Wall clock time and date at job start Mon Mar 30 2020 01:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00162 * 2 1 4 4 H 1.48504 * 109.46955 * 269.99963 * 3 2 1 5 5 H 1.48499 * 109.47029 * 30.00037 * 3 2 1 6 6 H 1.48497 * 109.47271 * 150.00396 * 3 2 1 7 7 C 1.37883 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00229 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99735 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47362 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34783 * 119.99609 * 180.02562 * 11 10 9 13 13 O 1.21582 * 120.00004 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99365 * 179.97438 * 12 11 10 15 15 C 1.46926 * 121.49239 * 179.97438 * 14 12 11 16 16 C 1.50912 * 108.94657 * 221.85706 * 15 14 12 17 17 C 1.38642 * 118.39858 * 168.72641 * 16 15 14 18 18 C 1.38046 * 120.34430 * 179.62513 * 17 16 15 19 19 C 1.38255 * 119.75984 * 359.95887 * 18 17 16 20 20 C 1.37976 * 119.90811 * 0.18550 * 19 18 17 21 21 C 1.37816 * 121.60890 * 348.66244 * 16 15 14 22 22 C 1.50607 * 122.32797 * 0.84012 * 21 16 15 23 23 O 1.42423 * 121.50120 * 359.71111 * 14 12 11 24 24 H 0.96999 * 119.99976 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47077 * 60.00033 * 9 7 2 26 26 H 1.09001 * 109.47193 * 300.00359 * 9 7 2 27 27 H 1.09001 * 109.46958 * 60.00009 * 10 9 7 28 28 H 1.08999 * 109.46796 * 300.00438 * 10 9 7 29 29 H 0.96993 * 120.00048 * 359.97438 * 11 10 9 30 30 H 1.09004 * 109.55491 * 341.69418 * 15 14 12 31 31 H 1.09000 * 109.55805 * 101.90560 * 15 14 12 32 32 H 1.08001 * 119.82681 * 359.63045 * 17 16 15 33 33 H 1.07997 * 120.11955 * 179.97438 * 18 17 16 34 34 H 1.08006 * 120.04413 * 180.20093 * 19 18 17 35 35 H 1.08009 * 119.77008 * 180.02562 * 20 19 18 36 36 H 1.08997 * 109.20572 * 102.18682 * 22 21 16 37 37 H 1.09003 * 109.19715 * 221.52465 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 7 1.5127 -4.9308 -0.0024 12 6 2.1867 -6.0980 -0.0031 13 8 3.4025 -6.0980 -0.0036 14 7 1.5127 -7.2652 -0.0031 15 6 2.2138 -8.5564 -0.0044 16 6 1.5126 -9.4938 -0.9567 17 6 2.1401 -10.6836 -1.2924 18 6 1.5315 -11.5742 -2.1540 19 6 0.2893 -11.2770 -2.6833 20 6 -0.3341 -10.0916 -2.3517 21 6 0.2776 -9.1922 -1.4889 22 6 -0.4433 -7.9080 -1.1738 23 8 0.0889 -7.3024 0.0036 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8726 -3.6048 0.8877 28 1 2.8712 -3.6039 -0.8922 29 1 0.5428 -4.9308 -0.0016 30 1 3.2446 -8.4115 -0.3278 31 1 2.2026 -8.9787 1.0004 32 1 3.1101 -10.9150 -0.8777 33 1 2.0238 -12.4998 -2.4133 34 1 -0.1925 -11.9719 -3.3552 35 1 -1.3046 -9.8618 -2.7661 36 1 -0.3330 -7.2199 -2.0119 37 1 -1.5016 -8.1194 -1.0205 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288278338.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:55 Heat of formation + Delta-G solvation = 0.130399 kcal Electronic energy + Delta-G solvation = -20580.926235 eV Core-core repulsion = 17325.199115 eV Total energy + Delta-G solvation = -3255.727120 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.52050 -39.21754 -37.32365 -35.02635 -33.68448 -32.87514 -32.13757 -31.18226 -29.48520 -26.58072 -25.93233 -24.40009 -22.68486 -21.61993 -20.81145 -19.84413 -18.63499 -17.27086 -16.57511 -16.40408 -16.19502 -15.20826 -15.10398 -14.92348 -14.56996 -14.34409 -14.24060 -13.92967 -13.55744 -13.51903 -13.10335 -12.48461 -12.42700 -12.26999 -11.81261 -11.38241 -11.17668 -11.02215 -10.78503 -10.62137 -10.31697 -10.04439 -9.55632 -9.25343 -9.23600 -8.97932 -8.90151 -8.46841 -8.25297 -6.06924 -4.09672 0.97271 1.02403 1.81592 3.31225 3.34378 3.37189 3.37423 3.41616 3.63582 4.27774 4.38358 4.43290 4.56973 4.66182 4.84584 4.98994 5.11486 5.19700 5.28367 5.30102 5.37394 5.40832 5.64757 5.65060 6.04007 6.09147 6.16959 6.27579 6.39260 6.54654 6.62464 6.77415 6.95895 7.05815 7.57539 7.65672 7.91913 8.22496 8.33644 8.79843 8.96622 9.54874 11.04758 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.039803 B = 0.003184 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.299017 B = 8792.324079 C = 9195.141632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.137 3.863 11 N -0.726 5.726 12 C 0.721 3.279 13 O -0.579 6.579 14 N -0.502 5.502 15 C 0.169 3.831 16 C -0.089 4.089 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.111 4.111 21 C -0.106 4.106 22 C 0.069 3.931 23 O -0.137 6.137 24 H 0.262 0.738 25 H 0.022 0.978 26 H 0.024 0.976 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.401 0.599 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.076 0.924 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.768 -23.547 -4.019 23.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.015 3.985 11 N -0.379 5.379 12 C 0.424 3.576 13 O -0.458 6.458 14 N -0.287 5.287 15 C 0.048 3.952 16 C -0.090 4.090 17 C -0.128 4.128 18 C -0.134 4.134 19 C -0.138 4.138 20 C -0.129 4.129 21 C -0.107 4.107 22 C -0.009 4.009 23 O -0.140 6.140 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.235 0.765 30 H 0.134 0.866 31 H 0.104 0.896 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.094 0.906 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.122 -23.242 -3.843 23.585 hybrid contribution -0.350 0.700 -0.321 0.846 sum -1.472 -22.542 -4.164 22.971 Atomic orbital electron populations 1.69959 1.06092 1.26842 1.50400 1.24999 0.94891 0.99397 0.95022 0.86507 0.79846 0.82999 0.78167 1.20588 1.21187 1.19707 1.21048 0.93266 0.90316 1.51307 0.92182 1.19325 0.94236 0.90940 0.97942 1.21686 0.95764 0.80273 1.00806 1.45533 1.10609 1.04809 1.76904 1.15717 0.84592 0.79366 0.77960 1.90942 1.10484 1.84568 1.59798 1.49393 0.93069 1.05403 1.80845 1.20602 0.96200 0.79985 0.98456 1.19776 0.94610 0.96108 0.98463 1.21000 1.00121 0.93348 0.98365 1.21123 0.95514 0.99445 0.97330 1.21093 0.95599 0.96993 1.00081 1.21030 1.00115 0.94001 0.97777 1.19917 0.95137 0.96866 0.98772 1.21942 0.97734 0.91221 0.89966 1.90768 1.02588 1.82094 1.38538 0.92862 0.95961 0.95814 0.92486 0.92612 0.76498 0.86622 0.89589 0.85357 0.85666 0.85777 0.85662 0.90579 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.02 5.61 -4.04 -0.02 3.00 16 11 N -0.73 -13.95 5.54 -65.23 -0.36 -14.31 16 12 C 0.72 13.60 8.49 -86.91 -0.74 12.86 16 13 O -0.58 -12.44 15.92 5.29 0.08 -12.36 16 14 N -0.50 -7.73 3.51 -66.00 -0.23 -7.96 16 15 C 0.17 2.11 6.44 -4.86 -0.03 2.07 16 16 C -0.09 -0.99 5.85 -104.52 -0.61 -1.60 16 17 C -0.11 -1.00 9.65 -39.50 -0.38 -1.38 16 18 C -0.12 -0.92 10.05 -39.65 -0.40 -1.32 16 19 C -0.12 -0.95 10.04 -39.67 -0.40 -1.34 16 20 C -0.11 -0.97 9.63 -39.46 -0.38 -1.35 16 21 C -0.11 -1.14 5.84 -104.60 -0.61 -1.75 16 22 C 0.07 0.74 6.92 35.96 0.25 0.99 16 23 O -0.14 -1.90 10.80 -11.87 -0.13 -2.03 16 24 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.40 7.12 7.69 -40.82 -0.31 6.80 16 30 H 0.12 1.47 7.25 -51.93 -0.38 1.09 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 35 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.12 0.95 8.13 -51.93 -0.42 0.53 16 LS Contribution 318.29 15.07 4.80 4.80 Total: -1.00 -32.69 318.29 -8.88 -41.57 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.88 Total: 2.39 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -3.88 Total: -2.98 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.14 Total: -47.89 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.04 Total: -14.39 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.69 -8.88 -41.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288278338.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.704 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds