Wall clock time and date at job start Mon Mar 30 2020 01:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99936 * 2 1 4 4 H 1.48504 * 109.47361 * 240.00302 * 3 2 1 5 5 H 1.48500 * 109.47162 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47283 * 120.00276 * 3 2 1 7 7 C 1.37876 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00271 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47371 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47205 * 180.02562 * 10 9 7 12 12 C 1.34771 * 120.00030 * 180.02562 * 11 10 9 13 13 O 1.21601 * 119.99950 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00247 * 179.97438 * 12 11 10 15 15 C 1.40150 * 120.00213 * 185.30864 * 14 12 11 16 16 C 1.38855 * 120.18721 * 33.13252 * 15 14 12 17 17 C 1.37870 * 120.27351 * 180.19966 * 16 15 14 18 18 C 1.39295 * 120.33941 * 0.02562 * 17 16 15 19 19 C 1.38973 * 118.96936 * 359.61989 * 18 17 16 20 20 C 1.37628 * 120.84306 * 0.56152 * 19 18 17 21 21 C 1.51661 * 106.99058 * 180.56186 * 19 18 17 22 22 C 1.54706 * 101.94774 * 15.71894 * 21 19 18 23 23 O 1.36228 * 129.79015 * 179.56942 * 18 17 16 24 24 H 0.97004 * 120.00053 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47160 * 59.99464 * 9 7 2 26 26 H 1.08999 * 109.46477 * 300.00040 * 9 7 2 27 27 H 1.08991 * 109.47263 * 59.99311 * 10 9 7 28 28 H 1.09000 * 109.46759 * 299.99551 * 10 9 7 29 29 H 0.96994 * 120.00112 * 359.97438 * 11 10 9 30 30 H 0.96995 * 119.99759 * 5.30870 * 14 12 11 31 31 H 1.07999 * 119.86600 * 0.17405 * 16 15 14 32 32 H 1.08005 * 119.83210 * 179.97438 * 17 16 15 33 33 H 1.07993 * 120.01275 * 179.64685 * 20 19 18 34 34 H 1.08994 * 110.93982 * 257.54453 * 21 19 18 35 35 H 1.08998 * 110.94305 * 133.89058 * 21 19 18 36 36 H 1.09000 * 110.74936 * 92.92775 * 22 21 19 37 37 H 1.09001 * 110.74373 * 216.08554 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5127 -4.9308 -0.0032 12 6 2.1865 -6.0979 -0.0028 13 8 3.4025 -6.0979 -0.0014 14 7 1.5127 -7.2652 -0.0039 15 6 2.2088 -8.4764 0.1088 16 6 3.3708 -8.5460 0.8658 17 6 4.0592 -9.7355 0.9745 18 6 3.5964 -10.8782 0.3261 19 6 2.4284 -10.8005 -0.4231 20 6 1.7407 -9.6138 -0.5368 21 6 2.1723 -12.1839 -0.9893 22 6 3.1035 -13.0628 -0.1211 23 8 4.1201 -12.1354 0.2948 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6240 -2.5574 0.8880 27 1 2.8712 -3.6047 0.8889 28 1 2.8725 -3.6039 -0.8910 29 1 0.5428 -4.9308 -0.0039 30 1 0.5459 -7.2670 -0.0827 31 1 3.7371 -7.6646 1.3711 32 1 4.9625 -9.7815 1.5648 33 1 0.8376 -9.5673 -1.1271 34 1 2.4577 -12.2337 -2.0400 35 1 1.1295 -12.4722 -0.8567 36 1 2.5670 -13.4597 0.7407 37 1 3.5331 -13.8714 -0.7125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273221998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:11 Heat of formation + Delta-G solvation = -39.208731 kcal Electronic energy + Delta-G solvation = -20007.760108 eV Core-core repulsion = 16750.327116 eV Total energy + Delta-G solvation = -3257.432992 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.25987 -40.04316 -37.55500 -34.95573 -34.20645 -32.91101 -32.76346 -29.99521 -29.43081 -28.40879 -24.84089 -23.68016 -22.48823 -22.19108 -20.95809 -20.41885 -18.34571 -17.60331 -17.26345 -16.58509 -16.33658 -16.09553 -15.24188 -14.68377 -14.53800 -14.22643 -13.78729 -13.68345 -13.43362 -13.36205 -12.97488 -12.85801 -12.63068 -12.29247 -11.99733 -11.44829 -11.23393 -11.03952 -10.91536 -10.67098 -10.36832 -10.05491 -9.79426 -9.59958 -9.31154 -8.97848 -8.60315 -8.39673 -7.66491 -6.11209 -4.14126 1.21159 1.23374 2.80095 3.12852 3.30561 3.31434 3.34433 3.38069 3.75129 4.17608 4.32668 4.38823 4.52142 4.66547 4.75866 5.03636 5.13512 5.25996 5.27117 5.38602 5.43323 5.57389 5.77130 5.84533 6.14521 6.23825 6.32379 6.33795 6.42307 6.70244 6.73239 6.86679 7.09277 7.13142 7.51798 7.58979 7.87249 8.17237 8.29722 8.79098 8.91899 9.50791 11.00382 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.062282 B = 0.002611 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.461008 B =10719.926112 C =11042.195313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.732 5.732 12 C 0.697 3.303 13 O -0.580 6.580 14 N -0.690 5.690 15 C 0.152 3.848 16 C -0.085 4.085 17 C -0.115 4.115 18 C 0.079 3.921 19 C -0.158 4.158 20 C -0.103 4.103 21 C -0.108 4.108 22 C 0.052 3.948 23 O -0.307 6.307 24 H 0.263 0.737 25 H 0.022 0.978 26 H 0.023 0.977 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.395 0.605 30 H 0.405 0.595 31 H 0.147 0.853 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.124 -24.708 -0.177 24.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.016 3.984 11 N -0.385 5.385 12 C 0.397 3.603 13 O -0.457 6.457 14 N -0.338 5.338 15 C 0.057 3.943 16 C -0.106 4.106 17 C -0.134 4.134 18 C 0.034 3.966 19 C -0.159 4.159 20 C -0.124 4.124 21 C -0.145 4.145 22 C -0.023 4.023 23 O -0.222 6.222 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.229 0.771 30 H 0.240 0.760 31 H 0.165 0.835 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.299 -24.528 -0.114 24.563 hybrid contribution -0.776 0.927 -0.214 1.228 sum 0.523 -23.600 -0.328 23.609 Atomic orbital electron populations 1.69943 1.06099 1.27021 1.50272 1.24994 0.94906 0.99434 0.94948 0.86557 0.79503 0.82571 0.78815 1.20085 1.21256 1.20081 1.21001 0.93250 0.90310 1.51522 0.92226 1.19327 0.94233 0.91011 0.97874 1.21670 0.95728 0.80072 1.00920 1.45573 1.10063 1.05174 1.77651 1.16057 0.85732 0.80313 0.78199 1.90917 1.11433 1.86176 1.57200 1.42668 1.09997 1.03444 1.77741 1.17258 0.94743 0.84691 0.97626 1.20995 0.94628 0.97504 0.97469 1.20148 1.01971 0.89765 1.01515 1.19523 0.93521 0.86323 0.97277 1.20412 0.97990 0.95650 1.01851 1.19869 1.01464 0.90710 1.00362 1.21763 1.01316 0.90887 1.00525 1.23777 0.88338 0.92171 0.98016 1.86826 1.35750 1.14494 1.85094 0.92772 0.95928 0.95904 0.92475 0.92529 0.77138 0.75971 0.83499 0.85169 0.85532 0.89190 0.89157 0.90719 0.87828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 10 C 0.14 2.89 5.61 -4.05 -0.02 2.87 16 11 N -0.73 -12.41 5.56 -65.23 -0.36 -12.77 16 12 C 0.70 11.86 8.31 -86.92 -0.72 11.13 16 13 O -0.58 -11.99 14.03 5.28 0.07 -11.91 16 14 N -0.69 -8.92 5.36 -14.16 -0.08 -9.00 16 15 C 0.15 2.02 6.29 -83.58 -0.53 1.50 16 16 C -0.09 -1.22 8.64 -39.49 -0.34 -1.56 16 17 C -0.11 -1.48 10.06 -39.32 -0.40 -1.87 16 18 C 0.08 0.98 7.04 -38.92 -0.27 0.70 16 19 C -0.16 -1.72 6.27 -104.10 -0.65 -2.37 16 20 C -0.10 -1.14 9.95 -39.55 -0.39 -1.53 16 21 C -0.11 -0.79 7.11 -26.51 -0.19 -0.98 16 22 C 0.05 0.38 8.01 38.06 0.30 0.68 16 23 O -0.31 -3.54 11.10 -20.47 -0.23 -3.76 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.40 5.64 8.49 -40.82 -0.35 5.29 16 30 H 0.41 3.81 8.84 -40.82 -0.36 3.45 16 31 H 0.15 2.31 6.41 -52.49 -0.34 1.98 16 32 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 318.18 15.07 4.79 4.79 Total: -1.00 -32.88 318.18 -8.66 -41.54 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.81 Total: 4.39 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -3.76 Total: -4.35 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.30 Total: -46.93 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.15 Total: -15.68 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.88 -8.66 -41.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273221998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.331 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds