Wall clock time and date at job start Mon Mar 30 2020 01:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99737 * 2 1 4 4 H 1.48498 * 109.46729 * 239.99862 * 3 2 1 5 5 H 1.48499 * 109.46804 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47270 * 119.99953 * 3 2 1 7 7 C 1.37876 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99970 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99962 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47018 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47038 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.47031 * 180.02562 * 11 10 9 13 13 C 1.47916 * 111.00166 * 190.00486 * 12 11 10 14 14 C 1.54599 * 102.62694 * 265.49414 * 13 12 11 15 15 C 1.51578 * 102.83971 * 334.45659 * 14 13 12 16 16 C 1.39007 * 107.94460 * 15.93824 * 15 14 13 17 17 C 1.39365 * 119.08854 * 180.76913 * 16 15 14 18 18 C 1.37947 * 120.19333 * 359.73187 * 17 16 15 19 19 C 1.38255 * 120.27020 * 0.02562 * 18 17 16 20 20 C 1.37870 * 131.56947 * 196.35895 * 15 14 13 21 21 N 1.48010 * 119.95895 * 359.25510 * 20 15 14 22 22 O 1.21796 * 119.99799 * 180.02562 * 21 20 15 23 23 O 1.21796 * 119.99760 * 0.02562 * 21 20 15 24 24 H 0.96996 * 120.00587 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47126 * 59.99700 * 9 7 2 26 26 H 1.09003 * 109.46989 * 299.99545 * 9 7 2 27 27 H 1.09001 * 109.47305 * 60.00522 * 10 9 7 28 28 H 1.08995 * 109.47459 * 300.00071 * 10 9 7 29 29 H 1.09001 * 109.46891 * 60.00842 * 11 10 9 30 30 H 1.08995 * 109.47347 * 300.00499 * 11 10 9 31 31 H 1.08997 * 110.77267 * 23.77152 * 13 12 11 32 32 H 1.08991 * 110.78038 * 147.20517 * 13 12 11 33 33 H 1.08998 * 110.74270 * 92.79618 * 14 13 12 34 34 H 1.08997 * 110.73819 * 216.12028 * 14 13 12 35 35 H 1.07995 * 119.89933 * 179.71094 * 17 16 15 36 36 H 1.08009 * 119.86650 * 179.97438 * 18 17 16 37 37 H 1.08001 * 120.06025 * 180.09919 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0005 11 6 1.4805 -4.9870 0.0012 12 7 2.4352 -6.1035 0.0018 13 6 1.7462 -7.3903 -0.2375 14 6 1.4938 -7.9103 1.1964 15 6 2.5890 -7.2347 1.9974 16 6 3.1007 -6.1942 1.2306 17 6 4.1408 -5.4219 1.7443 18 6 4.6478 -5.6876 2.9994 19 6 4.1285 -6.7216 3.7562 20 6 3.0975 -7.4942 3.2523 21 7 2.5398 -8.6011 4.0613 22 8 2.9881 -8.8308 5.1702 23 8 1.6326 -9.2823 3.6181 24 1 -0.4851 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6242 -2.5567 0.8904 27 1 2.8721 -3.6042 0.8906 28 1 2.8721 -3.6042 -0.8894 29 1 0.8537 -5.0451 -0.8887 30 1 0.8541 -5.0445 0.8913 31 1 0.8043 -7.2326 -0.7629 32 1 2.3884 -8.0760 -0.7900 33 1 0.5102 -7.6024 1.5512 34 1 1.5982 -8.9945 1.2378 35 1 4.5513 -4.6133 1.1579 36 1 5.4542 -5.0860 3.3922 37 1 4.5269 -6.9256 4.7391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178946753.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:41 Heat of formation + Delta-G solvation = 9.126351 kcal Electronic energy + Delta-G solvation = -20987.191626 eV Core-core repulsion = 17731.854600 eV Total energy + Delta-G solvation = -3255.337026 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.37195 -41.98919 -38.35596 -37.68474 -36.11431 -34.38459 -33.07379 -31.16539 -30.43487 -28.12317 -27.39534 -25.05544 -23.99291 -23.07839 -22.47061 -21.75166 -19.77827 -19.64043 -18.69340 -18.45633 -17.33610 -16.94007 -16.84237 -16.64065 -16.43706 -15.49684 -15.07570 -14.43349 -14.36376 -13.98233 -13.83937 -13.48365 -13.38631 -13.21352 -12.96147 -12.80288 -12.66893 -12.55622 -12.47754 -12.32672 -12.18999 -12.05163 -11.56157 -11.40359 -11.20308 -10.79354 -10.55147 -10.40135 -9.23748 -8.20240 -6.31168 -1.24135 -0.13514 0.29292 0.34163 1.41176 1.43431 1.51286 2.15901 2.39700 2.48171 3.13777 3.14796 3.40863 3.61677 3.85868 3.92040 3.95992 4.08020 4.09812 4.17790 4.32782 4.57629 4.60920 4.64844 4.78607 4.84232 4.88372 4.94823 4.99347 5.02945 5.13493 5.20160 5.40070 5.49841 5.70358 5.73565 5.84055 5.95016 6.24127 6.49794 6.85717 7.38542 8.91447 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024402 B = 0.004015 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.173270 B = 6972.055803 C = 7448.477820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.026 3.974 10 C -0.096 4.096 11 C 0.066 3.934 12 N -0.493 5.493 13 C 0.049 3.951 14 C -0.108 4.108 15 C -0.093 4.093 16 C 0.088 3.912 17 C -0.064 4.064 18 C -0.089 4.089 19 C -0.071 4.071 20 C -0.036 4.036 21 N 0.033 4.967 22 O -0.179 6.179 23 O -0.180 6.180 24 H 0.263 0.737 25 H -0.006 1.006 26 H -0.014 1.014 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.028 0.972 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.155 0.845 36 H 0.189 0.811 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.761 -15.016 3.402 17.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.578 4.578 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.134 4.134 11 C -0.059 4.059 12 N -0.210 5.210 13 C -0.077 4.077 14 C -0.146 4.146 15 C -0.097 4.097 16 C -0.010 4.010 17 C -0.083 4.083 18 C -0.108 4.108 19 C -0.091 4.091 20 C -0.120 4.120 21 N 0.547 4.453 22 O -0.392 6.392 23 O -0.393 6.393 24 H 0.072 0.928 25 H 0.012 0.988 26 H 0.005 0.995 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.046 0.954 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.128 0.872 35 H 0.172 0.828 36 H 0.206 0.794 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 9.177 -14.282 2.540 17.165 hybrid contribution -0.833 0.480 0.839 1.276 sum 8.344 -13.802 3.380 16.479 Atomic orbital electron populations 1.70084 1.07862 1.27804 1.51745 1.25959 0.95685 1.03324 0.94769 0.85541 0.78300 0.78209 0.79273 1.19067 1.21179 1.19059 1.21641 0.93634 0.92136 1.50425 0.91853 1.18950 0.94377 0.93077 0.94732 1.21532 0.98270 0.92167 1.01391 1.22285 0.92826 0.89536 1.01211 1.60328 1.27636 1.05790 1.27238 1.23431 1.00396 0.88413 0.95461 1.21942 0.96015 1.02414 0.94230 1.21100 0.97593 0.99288 0.91732 1.19743 0.96324 0.95060 0.89836 1.21499 0.92621 0.97998 0.96222 1.21419 1.00724 0.96238 0.92395 1.21331 0.92492 0.93157 1.02087 1.20747 1.03697 0.94530 0.92985 1.43896 0.99293 1.01271 1.00836 1.94491 1.63260 1.74986 1.06439 1.94493 1.21961 1.47901 1.74963 0.92844 0.98759 0.99515 0.92484 0.92064 0.89178 0.95351 0.87385 0.87290 0.89078 0.87184 0.82772 0.79379 0.80914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.96 42.87 29.54 68.60 2.03 44.90 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.54 -29.51 9.11 25.60 0.23 -29.28 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 9 C 0.03 1.32 4.97 29.85 0.15 1.47 16 10 C -0.10 -3.62 5.02 30.59 0.15 -3.46 16 11 C 0.07 2.06 4.75 86.30 0.41 2.47 16 12 N -0.49 -12.84 5.06 -688.64 -3.48 -16.32 16 13 C 0.05 0.98 7.00 86.65 0.61 1.58 16 14 C -0.11 -2.36 5.74 30.67 0.18 -2.18 16 15 C -0.09 -2.36 6.05 -19.49 -0.12 -2.48 16 16 C 0.09 2.26 5.28 38.29 0.20 2.46 16 17 C -0.06 -1.42 8.55 22.47 0.19 -1.22 16 18 C -0.09 -1.54 10.02 22.20 0.22 -1.32 16 19 C -0.07 -1.41 9.56 22.30 0.21 -1.20 16 20 C -0.04 -0.91 6.84 36.32 0.25 -0.66 16 21 N 0.03 0.93 4.45 -46.61 -0.21 0.72 16 22 O -0.18 -5.14 18.45 18.89 0.35 -4.80 16 23 O -0.18 -5.35 16.97 18.89 0.32 -5.03 16 24 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 25 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 26 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 27 H 0.06 2.06 5.58 -2.39 -0.01 2.04 16 28 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.09 2.67 7.84 -2.39 -0.02 2.65 16 30 H 0.03 0.93 8.06 -2.39 -0.02 0.91 16 31 H 0.11 1.85 7.60 -2.39 -0.02 1.83 16 32 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.11 2.21 7.37 -2.39 -0.02 2.19 16 35 H 0.15 3.28 7.18 -2.91 -0.02 3.26 16 36 H 0.19 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.17 2.69 7.61 -2.91 -0.02 2.66 16 Total: -1.00 -66.42 313.50 3.52 -62.90 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 1.08 Total: 6.54 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: 3.15 Total: -33.35 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -3.41 Total: -71.17 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.67 Total: -9.82 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -66.42 3.52 -62.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178946753.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.026 kcal (2) G-P(sol) polarization free energy of solvation -66.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds