Wall clock time and date at job start Mon Mar 30 2020 02:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00061 * 2 1 4 4 H 1.48507 * 109.46903 * 240.00258 * 3 2 1 5 5 H 1.48501 * 109.47146 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47211 * 120.00204 * 3 2 1 7 7 C 1.37878 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00168 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99921 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47246 * 180.02562 * 9 7 2 11 11 C 1.46501 * 119.99839 * 278.40110 * 10 9 7 12 12 C 1.53004 * 109.46924 * 265.30836 * 11 10 9 13 13 C 1.53008 * 117.49351 * 243.49931 * 12 11 10 14 14 C 1.52997 * 117.49838 * 174.84261 * 12 11 10 15 15 C 1.34773 * 119.99985 * 98.39502 * 10 9 7 16 16 O 1.21582 * 119.99610 * 186.10573 * 15 10 9 17 17 C 1.47610 * 120.00124 * 6.11309 * 15 10 9 18 18 C 1.40281 * 120.50110 * 150.03051 * 17 15 10 19 19 C 1.37951 * 118.36245 * 180.02562 * 18 17 15 20 20 C 1.39169 * 119.26058 * 0.02562 * 19 18 17 21 21 O 1.35500 * 119.52557 * 180.02562 * 20 19 18 22 22 N 1.32414 * 120.95016 * 359.97438 * 20 19 18 23 23 C 1.31666 * 121.79389 * 0.02562 * 22 20 19 24 24 H 0.96999 * 120.00066 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47365 * 59.99749 * 9 7 2 26 26 H 1.09006 * 109.46767 * 299.99995 * 9 7 2 27 27 H 1.09008 * 109.46928 * 25.29949 * 11 10 9 28 28 H 1.08994 * 109.47489 * 145.30060 * 11 10 9 29 29 H 1.08994 * 115.54898 * 29.16007 * 12 11 10 30 30 H 1.08998 * 117.49890 * 359.97438 * 13 12 11 31 31 H 1.08992 * 117.49566 * 145.01801 * 13 12 11 32 32 H 1.09000 * 117.49514 * 214.97606 * 14 12 11 33 33 H 1.08997 * 117.49850 * 359.97438 * 14 12 11 34 34 H 1.08000 * 120.82083 * 359.97438 * 18 17 15 35 35 H 1.07999 * 120.37040 * 179.72148 * 19 18 17 36 36 H 0.96701 * 113.99878 * 89.99998 * 21 20 19 37 37 H 1.08005 * 119.68370 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2029 -3.6127 -0.0015 11 6 2.8207 -4.0485 -1.2563 12 6 2.0147 -5.2076 -1.8461 13 6 2.7145 -6.5623 -1.9726 14 6 2.4297 -5.7277 -3.2237 15 6 2.5104 -4.2362 1.1532 16 8 3.3809 -5.0847 1.1727 17 6 1.7901 -3.8890 2.3940 18 6 1.6019 -4.8482 3.4001 19 6 0.9220 -4.4761 4.5413 20 6 0.4483 -3.1725 4.6564 21 8 -0.2198 -2.8011 5.7752 22 7 0.6420 -2.2897 3.6887 23 6 1.2853 -2.6021 2.5832 24 1 -0.4850 0.8400 0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6239 -2.5574 0.8881 27 1 2.8332 -3.2183 -1.9626 28 1 3.8420 -4.3770 -1.0637 29 1 0.9515 -5.2108 -1.6061 30 1 3.7492 -6.6277 -1.6360 31 1 2.1115 -7.4567 -1.8163 32 1 1.6394 -6.0735 -3.8901 33 1 3.2767 -5.2439 -3.7102 34 1 1.9792 -5.8534 3.2839 35 1 0.7548 -5.1898 5.3345 36 1 0.3485 -2.4494 6.4741 37 1 1.4243 -1.8549 1.8159 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171546668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:54 Heat of formation + Delta-G solvation = -10.876383 kcal Electronic energy + Delta-G solvation = -21458.654509 eV Core-core repulsion = 18202.450100 eV Total energy + Delta-G solvation = -3256.204409 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.90328 -40.41201 -38.31961 -37.85890 -36.70581 -34.52317 -33.53477 -31.86331 -29.65733 -27.95624 -25.39658 -24.56707 -24.38219 -23.18181 -21.90693 -20.58775 -19.83857 -18.70803 -18.56394 -17.85923 -17.13284 -16.89302 -16.43247 -16.21874 -15.83908 -15.48365 -15.10290 -14.75156 -14.37209 -14.27393 -14.10729 -13.69030 -13.43725 -13.02390 -12.82494 -12.77591 -12.59189 -12.37889 -12.32733 -12.02243 -11.79675 -11.35052 -11.00343 -10.96570 -10.79596 -10.65958 -10.30149 -9.84288 -9.52510 -8.25726 -6.43318 -0.36320 0.21739 1.43448 1.45175 1.52284 1.77027 2.15338 2.39963 2.54647 2.84670 2.94928 3.03981 3.57346 3.83181 3.85510 3.94438 4.01846 4.04657 4.15027 4.33134 4.40761 4.65413 4.77475 4.79682 4.81948 4.85117 4.92783 5.02346 5.14697 5.16833 5.27349 5.28810 5.54334 5.61941 5.74921 5.93902 6.47514 6.62053 6.72771 6.92043 7.18051 7.31432 8.77950 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.010312 B = 0.008724 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.586345 B = 3208.886990 C = 5450.016512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.033 3.967 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.557 4.557 8 H 0.060 0.940 9 C 0.225 3.775 10 N -0.587 5.587 11 C 0.151 3.849 12 C -0.187 4.187 13 C -0.169 4.169 14 C -0.155 4.155 15 C 0.562 3.438 16 O -0.579 6.579 17 C -0.220 4.220 18 C -0.008 4.008 19 C -0.189 4.189 20 C 0.318 3.682 21 O -0.487 6.487 22 N -0.540 5.540 23 C 0.132 3.868 24 H 0.271 0.729 25 H 0.020 0.980 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.163 0.837 35 H 0.184 0.816 36 H 0.423 0.577 37 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.583 -8.869 3.559 9.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.170 4.170 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.595 4.595 8 H 0.079 0.921 9 C 0.104 3.896 10 N -0.315 5.315 11 C 0.029 3.971 12 C -0.206 4.206 13 C -0.206 4.206 14 C -0.192 4.192 15 C 0.351 3.649 16 O -0.461 6.461 17 C -0.226 4.226 18 C -0.034 4.034 19 C -0.210 4.210 20 C 0.139 3.861 21 O -0.298 6.298 22 N -0.259 5.259 23 C -0.023 4.023 24 H 0.081 0.919 25 H 0.038 0.962 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.181 0.819 35 H 0.201 0.799 36 H 0.284 0.716 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.021 -8.519 3.408 9.395 hybrid contribution 0.683 0.594 0.103 0.911 sum 2.704 -7.925 3.511 9.080 Atomic orbital electron populations 1.69997 1.07239 1.28722 1.48035 1.25654 0.95513 1.02306 0.93566 0.85652 0.78555 0.78814 0.79055 1.19196 1.20588 1.19761 1.21512 0.93707 0.91017 1.53293 0.92141 1.19931 0.88157 0.82966 0.98501 1.48035 1.43833 1.32976 1.06648 1.20961 0.95707 0.96006 0.84454 1.22619 0.99397 0.96146 1.02423 1.23007 1.01360 0.94047 1.02184 1.23035 1.03835 1.02533 0.89795 1.18119 0.82330 0.80784 0.83663 1.90648 1.33308 1.35558 1.86628 1.21076 1.06484 0.97180 0.97823 1.21766 0.91994 0.99584 0.90008 1.22242 1.00857 0.97144 1.00756 1.19897 0.88912 0.89501 0.87769 1.84650 1.36651 1.84785 1.23690 1.67414 1.16669 1.38835 1.03025 1.24942 0.87477 0.96786 0.93084 0.91934 0.96228 0.93169 0.89893 0.91013 0.89248 0.89107 0.88343 0.87294 0.87690 0.81918 0.79859 0.71570 0.77817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.92 13.29 21.45 0.28 -48.64 16 2 C 0.03 1.70 5.34 84.66 0.45 2.15 16 3 Si 0.95 41.13 29.54 68.60 2.03 43.15 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.56 -28.25 7.48 25.60 0.19 -28.06 16 8 H 0.06 3.09 7.81 -2.91 -0.02 3.06 16 9 C 0.23 10.75 4.62 85.63 0.40 11.15 16 10 N -0.59 -25.04 2.47 -829.81 -2.05 -27.09 16 11 C 0.15 5.59 5.69 86.38 0.49 6.08 16 12 C -0.19 -5.93 5.98 -10.79 -0.06 -5.99 16 13 C -0.17 -4.54 10.18 30.62 0.31 -4.23 16 14 C -0.15 -3.74 10.25 30.62 0.31 -3.42 16 15 C 0.56 24.01 7.44 86.72 0.64 24.65 16 16 O -0.58 -25.58 16.39 -3.98 -0.07 -25.65 16 17 C -0.22 -8.81 5.59 -20.00 -0.11 -8.92 16 18 C -0.01 -0.24 9.72 22.70 0.22 -0.02 16 19 C -0.19 -5.11 10.02 22.43 0.22 -4.88 16 20 C 0.32 10.39 7.74 84.83 0.66 11.04 16 21 O -0.49 -12.81 13.55 -88.02 -1.19 -14.00 16 22 N -0.54 -22.50 10.37 -307.81 -3.19 -25.69 16 23 C 0.13 5.82 8.66 85.03 0.74 6.56 16 24 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 25 H 0.02 1.00 8.13 -2.39 -0.02 0.98 16 26 H 0.05 2.56 4.07 -2.39 -0.01 2.55 16 27 H 0.08 3.07 8.04 -2.38 -0.02 3.05 16 28 H 0.07 2.65 7.22 -2.39 -0.02 2.63 16 29 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.09 2.52 8.03 -2.39 -0.02 2.50 16 31 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.16 4.37 7.99 -2.91 -0.02 4.34 16 35 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 36 H 0.42 6.29 9.06 -74.06 -0.67 5.62 16 37 H 0.21 10.18 3.07 -2.91 -0.01 10.17 16 Total: -1.00 -63.70 318.01 0.71 -62.99 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: 0.44 Total: 28.81 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 4.46 Total: 6.12 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -4.96 Total: -101.42 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -1.26 Total: -39.65 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Total: -63.70 0.71 -62.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171546668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.112 kcal (2) G-P(sol) polarization free energy of solvation -63.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds