Wall clock time and date at job start Mon Mar 30 2020 02:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 119.99643 * 2 1 4 4 H 1.48496 * 109.47349 * 275.30508 * 3 2 1 5 5 H 1.48503 * 109.47245 * 35.30698 * 3 2 1 6 6 H 1.48502 * 109.47099 * 155.30381 * 3 2 1 7 7 C 1.39926 * 120.00425 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99665 * 346.71743 * 7 2 1 9 9 C 1.41410 * 120.00193 * 166.71473 * 7 2 1 10 10 C 1.40774 * 120.21183 * 331.38576 * 9 7 2 11 11 C 1.37641 * 119.88888 * 179.97438 * 10 9 7 12 12 C 1.38531 * 120.31835 * 0.02825 * 11 10 9 13 13 C 1.39249 * 120.42949 * 359.97438 * 12 11 10 14 14 N 1.39932 * 119.94463 * 179.97438 * 13 12 11 15 15 C 1.34784 * 120.00051 * 146.75388 * 14 13 12 16 16 O 1.21285 * 119.99321 * 355.09017 * 15 14 13 17 17 C 1.50695 * 120.00248 * 174.81286 * 15 14 13 18 18 H 1.08998 * 109.87774 * 40.69696 * 17 15 14 19 19 C 1.54317 * 109.88810 * 279.49922 * 17 15 14 20 20 C 1.55139 * 103.01944 * 218.30857 * 19 17 15 21 21 H 1.09001 * 110.99159 * 277.56346 * 20 19 17 22 22 O 1.42899 * 110.99227 * 153.74560 * 20 19 17 23 23 C 1.54905 * 101.65150 * 35.65458 * 20 19 17 24 24 N 1.47446 * 109.88964 * 161.72963 * 17 15 14 25 25 C 1.38276 * 120.10703 * 0.24398 * 13 12 11 26 26 H 0.97000 * 120.00173 * 359.97438 * 1 2 3 27 27 H 1.08008 * 120.05500 * 359.97438 * 10 9 7 28 28 H 1.07998 * 119.83694 * 179.97438 * 11 10 9 29 29 H 1.08001 * 119.78361 * 179.97438 * 12 11 10 30 30 H 0.97004 * 120.00403 * 326.75437 * 14 13 12 31 31 H 1.08999 * 110.70816 * 336.69546 * 19 17 15 32 32 H 1.09003 * 110.70424 * 99.93181 * 19 17 15 33 33 H 0.96700 * 114.00533 * 186.28055 * 22 20 19 34 34 H 1.09003 * 110.37292 * 204.09881 * 23 20 19 35 35 H 1.09008 * 110.46727 * 81.80826 * 23 20 19 36 36 H 1.00898 * 110.99478 * 356.15253 * 24 17 15 37 37 H 1.08000 * 120.16157 * 179.72391 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3775 2.1112 -1.3940 5 1 1.5001 2.6177 0.8092 6 1 3.5913 1.4105 0.5850 7 6 2.0080 -1.2117 -0.0005 8 1 1.4896 -2.1347 0.2139 9 6 3.3937 -1.2279 -0.2820 10 6 3.9595 -0.2419 -1.1122 11 6 5.3092 -0.2637 -1.3813 12 6 6.1144 -1.2521 -0.8394 13 6 5.5687 -2.2340 -0.0165 14 7 6.3914 -3.2280 0.5251 15 6 6.1240 -3.7330 1.7458 16 8 5.2250 -3.2649 2.4119 17 6 6.9378 -4.8832 2.2802 18 1 7.9893 -4.7405 2.0311 19 6 6.4280 -6.2104 1.6803 20 6 6.5358 -7.1971 2.8726 21 1 7.5509 -7.5819 2.9705 22 8 5.5963 -8.2656 2.7394 23 6 6.1709 -6.2833 4.0689 24 7 6.7767 -4.9747 3.7430 25 6 4.2142 -2.2316 0.2619 26 1 -0.4850 0.8400 0.0004 27 1 3.3355 0.5304 -1.5374 28 1 5.7423 0.4929 -2.0187 29 1 7.1723 -1.2613 -1.0566 30 1 7.1542 -3.5536 0.0220 31 1 5.3928 -6.1130 1.3530 32 1 7.0654 -6.5308 0.8561 33 1 5.5589 -8.8543 3.5056 34 1 6.5955 -6.6786 4.9918 35 1 5.0888 -6.1884 4.1600 36 1 6.2098 -4.2167 4.0924 37 1 3.7893 -2.9953 0.8964 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313409734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:18 Heat of formation + Delta-G solvation = -57.158342 kcal Electronic energy + Delta-G solvation = -21012.995911 eV Core-core repulsion = 17754.784565 eV Total energy + Delta-G solvation = -3258.211346 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.47770 -38.64295 -37.36720 -35.55401 -34.58721 -33.23477 -30.43930 -30.14709 -29.25201 -28.00951 -25.24645 -23.35519 -21.39763 -21.32750 -20.89165 -19.79521 -18.17454 -17.74383 -16.84219 -16.44667 -16.00999 -15.35286 -15.14202 -14.84641 -14.57403 -13.93046 -13.65561 -13.45827 -13.12469 -12.96072 -12.75155 -12.51522 -12.21286 -12.01373 -11.80693 -11.65205 -11.17606 -11.04600 -10.74676 -10.70674 -10.31945 -10.04501 -9.84022 -9.62139 -9.21576 -9.10124 -8.71472 -7.69523 -7.17366 -6.91821 -4.48882 2.26597 2.61019 2.96969 3.12585 3.24823 3.34708 3.36539 3.70194 4.01115 4.30119 4.37331 4.40628 4.51508 4.76766 4.85528 5.09643 5.19690 5.43574 5.49924 5.57944 5.66683 5.83605 5.95182 6.16002 6.34727 6.47595 6.56084 6.72163 6.78244 7.09240 7.16696 7.25335 7.34434 7.48106 7.57983 7.87203 7.94051 8.01070 8.35007 8.49102 8.64639 8.80967 10.10601 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.004489 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.127429 B = 6235.408788 C = 6773.596122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.082 3.918 3 Si 0.916 3.084 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.240 1.240 7 C -0.437 4.437 8 H 0.090 0.910 9 C 0.102 3.898 10 C -0.248 4.248 11 C -0.063 4.063 12 C -0.265 4.265 13 C 0.161 3.839 14 N -0.663 5.663 15 C 0.492 3.508 16 O -0.513 6.513 17 C 0.061 3.939 18 H 0.109 0.891 19 C -0.125 4.125 20 C 0.096 3.904 21 H 0.077 0.923 22 O -0.559 6.559 23 C 0.011 3.989 24 N -0.660 5.660 25 C -0.198 4.198 26 H 0.285 0.715 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.402 0.598 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.381 0.619 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.360 0.640 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.780 -10.470 3.862 17.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.137 4.137 3 Si 0.744 3.256 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.164 1.164 7 C -0.466 4.466 8 H 0.108 0.892 9 C 0.098 3.902 10 C -0.267 4.267 11 C -0.082 4.082 12 C -0.286 4.286 13 C 0.069 3.931 14 N -0.306 5.306 15 C 0.277 3.723 16 O -0.387 6.387 17 C -0.052 4.052 18 H 0.127 0.873 19 C -0.163 4.163 20 C 0.036 3.964 21 H 0.095 0.905 22 O -0.364 6.364 23 C -0.119 4.119 24 N -0.296 5.296 25 C -0.219 4.219 26 H 0.096 0.904 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.236 0.764 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.228 0.772 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.182 0.818 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.397 -9.982 3.962 17.170 hybrid contribution -0.208 0.578 -0.051 0.616 sum 13.189 -9.405 3.911 16.664 Atomic orbital electron populations 1.69658 1.08038 1.30244 1.35587 1.26175 0.94836 1.01790 0.90877 0.86255 0.81363 0.79427 0.78558 1.19836 1.22167 1.16368 1.19507 0.91487 0.95690 1.39917 0.89217 1.17605 0.93199 0.90545 0.88814 1.20964 0.95049 1.04096 1.06591 1.20349 0.93589 0.96452 0.97836 1.20036 0.97950 1.00022 1.10570 1.17511 0.89826 0.89259 0.96506 1.43449 1.30558 1.38946 1.17675 1.21095 0.85188 0.84398 0.81656 1.90770 1.30934 1.59719 1.57276 1.22309 1.00379 0.92914 0.89645 0.87333 1.22691 1.03801 0.91961 0.97868 1.22915 0.92256 0.86933 0.94282 0.90539 1.86535 1.62725 1.41853 1.45268 1.23591 0.99015 0.90370 0.98946 1.62167 1.53407 1.05382 1.08606 1.20917 0.90571 1.04197 1.06216 0.90425 0.88359 0.88410 0.88575 0.76361 0.89518 0.89196 0.77177 0.89763 0.92401 0.81809 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.28 13.93 55.55 0.77 -21.51 16 2 C 0.08 2.22 5.47 -17.35 -0.09 2.12 16 3 Si 0.92 21.60 24.37 -169.99 -4.14 17.46 16 4 H -0.27 -6.12 6.77 56.52 0.38 -5.74 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.24 -5.86 6.48 56.52 0.37 -5.49 16 7 C -0.44 -12.38 9.61 -37.74 -0.36 -12.74 16 8 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 9 C 0.10 2.70 5.19 -106.85 -0.55 2.15 16 10 C -0.25 -6.08 6.91 -38.84 -0.27 -6.34 16 11 C -0.06 -1.37 10.02 -39.69 -0.40 -1.77 16 12 C -0.26 -5.37 9.97 -39.10 -0.39 -5.76 16 13 C 0.16 3.42 6.27 -83.77 -0.53 2.90 16 14 N -0.66 -10.83 5.34 -9.91 -0.05 -10.89 16 15 C 0.49 8.18 6.64 -10.98 -0.07 8.11 16 16 O -0.51 -10.88 13.27 5.55 0.07 -10.81 16 17 C 0.06 0.74 3.90 -67.88 -0.26 0.47 16 18 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 19 C -0.12 -1.39 6.19 -24.91 -0.15 -1.54 16 20 C 0.10 0.93 4.42 -24.59 -0.11 0.82 16 21 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 22 O -0.56 -5.59 13.47 -35.23 -0.47 -6.06 16 23 C 0.01 0.11 7.30 -2.30 -0.02 0.09 16 24 N -0.66 -8.18 7.34 -105.03 -0.77 -8.95 16 25 C -0.20 -4.92 8.39 -38.68 -0.32 -5.24 16 26 H 0.29 7.08 8.30 -40.82 -0.34 6.75 16 27 H 0.10 2.39 4.20 -52.48 -0.22 2.17 16 28 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.40 4.85 8.82 -40.82 -0.36 4.49 16 31 H 0.09 1.21 7.84 -51.93 -0.41 0.80 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.38 2.00 9.11 45.56 0.42 2.42 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.36 5.19 7.18 -39.29 -0.28 4.91 16 37 H 0.11 2.91 6.40 -52.49 -0.34 2.57 16 LS Contribution 305.09 15.07 4.60 4.60 Total: -1.00 -32.44 305.09 -7.29 -39.74 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -3.76 Total: 13.16 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -3.54 Total: -16.74 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: -0.05 Total: -41.34 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.40 Total: -16.87 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.14 Total: 17.46 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.44 -7.29 -39.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313409734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.422 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds