Wall clock time and date at job start Mon Mar 30 2020 01:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00027 * 2 1 4 4 H 1.48496 * 109.47073 * 240.00245 * 3 2 1 5 5 H 1.48507 * 109.46942 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47175 * 120.00118 * 3 2 1 7 7 C 1.37874 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00317 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00134 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47450 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47228 * 179.97438 * 10 9 7 12 12 C 1.46901 * 111.00075 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47224 * 180.02562 * 12 11 10 14 14 C 1.32563 * 120.00113 * 125.00516 * 13 12 11 15 15 C 1.47820 * 120.00074 * 179.97438 * 14 13 12 16 16 C 1.39552 * 120.13956 * 344.27727 * 15 14 13 17 17 C 1.37955 * 119.85674 * 180.25280 * 16 15 14 18 18 C 1.38365 * 120.13474 * 359.74839 * 17 16 15 19 19 C 1.38324 * 120.29100 * 359.97438 * 18 17 16 20 20 C 1.37993 * 120.14154 * 0.02562 * 19 18 17 21 21 N 1.47999 * 120.07116 * 179.97438 * 20 19 18 22 22 O 1.21807 * 120.00205 * 142.37118 * 21 20 19 23 23 O 1.21800 * 120.00183 * 322.09830 * 21 20 19 24 24 H 0.97003 * 120.00212 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46879 * 59.99993 * 9 7 2 26 26 H 1.08993 * 109.47291 * 300.00532 * 9 7 2 27 27 H 1.09002 * 109.47170 * 60.00068 * 10 9 7 28 28 H 1.09009 * 109.46986 * 300.00145 * 10 9 7 29 29 H 1.00897 * 110.99959 * 303.95367 * 11 10 9 30 30 H 1.09000 * 109.46756 * 60.00018 * 12 11 10 31 31 H 1.09003 * 109.47535 * 300.00484 * 12 11 10 32 32 H 1.08001 * 119.99813 * 305.00061 * 13 12 11 33 33 H 1.08000 * 120.00001 * 0.02562 * 14 13 12 34 34 H 1.08000 * 120.07646 * 0.02562 * 16 15 14 35 35 H 1.07991 * 119.93156 * 179.72199 * 17 16 15 36 36 H 1.08009 * 119.85495 * 179.97438 * 18 17 16 37 37 H 1.07999 * 119.92847 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9343 0.0001 12 6 2.4353 -6.0759 -0.0005 13 6 1.6473 -7.3604 -0.0005 14 6 1.8617 -8.2696 -0.9411 15 6 1.0891 -9.5298 -0.9407 16 6 0.3839 -9.9191 0.1988 17 6 -0.3309 -11.0989 0.1945 18 6 -0.3538 -11.8931 -0.9383 19 6 0.3384 -11.5101 -2.0730 20 6 1.0572 -10.3322 -2.0816 21 7 1.7977 -9.9241 -3.2963 22 8 1.8432 -8.7497 -3.6161 23 8 2.3659 -10.7621 -3.9735 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8719 -3.6043 0.8895 28 1 2.8720 -3.6043 -0.8906 29 1 0.8746 -4.9841 0.7817 30 1 3.0638 -6.0348 0.8890 31 1 3.0627 -6.0350 -0.8909 32 1 0.9079 -7.5403 0.7659 33 1 2.6014 -8.0899 -1.7072 34 1 0.4006 -9.2998 1.0835 35 1 -0.8734 -11.4036 1.0772 36 1 -0.9146 -12.8162 -0.9366 37 1 0.3162 -12.1342 -2.9541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273098802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:36 Heat of formation + Delta-G solvation = 11.929139 kcal Electronic energy + Delta-G solvation = -19666.008725 eV Core-core repulsion = 16410.793237 eV Total energy + Delta-G solvation = -3255.215488 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.29377 -40.45032 -38.07350 -37.67746 -35.86600 -34.71153 -33.04567 -32.20159 -30.39631 -27.80508 -26.81014 -25.21049 -24.02365 -22.99610 -22.54512 -20.65263 -20.17643 -19.75413 -18.65653 -18.51559 -17.52533 -16.91386 -16.45698 -16.26375 -15.80052 -15.50656 -15.39114 -14.86436 -14.41765 -14.22867 -14.01202 -13.71598 -13.32635 -13.07469 -12.84266 -12.77241 -12.57398 -12.49639 -12.38841 -12.28825 -12.00383 -11.94434 -11.47383 -11.41087 -11.22664 -10.56928 -10.56268 -9.62580 -9.21746 -8.20677 -6.32336 -1.17918 -0.29897 0.11493 0.39161 1.22588 1.40428 1.43885 1.51721 2.40088 2.42891 3.12771 3.15332 3.37532 3.54248 3.72666 3.91355 3.97585 4.02236 4.11439 4.34480 4.37532 4.48852 4.62438 4.67438 4.70013 4.78674 4.97876 5.05041 5.14137 5.15972 5.39126 5.43042 5.51582 5.56975 5.65783 5.76930 6.09199 6.23448 6.40328 6.52447 6.84706 7.36954 8.91344 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.028938 B = 0.002687 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.347984 B =10416.356602 C =10940.168447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.032 3.968 10 C 0.083 3.917 11 N -0.695 5.695 12 C 0.080 3.920 13 C -0.081 4.081 14 C -0.160 4.160 15 C 0.001 3.999 16 C -0.119 4.119 17 C -0.053 4.053 18 C -0.110 4.110 19 C -0.065 4.065 20 C -0.066 4.066 21 N 0.027 4.973 22 O -0.195 6.195 23 O -0.163 6.163 24 H 0.264 0.736 25 H -0.008 1.008 26 H -0.004 1.004 27 H 0.026 0.974 28 H 0.054 0.946 29 H 0.345 0.655 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.144 0.856 33 H 0.109 0.891 34 H 0.168 0.832 35 H 0.185 0.815 36 H 0.185 0.815 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.058 -28.210 3.683 28.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.586 4.586 8 H 0.079 0.921 9 C -0.006 4.006 10 C -0.046 4.046 11 N -0.327 5.327 12 C -0.049 4.049 13 C -0.099 4.099 14 C -0.180 4.180 15 C 0.000 4.000 16 C -0.137 4.137 17 C -0.070 4.070 18 C -0.128 4.128 19 C -0.084 4.084 20 C -0.149 4.149 21 N 0.543 4.457 22 O -0.404 6.404 23 O -0.382 6.382 24 H 0.073 0.927 25 H 0.010 0.990 26 H 0.014 0.986 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.163 0.837 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.162 0.838 33 H 0.127 0.873 34 H 0.185 0.815 35 H 0.202 0.798 36 H 0.202 0.798 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.641 -28.243 3.574 28.515 hybrid contribution 0.973 1.370 -0.018 1.681 sum -0.668 -26.872 3.556 27.115 Atomic orbital electron populations 1.70094 1.07823 1.27918 1.51303 1.25978 0.95786 1.03395 0.94574 0.85475 0.78257 0.77946 0.79207 1.19336 1.20738 1.18942 1.21597 0.93581 0.92288 1.51124 0.92113 1.18914 0.94306 0.92195 0.95157 1.21805 0.95679 0.88129 0.98967 1.60495 1.20274 1.01433 1.50494 1.21088 0.94104 0.88175 1.01498 1.23423 0.97268 0.92698 0.96496 1.21657 1.01856 0.94097 1.00359 1.19019 0.95671 0.93001 0.92309 1.21766 0.96326 0.98621 0.97030 1.22053 0.93768 0.91529 0.99676 1.21728 0.98467 1.02031 0.90555 1.21252 0.93607 0.91530 1.01998 1.21409 1.06595 1.01434 0.85443 1.44053 0.99056 1.00271 1.02297 1.94604 1.67452 1.02717 1.75628 1.94478 1.44052 1.47293 1.52414 0.92689 0.98980 0.98585 0.95564 0.92704 0.83727 0.92360 0.91431 0.83819 0.87325 0.81481 0.79809 0.79801 0.82548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.40 13.29 21.44 0.28 -57.12 16 2 C 0.00 0.04 5.46 84.66 0.46 0.51 16 3 Si 0.97 44.65 29.54 68.60 2.03 46.67 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.55 -31.67 9.11 25.60 0.23 -31.44 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.71 5.23 29.85 0.16 1.87 16 10 C 0.08 3.52 5.62 86.30 0.49 4.00 16 11 N -0.70 -24.48 6.49 -517.93 -3.36 -27.84 16 12 C 0.08 2.20 6.13 85.56 0.52 2.73 16 13 C -0.08 -1.82 9.15 24.53 0.22 -1.59 16 14 C -0.16 -3.96 8.49 23.66 0.20 -3.76 16 15 C 0.00 0.03 5.83 -20.12 -0.12 -0.09 16 16 C -0.12 -1.44 9.34 22.52 0.21 -1.23 16 17 C -0.05 -0.33 10.03 22.23 0.22 -0.10 16 18 C -0.11 -0.75 10.04 22.32 0.22 -0.53 16 19 C -0.06 -0.92 9.66 22.23 0.21 -0.71 16 20 C -0.07 -1.48 6.51 36.63 0.24 -1.24 16 21 N 0.03 0.80 4.25 -45.88 -0.20 0.60 16 22 O -0.19 -6.65 16.58 18.88 0.31 -6.33 16 23 O -0.16 -4.75 18.96 18.89 0.36 -4.39 16 24 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 25 H -0.01 -0.50 8.14 -2.39 -0.02 -0.51 16 26 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.05 2.38 8.14 -2.38 -0.02 2.36 16 29 H 0.34 11.11 8.72 -89.70 -0.78 10.32 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 2.02 7.81 -2.39 -0.02 2.01 16 32 H 0.14 2.35 6.31 -2.91 -0.02 2.33 16 33 H 0.11 3.18 6.18 -2.91 -0.02 3.16 16 34 H 0.17 1.28 6.46 -2.91 -0.02 1.27 16 35 H 0.18 -0.30 8.06 -2.92 -0.02 -0.33 16 36 H 0.18 -0.14 8.06 -2.91 -0.02 -0.16 16 37 H 0.16 1.81 8.02 -2.91 -0.02 1.79 16 Total: -1.00 -74.92 327.41 3.01 -71.91 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.30 Total: 8.08 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: 3.28 Total: -31.58 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -3.27 Total: -84.36 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.67 Total: -10.72 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -74.92 3.01 -71.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273098802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.836 kcal (2) G-P(sol) polarization free energy of solvation -74.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds