Wall clock time and date at job start Mon Mar 30 2020 01:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99737 * 2 1 4 4 H 1.48498 * 109.46729 * 239.99862 * 3 2 1 5 5 H 1.48499 * 109.46804 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47270 * 119.99953 * 3 2 1 7 7 C 1.37876 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99970 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99962 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47018 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47038 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.47031 * 180.02562 * 11 10 9 13 13 C 1.47916 * 111.00166 * 190.00486 * 12 11 10 14 14 C 1.54599 * 102.62694 * 265.49414 * 13 12 11 15 15 C 1.51578 * 102.83971 * 334.45659 * 14 13 12 16 16 C 1.39007 * 107.94460 * 15.93824 * 15 14 13 17 17 C 1.39365 * 119.08854 * 180.76913 * 16 15 14 18 18 C 1.37947 * 120.19333 * 359.73187 * 17 16 15 19 19 C 1.38255 * 120.27020 * 0.02562 * 18 17 16 20 20 C 1.37870 * 131.56947 * 196.35895 * 15 14 13 21 21 N 1.48010 * 119.95895 * 359.25510 * 20 15 14 22 22 O 1.21796 * 119.99799 * 180.02562 * 21 20 15 23 23 O 1.21796 * 119.99760 * 0.02562 * 21 20 15 24 24 H 0.96996 * 120.00587 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47126 * 59.99700 * 9 7 2 26 26 H 1.09003 * 109.46989 * 299.99545 * 9 7 2 27 27 H 1.09001 * 109.47305 * 60.00522 * 10 9 7 28 28 H 1.08995 * 109.47459 * 300.00071 * 10 9 7 29 29 H 1.09001 * 109.46891 * 60.00842 * 11 10 9 30 30 H 1.08995 * 109.47347 * 300.00499 * 11 10 9 31 31 H 1.08997 * 110.77267 * 23.77152 * 13 12 11 32 32 H 1.08991 * 110.78038 * 147.20517 * 13 12 11 33 33 H 1.08998 * 110.74270 * 92.79618 * 14 13 12 34 34 H 1.08997 * 110.73819 * 216.12028 * 14 13 12 35 35 H 1.07995 * 119.89933 * 179.71094 * 17 16 15 36 36 H 1.08009 * 119.86650 * 179.97438 * 18 17 16 37 37 H 1.08001 * 120.06025 * 180.09919 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0005 11 6 1.4805 -4.9870 0.0012 12 7 2.4352 -6.1035 0.0018 13 6 1.7462 -7.3903 -0.2375 14 6 1.4938 -7.9103 1.1964 15 6 2.5890 -7.2347 1.9974 16 6 3.1007 -6.1942 1.2306 17 6 4.1408 -5.4219 1.7443 18 6 4.6478 -5.6876 2.9994 19 6 4.1285 -6.7216 3.7562 20 6 3.0975 -7.4942 3.2523 21 7 2.5398 -8.6011 4.0613 22 8 2.9881 -8.8308 5.1702 23 8 1.6326 -9.2823 3.6181 24 1 -0.4851 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6242 -2.5567 0.8904 27 1 2.8721 -3.6042 0.8906 28 1 2.8721 -3.6042 -0.8894 29 1 0.8537 -5.0451 -0.8887 30 1 0.8541 -5.0445 0.8913 31 1 0.8043 -7.2326 -0.7629 32 1 2.3884 -8.0760 -0.7900 33 1 0.5102 -7.6024 1.5512 34 1 1.5982 -8.9945 1.2378 35 1 4.5513 -4.6133 1.1579 36 1 5.4542 -5.0860 3.3922 37 1 4.5269 -6.9256 4.7391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178946753.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:42 Heat of formation + Delta-G solvation = 25.783132 kcal Electronic energy + Delta-G solvation = -20986.469333 eV Core-core repulsion = 17731.854600 eV Total energy + Delta-G solvation = -3254.614734 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.30524 -40.98935 -37.37124 -36.56449 -34.47193 -32.88227 -31.68075 -29.96072 -29.42765 -26.47099 -26.36490 -23.43958 -23.04290 -21.99662 -21.35857 -20.22168 -18.69748 -18.56353 -17.59735 -16.48944 -16.37408 -16.00533 -15.71712 -15.47723 -14.58170 -14.29433 -13.96091 -13.32736 -13.10993 -12.70365 -12.41561 -12.31662 -12.22228 -11.97738 -11.64678 -11.62729 -11.35229 -11.16618 -11.06518 -10.93702 -10.70492 -10.62668 -9.90462 -9.85207 -9.54376 -9.38932 -9.16978 -8.42638 -8.22065 -6.07717 -4.10820 -0.19427 0.78187 1.32948 1.37232 3.10328 3.27638 3.32771 3.34200 3.42491 4.05223 4.30733 4.39427 4.52861 4.77205 4.78378 4.86747 5.00088 5.06475 5.28195 5.36596 5.46799 5.48579 5.58658 5.66653 5.73616 5.87543 5.91800 5.98713 6.05917 6.36773 6.46034 6.47923 6.84097 6.93967 7.04573 7.55744 7.62588 7.68789 7.90465 8.32546 8.95492 9.53792 11.03622 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024402 B = 0.004015 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.173270 B = 6972.055803 C = 7448.477820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.111 4.111 11 C 0.055 3.945 12 N -0.490 5.490 13 C 0.047 3.953 14 C -0.110 4.110 15 C -0.083 4.083 16 C 0.111 3.889 17 C -0.057 4.057 18 C -0.101 4.101 19 C -0.077 4.077 20 C -0.017 4.017 21 N 0.033 4.967 22 O -0.171 6.171 23 O -0.163 6.163 24 H 0.262 0.738 25 H 0.017 0.983 26 H 0.014 0.986 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.826 -15.209 3.239 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.149 4.149 11 C -0.069 4.069 12 N -0.207 5.207 13 C -0.080 4.080 14 C -0.148 4.148 15 C -0.087 4.087 16 C 0.013 3.987 17 C -0.077 4.077 18 C -0.120 4.120 19 C -0.097 4.097 20 C -0.101 4.101 21 N 0.550 4.450 22 O -0.385 6.385 23 O -0.379 6.379 24 H 0.071 0.929 25 H 0.035 0.965 26 H 0.032 0.968 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.168 0.832 36 H 0.170 0.830 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.238 -14.436 2.376 16.323 hybrid contribution -0.266 0.552 0.859 1.055 sum 6.972 -13.884 3.235 15.870 Atomic orbital electron populations 1.69942 1.06092 1.26843 1.50540 1.25018 0.94839 0.99287 0.95200 0.86654 0.79605 0.83096 0.78641 1.20172 1.21238 1.20236 1.21149 0.92948 0.90912 1.51014 0.92713 1.19053 0.93915 0.91229 0.97225 1.21803 0.99514 0.92497 1.01086 1.22575 0.92949 0.89984 1.01430 1.60363 1.28040 1.05444 1.26806 1.23297 0.99523 0.89613 0.95581 1.21918 0.96711 1.02067 0.94102 1.20907 0.97137 0.99091 0.91572 1.19551 0.95398 0.94205 0.89557 1.21216 0.92940 0.98177 0.95383 1.21017 1.00638 0.96784 0.93565 1.20953 0.93630 0.93827 1.01282 1.20479 1.02562 0.94291 0.92754 1.43679 0.99447 1.01055 1.00819 1.94512 1.63230 1.74724 1.06039 1.94504 1.21371 1.47202 1.74847 0.92859 0.96454 0.96794 0.93138 0.92180 0.89734 0.94241 0.88733 0.88997 0.88600 0.87931 0.83172 0.83037 0.82922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.33 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.44 16 10 C -0.11 -2.12 5.02 -26.73 -0.13 -2.25 16 11 C 0.05 0.86 4.75 -3.82 -0.02 0.84 16 12 N -0.49 -6.68 5.06 -169.01 -0.85 -7.53 16 13 C 0.05 0.50 7.00 -2.42 -0.02 0.48 16 14 C -0.11 -1.24 5.74 -26.61 -0.15 -1.40 16 15 C -0.08 -1.09 6.05 -104.04 -0.63 -1.72 16 16 C 0.11 1.50 5.28 -83.41 -0.44 1.06 16 17 C -0.06 -0.70 8.55 -39.27 -0.34 -1.03 16 18 C -0.10 -1.02 10.02 -39.68 -0.40 -1.42 16 19 C -0.08 -0.86 9.56 -39.53 -0.38 -1.24 16 20 C -0.02 -0.23 6.84 -80.05 -0.55 -0.78 16 21 N 0.03 0.48 4.45 33.91 0.15 0.63 16 22 O -0.17 -2.54 18.45 -29.46 -0.54 -3.09 16 23 O -0.16 -2.44 16.97 -29.46 -0.50 -2.94 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.93 5.58 -51.93 -0.29 0.64 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.27 7.84 -51.93 -0.41 0.86 16 30 H 0.04 0.65 8.06 -51.93 -0.42 0.23 16 31 H 0.09 0.88 7.60 -51.93 -0.39 0.49 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.10 1.07 7.37 -51.93 -0.38 0.69 16 35 H 0.15 1.76 7.18 -52.49 -0.38 1.38 16 36 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.15 1.41 7.61 -52.49 -0.40 1.01 16 LS Contribution 313.50 15.07 4.72 4.72 Total: -1.00 -30.76 313.50 -9.66 -40.41 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -4.75 Total: -2.63 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -3.60 Total: -20.05 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.03 Total: -32.50 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -1.04 Total: -6.03 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.76 -9.66 -40.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178946753.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.197 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds