Wall clock time and date at job start Mon Mar 30 2020 02:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00061 * 2 1 4 4 H 1.48507 * 109.46903 * 240.00258 * 3 2 1 5 5 H 1.48501 * 109.47146 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47211 * 120.00204 * 3 2 1 7 7 C 1.37878 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00168 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99921 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47246 * 180.02562 * 9 7 2 11 11 C 1.46501 * 119.99839 * 278.40110 * 10 9 7 12 12 C 1.53004 * 109.46924 * 265.30836 * 11 10 9 13 13 C 1.53008 * 117.49351 * 243.49931 * 12 11 10 14 14 C 1.52997 * 117.49838 * 174.84261 * 12 11 10 15 15 C 1.34773 * 119.99985 * 98.39502 * 10 9 7 16 16 O 1.21582 * 119.99610 * 186.10573 * 15 10 9 17 17 C 1.47610 * 120.00124 * 6.11309 * 15 10 9 18 18 C 1.40281 * 120.50110 * 150.03051 * 17 15 10 19 19 C 1.37951 * 118.36245 * 180.02562 * 18 17 15 20 20 C 1.39169 * 119.26058 * 0.02562 * 19 18 17 21 21 O 1.35500 * 119.52557 * 180.02562 * 20 19 18 22 22 N 1.32414 * 120.95016 * 359.97438 * 20 19 18 23 23 C 1.31666 * 121.79389 * 0.02562 * 22 20 19 24 24 H 0.96999 * 120.00066 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47365 * 59.99749 * 9 7 2 26 26 H 1.09006 * 109.46767 * 299.99995 * 9 7 2 27 27 H 1.09008 * 109.46928 * 25.29949 * 11 10 9 28 28 H 1.08994 * 109.47489 * 145.30060 * 11 10 9 29 29 H 1.08994 * 115.54898 * 29.16007 * 12 11 10 30 30 H 1.08998 * 117.49890 * 359.97438 * 13 12 11 31 31 H 1.08992 * 117.49566 * 145.01801 * 13 12 11 32 32 H 1.09000 * 117.49514 * 214.97606 * 14 12 11 33 33 H 1.08997 * 117.49850 * 359.97438 * 14 12 11 34 34 H 1.08000 * 120.82083 * 359.97438 * 18 17 15 35 35 H 1.07999 * 120.37040 * 179.72148 * 19 18 17 36 36 H 0.96701 * 113.99878 * 89.99998 * 21 20 19 37 37 H 1.08005 * 119.68370 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2029 -3.6127 -0.0015 11 6 2.8207 -4.0485 -1.2563 12 6 2.0147 -5.2076 -1.8461 13 6 2.7145 -6.5623 -1.9726 14 6 2.4297 -5.7277 -3.2237 15 6 2.5104 -4.2362 1.1532 16 8 3.3809 -5.0847 1.1727 17 6 1.7901 -3.8890 2.3940 18 6 1.6019 -4.8482 3.4001 19 6 0.9220 -4.4761 4.5413 20 6 0.4483 -3.1725 4.6564 21 8 -0.2198 -2.8011 5.7752 22 7 0.6420 -2.2897 3.6887 23 6 1.2853 -2.6021 2.5832 24 1 -0.4850 0.8400 0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6239 -2.5574 0.8881 27 1 2.8332 -3.2183 -1.9626 28 1 3.8420 -4.3770 -1.0637 29 1 0.9515 -5.2108 -1.6061 30 1 3.7492 -6.6277 -1.6360 31 1 2.1115 -7.4567 -1.8163 32 1 1.6394 -6.0735 -3.8901 33 1 3.2767 -5.2439 -3.7102 34 1 1.9792 -5.8534 3.2839 35 1 0.7548 -5.1898 5.3345 36 1 0.3485 -2.4494 6.4741 37 1 1.4243 -1.8549 1.8159 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171546668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:55 Heat of formation + Delta-G solvation = 9.606455 kcal Electronic energy + Delta-G solvation = -21457.766307 eV Core-core repulsion = 18202.450100 eV Total energy + Delta-G solvation = -3255.316207 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.41860 -38.93213 -37.07906 -36.49271 -35.07077 -32.67240 -32.11233 -30.43241 -27.89179 -26.44809 -23.70556 -23.16959 -22.76164 -22.09298 -20.57993 -19.05408 -18.58108 -17.10863 -16.74751 -16.27779 -15.72459 -15.59277 -14.69594 -14.62668 -14.48785 -13.99537 -13.77649 -13.27856 -12.96457 -12.67240 -12.44880 -12.21954 -11.96387 -11.59177 -11.39689 -11.28799 -11.08801 -11.00689 -10.59469 -10.33465 -10.15511 -9.86654 -9.62115 -9.56293 -9.33537 -8.85639 -8.75037 -8.35539 -7.85073 -6.32889 -4.45167 1.05340 1.59738 3.20194 3.26185 3.26763 3.33857 3.69750 3.85239 4.12426 4.20850 4.31338 4.94662 5.01690 5.08682 5.17606 5.23397 5.27303 5.34325 5.44511 5.62180 5.75103 5.83031 6.06685 6.10990 6.12378 6.17724 6.29361 6.34482 6.48791 6.52916 6.67365 7.02982 7.04928 7.38633 7.61246 7.67959 7.83775 8.19715 8.34425 8.63166 8.85967 9.24748 10.71366 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.010312 B = 0.008724 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.586345 B = 3208.886990 C = 5450.016512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.073 3.927 3 Si 0.900 3.100 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.557 4.557 8 H 0.068 0.932 9 C 0.209 3.791 10 N -0.584 5.584 11 C 0.152 3.848 12 C -0.162 4.162 13 C -0.174 4.174 14 C -0.179 4.179 15 C 0.565 3.435 16 O -0.564 6.564 17 C -0.202 4.202 18 C -0.013 4.013 19 C -0.214 4.214 20 C 0.318 3.682 21 O -0.486 6.486 22 N -0.505 5.505 23 C 0.150 3.850 24 H 0.272 0.728 25 H 0.039 0.961 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.398 0.602 37 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.220 -7.606 2.690 8.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.595 4.595 8 H 0.086 0.914 9 C 0.089 3.911 10 N -0.313 5.313 11 C 0.029 3.971 12 C -0.181 4.181 13 C -0.211 4.211 14 C -0.217 4.217 15 C 0.353 3.647 16 O -0.445 6.445 17 C -0.207 4.207 18 C -0.039 4.039 19 C -0.236 4.236 20 C 0.139 3.861 21 O -0.293 6.293 22 N -0.223 5.223 23 C -0.006 4.006 24 H 0.081 0.919 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.255 0.745 37 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 1.638 -7.255 2.534 7.858 hybrid contribution 0.823 0.250 0.240 0.893 sum 2.461 -7.005 2.774 7.927 Atomic orbital electron populations 1.69905 1.06053 1.28190 1.46675 1.25015 0.94927 0.99606 0.93838 0.86501 0.79643 0.82122 0.79050 1.19923 1.20883 1.19725 1.21401 0.94083 0.90104 1.53889 0.91409 1.20274 0.88203 0.82696 0.99919 1.48021 1.44221 1.33493 1.05573 1.20873 0.95575 0.95242 0.85424 1.22789 1.00343 0.95673 0.99286 1.22969 1.01752 0.94720 1.01709 1.22915 1.03382 1.04567 0.90827 1.17896 0.82470 0.81073 0.83271 1.90676 1.32666 1.34843 1.86329 1.21098 1.05512 0.96809 0.97247 1.21466 0.92462 0.99388 0.90598 1.21870 1.03470 0.97555 1.00660 1.19641 0.89609 0.89052 0.87819 1.84693 1.36078 1.84608 1.23933 1.67541 1.15666 1.36859 1.02281 1.25542 0.85673 0.96559 0.92782 0.91855 0.94334 0.92331 0.89375 0.90759 0.87924 0.88693 0.89544 0.89163 0.88847 0.84149 0.84447 0.74509 0.74984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.96 13.29 55.43 0.74 -22.23 16 2 C 0.07 1.83 5.34 -17.82 -0.10 1.73 16 3 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.56 -13.64 7.48 -34.44 -0.26 -13.90 16 8 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.21 4.77 4.62 -5.19 -0.02 4.74 16 10 N -0.58 -12.08 2.47 -176.25 -0.44 -12.52 16 11 C 0.15 2.75 5.69 -4.04 -0.02 2.73 16 12 C -0.16 -2.58 5.98 -90.62 -0.54 -3.12 16 13 C -0.17 -2.46 10.18 -26.69 -0.27 -2.74 16 14 C -0.18 -2.33 10.25 -26.69 -0.27 -2.61 16 15 C 0.56 11.90 7.44 -12.44 -0.09 11.80 16 16 O -0.56 -12.49 16.39 5.29 0.09 -12.40 16 17 C -0.20 -4.02 5.59 -104.83 -0.59 -4.61 16 18 C -0.01 -0.22 9.72 -38.92 -0.38 -0.59 16 19 C -0.21 -3.25 10.02 -39.34 -0.39 -3.65 16 20 C 0.32 5.50 7.74 -16.96 -0.13 5.37 16 21 O -0.49 -7.07 13.55 -18.19 -0.25 -7.31 16 22 N -0.51 -10.51 10.37 -12.96 -0.13 -10.64 16 23 C 0.15 3.21 8.66 -17.14 -0.15 3.06 16 24 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.04 0.93 8.13 -51.93 -0.42 0.50 16 26 H 0.06 1.41 4.07 -51.93 -0.21 1.20 16 27 H 0.09 1.58 8.04 -51.92 -0.42 1.16 16 28 H 0.07 1.35 7.22 -51.93 -0.37 0.98 16 29 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 30 H 0.09 1.37 8.03 -51.93 -0.42 0.96 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.14 2.10 7.99 -52.49 -0.42 1.68 16 35 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.40 3.58 9.06 45.56 0.41 3.99 16 37 H 0.24 5.54 3.07 -52.48 -0.16 5.38 16 LS Contribution 318.01 15.07 4.79 4.79 Total: -1.00 -28.99 318.01 -7.11 -36.10 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -3.67 Total: 11.21 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -3.22 Total: -1.76 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.17 Total: -45.39 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.16 Total: -19.71 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.99 -7.11 -36.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171546668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.703 kcal (2) G-P(sol) polarization free energy of solvation -28.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds