Wall clock time and date at job start Mon Mar 30 2020 01:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00027 * 2 1 4 4 H 1.48496 * 109.47073 * 240.00245 * 3 2 1 5 5 H 1.48507 * 109.46942 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47175 * 120.00118 * 3 2 1 7 7 C 1.37874 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00317 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00134 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47450 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47228 * 179.97438 * 10 9 7 12 12 C 1.46901 * 111.00075 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47224 * 180.02562 * 12 11 10 14 14 C 1.32563 * 120.00113 * 125.00516 * 13 12 11 15 15 C 1.47820 * 120.00074 * 179.97438 * 14 13 12 16 16 C 1.39552 * 120.13956 * 344.27727 * 15 14 13 17 17 C 1.37955 * 119.85674 * 180.25280 * 16 15 14 18 18 C 1.38365 * 120.13474 * 359.74839 * 17 16 15 19 19 C 1.38324 * 120.29100 * 359.97438 * 18 17 16 20 20 C 1.37993 * 120.14154 * 0.02562 * 19 18 17 21 21 N 1.47999 * 120.07116 * 179.97438 * 20 19 18 22 22 O 1.21807 * 120.00205 * 142.37118 * 21 20 19 23 23 O 1.21800 * 120.00183 * 322.09830 * 21 20 19 24 24 H 0.97003 * 120.00212 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46879 * 59.99993 * 9 7 2 26 26 H 1.08993 * 109.47291 * 300.00532 * 9 7 2 27 27 H 1.09002 * 109.47170 * 60.00068 * 10 9 7 28 28 H 1.09009 * 109.46986 * 300.00145 * 10 9 7 29 29 H 1.00897 * 110.99959 * 303.95367 * 11 10 9 30 30 H 1.09000 * 109.46756 * 60.00018 * 12 11 10 31 31 H 1.09003 * 109.47535 * 300.00484 * 12 11 10 32 32 H 1.08001 * 119.99813 * 305.00061 * 13 12 11 33 33 H 1.08000 * 120.00001 * 0.02562 * 14 13 12 34 34 H 1.08000 * 120.07646 * 0.02562 * 16 15 14 35 35 H 1.07991 * 119.93156 * 179.72199 * 17 16 15 36 36 H 1.08009 * 119.85495 * 179.97438 * 18 17 16 37 37 H 1.07999 * 119.92847 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9343 0.0001 12 6 2.4353 -6.0759 -0.0005 13 6 1.6473 -7.3604 -0.0005 14 6 1.8617 -8.2696 -0.9411 15 6 1.0891 -9.5298 -0.9407 16 6 0.3839 -9.9191 0.1988 17 6 -0.3309 -11.0989 0.1945 18 6 -0.3538 -11.8931 -0.9383 19 6 0.3384 -11.5101 -2.0730 20 6 1.0572 -10.3322 -2.0816 21 7 1.7977 -9.9241 -3.2963 22 8 1.8432 -8.7497 -3.6161 23 8 2.3659 -10.7621 -3.9735 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8719 -3.6043 0.8895 28 1 2.8720 -3.6043 -0.8906 29 1 0.8746 -4.9841 0.7817 30 1 3.0638 -6.0348 0.8890 31 1 3.0627 -6.0350 -0.8909 32 1 0.9079 -7.5403 0.7659 33 1 2.6014 -8.0899 -1.7072 34 1 0.4006 -9.2998 1.0835 35 1 -0.8734 -11.4036 1.0772 36 1 -0.9146 -12.8162 -0.9366 37 1 0.3162 -12.1342 -2.9541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273098802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:37 Heat of formation + Delta-G solvation = 31.879674 kcal Electronic energy + Delta-G solvation = -19665.143605 eV Core-core repulsion = 16410.793237 eV Total energy + Delta-G solvation = -3254.350368 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.31978 -39.78718 -36.86414 -36.53679 -34.57857 -32.90178 -32.35386 -30.96070 -28.93549 -26.77764 -25.45732 -23.88685 -23.01023 -22.12882 -20.75927 -19.67349 -19.34622 -18.75555 -17.68631 -16.91923 -16.30296 -15.70778 -15.35112 -15.10280 -14.82628 -14.42996 -14.01322 -13.79220 -13.34590 -13.10613 -12.55768 -12.47413 -12.14220 -11.77067 -11.68971 -11.49804 -11.22184 -11.12517 -10.97547 -10.91548 -10.66318 -10.54949 -10.02540 -9.96436 -9.42358 -9.18977 -8.76089 -8.35118 -7.87573 -5.99809 -4.02659 -0.30449 0.34935 0.94448 1.24979 2.02647 3.05125 3.33989 3.38304 3.40788 3.92383 4.01381 4.24713 4.44022 4.49216 4.54549 4.69253 4.83562 4.93782 5.12393 5.24967 5.36167 5.44151 5.44722 5.49228 5.67407 5.78197 5.89610 6.27249 6.28762 6.29190 6.34445 6.44574 6.94535 7.38804 7.50409 7.69081 7.78253 7.90622 8.06639 8.42260 9.04276 9.61179 11.11619 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.028938 B = 0.002687 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.347984 B =10416.356602 C =10940.168447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.686 5.686 12 C 0.077 3.923 13 C -0.078 4.078 14 C -0.159 4.159 15 C 0.027 3.973 16 C -0.120 4.120 17 C -0.068 4.068 18 C -0.126 4.126 19 C -0.057 4.057 20 C -0.040 4.040 21 N 0.024 4.976 22 O -0.137 6.137 23 O -0.165 6.165 24 H 0.261 0.739 25 H 0.026 0.974 26 H 0.013 0.987 27 H 0.017 0.983 28 H 0.061 0.939 29 H 0.336 0.664 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.134 0.866 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.525 -26.299 1.738 26.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.063 4.063 11 N -0.317 5.317 12 C -0.052 4.052 13 C -0.096 4.096 14 C -0.178 4.178 15 C 0.026 3.974 16 C -0.138 4.138 17 C -0.086 4.086 18 C -0.145 4.145 19 C -0.076 4.076 20 C -0.122 4.122 21 N 0.546 4.454 22 O -0.357 6.357 23 O -0.380 6.380 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.032 0.968 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.154 0.846 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.134 0.866 33 H 0.152 0.848 34 H 0.165 0.835 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.111 -26.396 1.634 26.470 hybrid contribution 0.889 1.018 0.550 1.459 sum -0.222 -25.379 2.184 25.473 Atomic orbital electron populations 1.69957 1.06051 1.26748 1.50498 1.24999 0.94849 0.99235 0.95246 0.86638 0.79564 0.83053 0.78618 1.20151 1.21257 1.20306 1.21133 0.92971 0.90991 1.51115 0.92764 1.19065 0.94004 0.90344 0.97781 1.22211 0.97076 0.88113 0.98877 1.60654 1.19518 1.01761 1.49724 1.21106 0.94280 0.88453 1.01320 1.23522 0.96578 0.94101 0.95439 1.21703 1.02124 0.92764 1.01235 1.18921 0.94090 0.93347 0.91054 1.21420 0.97167 0.97512 0.97735 1.21511 0.95483 0.93124 0.98473 1.21192 1.00191 1.01117 0.91966 1.20894 0.93789 0.92635 1.00298 1.21095 1.04961 0.99557 0.86610 1.43585 0.99411 1.00796 1.01623 1.94611 1.65250 1.01781 1.74105 1.94534 1.44263 1.47585 1.51579 0.92904 0.95522 0.96830 0.96499 0.92043 0.84636 0.94012 0.90134 0.86643 0.84846 0.83454 0.83965 0.83751 0.83598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 10 C 0.07 1.36 5.62 -3.83 -0.02 1.34 16 11 N -0.69 -11.96 6.49 -115.06 -0.75 -12.70 16 12 C 0.08 1.07 6.13 -4.98 -0.03 1.04 16 13 C -0.08 -0.90 9.15 -36.22 -0.33 -1.23 16 14 C -0.16 -1.91 8.49 -37.57 -0.32 -2.23 16 15 C 0.03 0.29 5.83 -105.01 -0.61 -0.32 16 16 C -0.12 -0.91 9.34 -39.20 -0.37 -1.28 16 17 C -0.07 -0.38 10.03 -39.64 -0.40 -0.78 16 18 C -0.13 -0.72 10.04 -39.50 -0.40 -1.11 16 19 C -0.06 -0.47 9.66 -39.64 -0.38 -0.85 16 20 C -0.04 -0.45 6.51 -79.57 -0.52 -0.97 16 21 N 0.02 0.33 4.25 34.15 0.15 0.48 16 22 O -0.14 -2.12 16.58 -29.46 -0.49 -2.61 16 23 O -0.17 -2.32 18.96 -29.46 -0.56 -2.87 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 29 H 0.34 5.46 8.72 -39.29 -0.34 5.11 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 1.15 7.81 -51.93 -0.41 0.75 16 32 H 0.12 1.07 6.31 -52.49 -0.33 0.74 16 33 H 0.13 1.77 6.18 -52.49 -0.32 1.44 16 34 H 0.15 0.85 6.46 -52.49 -0.34 0.52 16 35 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 36 H 0.14 0.39 8.06 -52.48 -0.42 -0.03 16 37 H 0.15 0.98 8.02 -52.49 -0.42 0.56 16 LS Contribution 327.41 15.07 4.93 4.93 Total: -1.00 -32.76 327.41 -9.60 -42.35 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -4.66 Total: -0.48 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -3.93 Total: -19.52 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.13 Total: -38.53 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -1.05 Total: -5.49 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.76 -9.60 -42.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273098802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.231 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds