003 * 3 2 1 26 26 H 1.08994 * 109.47643 * 64.52394 * 4 3 2 27 27 H 1.09004 * 109.46769 * 304.52248 * 4 3 2 28 28 H 1.08995 * 109.47597 * 53.94978 * 6 5 4 29 29 H 1.08994 * 109.47089 * 173.95779 * 6 5 4 30 30 H 0.97006 * 119.99662 * 180.02562 * 10 9 7 31 31 H 1.09004 * 109.47019 * 196.13472 * 15 5 4 32 32 H 1.08996 * 109.47531 * 316.13653 * 15 5 4 33 33 H 1.08004 * 119.94166 * 0.02562 * 17 16 15 34 34 H 1.07998 * 119.97129 * 180.25589 * 18 17 16 35 35 H 0.96703 * 114.00296 * 270.02514 * 20 19 18 36 36 H 1.07999 * 120.05776 * 180.02562 * 21 19 18 37 37 H 0.96704 * 113.99919 * 269.97781 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2476 -0.7225 5 7 4.5836 -1.3029 -0.6285 6 6 5.1908 -0.0666 -1.1391 7 6 4.9305 0.0469 -2.6190 8 1 4.3703 -0.7226 -3.1295 9 6 5.4083 1.1327 -3.3218 10 7 6.0917 2.0690 -2.7006 11 14 5.0862 1.2730 -5.1565 12 1 3.6217 1.3038 -5.4010 13 1 5.6999 2.5229 -5.6725 14 1 5.6801 0.1045 -5.8542 15 6 5.0129 -1.5697 0.7508 16 6 4.7992 -3.0269 1.0704 17 6 3.7484 -3.4086 1.8828 18 6 3.5465 -4.7441 2.1731 19 6 4.4057 -5.7050 1.6584 20 8 4.2101 -7.0180 1.9492 21 6 5.4637 -5.3241 0.8479 22 6 5.6606 -3.9837 0.5531 23 8 6.6968 -3.6073 -0.2416 24 1 2.9714 0.0000 1.0276 25 1 2.9708 0.8913 -0.5131 26 1 2.8230 -1.2072 -1.7708 27 1 2.6910 -2.1364 -0.2584 28 1 4.7548 0.7909 -0.6267 29 1 6.2657 -0.0889 -0.9600 30 1 6.4275 2.8331 -3.1950 31 1 6.0702 -1.3260 0.8558 32 1 4.4289 -0.9576 1.4380 33 1 3.0811 -2.6620 2.2876 34 1 2.7222 -5.0403 2.8049 35 1 4.6699 -7.3172 2.7455 36 1 6.1332 -6.0703 0.4461 37 1 7.5134 -3.4174 0.2404 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152850364.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:06 Heat of formation + Delta-G solvation = -50.470471 kcal Electronic energy + Delta-G solvation = -21022.293103 eV Core-core repulsion = 17764.371765 eV Total energy + Delta-G solvation = -3257.921338 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.08007 -39.27451 -38.50592 -37.32020 -36.51863 -34.62745 -32.39633 -31.33513 -30.67795 -28.54011 -26.30932 -25.15661 -23.62698 -22.71630 -21.15454 -19.85826 -18.81389 -18.21335 -17.89971 -17.21519 -16.82056 -16.72844 -16.23022 -16.10590 -15.56566 -15.19954 -14.92787 -14.75981 -14.46906 -14.23743 -13.67826 -13.55036 -13.33539 -13.23256 -13.01396 -12.84708 -12.73913 -12.50139 -12.38017 -12.28829 -11.81338 -11.55252 -11.50707 -11.39366 -11.13378 -10.49180 -9.71451 -9.28714 -8.79683 -8.10009 -6.15496 0.28704 0.38818 1.45904 1.46908 1.53889 1.77543 1.80962 2.46304 2.61041 3.03992 3.19218 3.24436 3.61512 3.64686 3.98111 4.04430 4.20105 4.23060 4.30751 4.50518 4.52744 4.74326 4.76734 4.92942 5.04423 5.06470 5.21871 5.33586 5.42385 5.47034 5.49758 5.67069 5.78196 5.86564 6.19843 6.44001 6.60867 6.76655 6.89776 7.00099 7.05185 7.52934 8.99040 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.016306 B = 0.005299 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.720584 B = 5282.884966 C = 6381.497916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.245 3.755 3 C -0.059 4.059 4 C 0.078 3.922 5 N -0.526 5.526 6 C 0.205 3.795 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.014 3.986 10 N -0.927 5.927 11 Si 0.946 3.054 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.094 3.906 16 C -0.116 4.116 17 C -0.082 4.082 18 C -0.161 4.161 19 C 0.115 3.885 20 O -0.509 6.509 21 C -0.190 4.190 22 C 0.138 3.862 23 O -0.500 6.500 24 H 0.131 0.869 25 H 0.109 0.891 26 H 0.062 0.938 27 H 0.079 0.921 28 H -0.002 1.002 29 H 0.007 0.993 30 H 0.261 0.739 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.411 0.589 36 H 0.134 0.866 37 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.525 -12.005 13.860 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.071 4.071 3 C -0.101 4.101 4 C -0.052 4.052 5 N -0.248 5.248 6 C 0.079 3.921 7 C -0.551 4.551 8 H 0.072 0.928 9 C -0.185 4.185 10 N -0.568 5.568 11 Si 0.773 3.227 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.202 1.202 15 C -0.034 4.034 16 C -0.117 4.117 17 C -0.101 4.101 18 C -0.179 4.179 19 C 0.070 3.930 20 O -0.322 6.322 21 C -0.209 4.209 22 C 0.092 3.908 23 O -0.312 6.312 24 H 0.149 0.851 25 H 0.126 0.874 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.016 0.984 29 H 0.026 0.974 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.270 0.730 36 H 0.152 0.848 37 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -1.620 -12.292 12.574 17.658 hybrid contribution 0.979 1.000 -0.101 1.403 sum -0.642 -11.292 12.473 16.837 Atomic orbital electron populations 1.81163 1.14174 1.10881 1.11087 1.29389 0.95214 0.91320 0.91225 1.20155 0.80392 1.04009 1.05558 1.21934 0.88347 0.94623 1.00342 1.62150 1.05879 1.37697 1.19120 1.19500 0.93532 0.85227 0.93826 1.21410 1.33605 1.05282 0.94848 0.92837 1.25572 0.95335 0.95763 1.01821 1.70016 1.38041 1.11335 1.37387 0.85788 0.78366 0.77105 0.81436 1.19927 1.21132 1.20203 1.20950 1.01283 0.91399 0.89720 1.20325 0.97244 0.95806 0.98370 1.21060 0.96073 0.96235 0.96690 1.21558 1.01144 0.92407 1.02778 1.18304 0.93935 0.83817 0.96937 1.84777 1.74869 1.21648 1.50933 1.21765 1.00658 0.96019 1.02436 1.18246 0.90829 0.90848 0.90827 1.84933 1.22188 1.89301 1.34751 0.85100 0.87353 0.91915 0.90278 0.98407 0.97447 0.92964 0.90758 0.91886 0.83500 0.83588 0.72999 0.84763 0.74020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -17.28 18.54 20.01 0.37 -16.91 16 2 C 0.25 7.51 15.43 89.44 1.38 8.89 16 3 C -0.06 -1.68 4.93 28.79 0.14 -1.53 16 4 C 0.08 2.54 4.96 86.30 0.43 2.96 16 5 N -0.53 -19.17 4.62 -905.37 -4.18 -23.35 16 6 C 0.20 9.28 4.36 85.56 0.37 9.65 16 7 C -0.51 -26.72 8.58 25.60 0.22 -26.50 16 8 H 0.05 2.84 7.10 -2.91 -0.02 2.82 16 9 C 0.01 0.72 5.46 84.65 0.46 1.19 16 10 N -0.93 -51.94 13.29 21.45 0.28 -51.65 16 11 Si 0.95 43.27 29.54 68.60 2.03 45.30 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 14 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 15 C 0.09 2.63 4.63 85.56 0.40 3.03 16 16 C -0.12 -2.97 4.84 -19.75 -0.10 -3.06 16 17 C -0.08 -1.72 9.03 22.24 0.20 -1.52 16 18 C -0.16 -3.18 9.98 22.38 0.22 -2.96 16 19 C 0.11 2.47 6.70 22.49 0.15 2.63 16 20 O -0.51 -9.25 13.50 -92.37 -1.25 -10.50 16 21 C -0.19 -4.56 9.93 22.46 0.22 -4.34 16 22 C 0.14 3.71 6.67 22.49 0.15 3.86 16 23 O -0.50 -14.39 12.83 -92.42 -1.19 -15.58 16 24 H 0.13 2.83 6.25 -2.39 -0.01 2.82 16 25 H 0.11 3.58 6.48 -2.39 -0.02 3.56 16 26 H 0.06 2.38 7.00 -2.39 -0.02 2.36 16 27 H 0.08 2.31 6.95 -2.38 -0.02 2.29 16 28 H 0.00 -0.08 5.98 -2.39 -0.01 -0.09 16 29 H 0.01 0.37 7.82 -2.39 -0.02 0.35 16 30 H 0.26 14.07 8.31 -92.70 -0.77 13.30 16 31 H 0.07 2.15 7.59 -2.39 -0.02 2.14 16 32 H 0.06 1.45 5.85 -2.39 -0.01 1.44 16 33 H 0.15 2.42 8.00 -2.91 -0.02 2.40 16 34 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 35 H 0.41 2.98 9.06 -74.05 -0.67 2.31 16 36 H 0.13 3.00 8.06 -2.91 -0.02 2.97 16 37 H 0.40 7.56 9.06 -74.05 -0.67 6.89 16 Total: -1.00 -68.25 320.70 0.11 -68.14 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -0.21 Total: 12.25 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 4.25 Total: -7.70 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -3.53 Total: -91.91 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -2.43 Total: -26.07 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -68.25 0.11 -68.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152850364.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.668 kcal (2) G-P(sol) polarization free energy of solvation -68.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds