Wall clock time and date at job start Mon Mar 30 2020 02:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 119.99643 * 2 1 4 4 H 1.48496 * 109.47349 * 275.30508 * 3 2 1 5 5 H 1.48503 * 109.47245 * 35.30698 * 3 2 1 6 6 H 1.48502 * 109.47099 * 155.30381 * 3 2 1 7 7 C 1.39926 * 120.00425 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99665 * 346.71743 * 7 2 1 9 9 C 1.41410 * 120.00193 * 166.71473 * 7 2 1 10 10 C 1.40774 * 120.21183 * 331.38576 * 9 7 2 11 11 C 1.37641 * 119.88888 * 179.97438 * 10 9 7 12 12 C 1.38531 * 120.31835 * 0.02825 * 11 10 9 13 13 C 1.39249 * 120.42949 * 359.97438 * 12 11 10 14 14 N 1.39932 * 119.94463 * 179.97438 * 13 12 11 15 15 C 1.34784 * 120.00051 * 146.75388 * 14 13 12 16 16 O 1.21285 * 119.99321 * 355.09017 * 15 14 13 17 17 C 1.50695 * 120.00248 * 174.81286 * 15 14 13 18 18 H 1.08998 * 109.87774 * 40.69696 * 17 15 14 19 19 C 1.54317 * 109.88810 * 279.49922 * 17 15 14 20 20 C 1.55139 * 103.01944 * 218.30857 * 19 17 15 21 21 H 1.09001 * 110.99159 * 277.56346 * 20 19 17 22 22 O 1.42899 * 110.99227 * 153.74560 * 20 19 17 23 23 C 1.54905 * 101.65150 * 35.65458 * 20 19 17 24 24 N 1.47446 * 109.88964 * 161.72963 * 17 15 14 25 25 C 1.38276 * 120.10703 * 0.24398 * 13 12 11 26 26 H 0.97000 * 120.00173 * 359.97438 * 1 2 3 27 27 H 1.08008 * 120.05500 * 359.97438 * 10 9 7 28 28 H 1.07998 * 119.83694 * 179.97438 * 11 10 9 29 29 H 1.08001 * 119.78361 * 179.97438 * 12 11 10 30 30 H 0.97004 * 120.00403 * 326.75437 * 14 13 12 31 31 H 1.08999 * 110.70816 * 336.69546 * 19 17 15 32 32 H 1.09003 * 110.70424 * 99.93181 * 19 17 15 33 33 H 0.96700 * 114.00533 * 186.28055 * 22 20 19 34 34 H 1.09003 * 110.37292 * 204.09881 * 23 20 19 35 35 H 1.09008 * 110.46727 * 81.80826 * 23 20 19 36 36 H 1.00898 * 110.99478 * 356.15253 * 24 17 15 37 37 H 1.08000 * 120.16157 * 179.72391 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3775 2.1112 -1.3940 5 1 1.5001 2.6177 0.8092 6 1 3.5913 1.4105 0.5850 7 6 2.0080 -1.2117 -0.0005 8 1 1.4896 -2.1347 0.2139 9 6 3.3937 -1.2279 -0.2820 10 6 3.9595 -0.2419 -1.1122 11 6 5.3092 -0.2637 -1.3813 12 6 6.1144 -1.2521 -0.8394 13 6 5.5687 -2.2340 -0.0165 14 7 6.3914 -3.2280 0.5251 15 6 6.1240 -3.7330 1.7458 16 8 5.2250 -3.2649 2.4119 17 6 6.9378 -4.8832 2.2802 18 1 7.9893 -4.7405 2.0311 19 6 6.4280 -6.2104 1.6803 20 6 6.5358 -7.1971 2.8726 21 1 7.5509 -7.5819 2.9705 22 8 5.5963 -8.2656 2.7394 23 6 6.1709 -6.2833 4.0689 24 7 6.7767 -4.9747 3.7430 25 6 4.2142 -2.2316 0.2619 26 1 -0.4850 0.8400 0.0004 27 1 3.3355 0.5304 -1.5374 28 1 5.7423 0.4929 -2.0187 29 1 7.1723 -1.2613 -1.0566 30 1 7.1542 -3.5536 0.0220 31 1 5.3928 -6.1130 1.3530 32 1 7.0654 -6.5308 0.8561 33 1 5.5589 -8.8543 3.5056 34 1 6.5955 -6.6786 4.9918 35 1 5.0888 -6.1884 4.1600 36 1 6.2098 -4.2167 4.0924 37 1 3.7893 -2.9953 0.8964 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313409734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:17 Heat of formation + Delta-G solvation = -85.804920 kcal Electronic energy + Delta-G solvation = -21014.238120 eV Core-core repulsion = 17754.784565 eV Total energy + Delta-G solvation = -3259.453555 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.78461 -39.91338 -38.84128 -36.52620 -36.19877 -35.09434 -32.25019 -31.41309 -30.39513 -29.26863 -27.19109 -24.68034 -22.85812 -22.66623 -22.20234 -21.11941 -19.70296 -19.14378 -17.95558 -17.72021 -17.52362 -16.91450 -16.46922 -16.30379 -16.10050 -15.31186 -15.09644 -14.69850 -14.59177 -14.27236 -14.08412 -13.86476 -13.77255 -13.45419 -13.12544 -12.98243 -12.74237 -12.60750 -12.53061 -11.93999 -11.83167 -11.65109 -11.39484 -11.07334 -10.89451 -10.79747 -9.72981 -9.58341 -8.92848 -8.90059 -6.58387 0.58680 0.76618 1.21381 1.39353 1.45373 1.54507 2.03540 2.10397 2.57791 2.84884 3.38768 3.47422 3.49932 3.55378 3.77771 4.01313 4.25502 4.28789 4.36302 4.48202 4.55754 4.68490 4.74077 4.83813 4.86651 4.94669 4.97776 5.01689 5.29779 5.52659 5.59641 5.67147 5.74712 5.87827 5.98941 6.18499 6.32590 6.48182 6.69572 6.75633 6.83166 7.15598 8.16741 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.004489 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.127429 B = 6235.408788 C = 6773.596122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.041 3.959 3 Si 0.977 3.023 4 H -0.248 1.248 5 H -0.281 1.281 6 H -0.252 1.252 7 C -0.486 4.486 8 H 0.042 0.958 9 C 0.081 3.919 10 C -0.260 4.260 11 C -0.063 4.063 12 C -0.236 4.236 13 C 0.167 3.833 14 N -0.649 5.649 15 C 0.487 3.513 16 O -0.566 6.566 17 C 0.073 3.927 18 H 0.150 0.850 19 C -0.128 4.128 20 C 0.104 3.896 21 H 0.110 0.890 22 O -0.580 6.580 23 C 0.007 3.993 24 N -0.661 5.661 25 C -0.225 4.225 26 H 0.294 0.706 27 H 0.100 0.900 28 H 0.143 0.857 29 H 0.148 0.852 30 H 0.428 0.572 31 H 0.048 0.952 32 H 0.122 0.878 33 H 0.401 0.599 34 H 0.110 0.890 35 H 0.031 0.969 36 H 0.346 0.654 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.728 -10.316 2.916 21.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.172 4.172 3 Si 0.800 3.200 4 H -0.173 1.173 5 H -0.209 1.209 6 H -0.176 1.176 7 C -0.515 4.515 8 H 0.060 0.940 9 C 0.078 3.922 10 C -0.279 4.279 11 C -0.082 4.082 12 C -0.257 4.257 13 C 0.073 3.927 14 N -0.295 5.295 15 C 0.274 3.726 16 O -0.443 6.443 17 C -0.040 4.040 18 H 0.168 0.832 19 C -0.167 4.167 20 C 0.045 3.955 21 H 0.128 0.872 22 O -0.388 6.388 23 C -0.122 4.122 24 N -0.294 5.294 25 C -0.247 4.247 26 H 0.105 0.895 27 H 0.117 0.883 28 H 0.161 0.839 29 H 0.166 0.834 30 H 0.267 0.733 31 H 0.066 0.934 32 H 0.140 0.860 33 H 0.251 0.749 34 H 0.128 0.872 35 H 0.049 0.951 36 H 0.166 0.834 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 18.388 -9.887 3.000 21.092 hybrid contribution -1.535 0.331 0.258 1.591 sum 16.853 -9.556 3.258 19.646 Atomic orbital electron populations 1.69695 1.09213 1.31512 1.37911 1.26931 0.95574 1.04488 0.90212 0.85354 0.79293 0.75586 0.79764 1.17271 1.20858 1.17598 1.19464 0.93125 0.94861 1.44093 0.93958 1.17734 0.92551 0.92138 0.89778 1.21114 0.96856 1.03547 1.06404 1.20889 0.92240 0.97503 0.97544 1.20657 1.00291 0.97514 1.07255 1.17627 0.88898 0.90364 0.95808 1.43349 1.30552 1.37843 1.17794 1.22096 0.84600 0.84731 0.81136 1.90766 1.33321 1.61466 1.58775 1.22514 1.01297 0.90925 0.89287 0.83235 1.22770 1.02142 0.92097 0.99655 1.22953 0.93610 0.86473 0.92479 0.87239 1.86490 1.63177 1.42282 1.46839 1.23731 0.97602 0.90038 1.00869 1.62337 1.52872 1.05609 1.08619 1.20852 0.92740 1.04000 1.07101 0.89520 0.88271 0.83908 0.83390 0.73291 0.93351 0.86007 0.74856 0.87174 0.95076 0.83440 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.04 13.93 21.82 0.30 -49.74 16 2 C 0.04 2.37 5.47 85.25 0.47 2.83 16 3 Si 0.98 45.25 24.37 68.60 1.67 46.92 16 4 H -0.25 -10.41 6.77 99.48 0.67 -9.74 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.25 -12.00 6.48 99.48 0.64 -11.35 16 7 C -0.49 -29.87 9.61 23.46 0.23 -29.65 16 8 H 0.04 2.85 8.06 -2.91 -0.02 2.83 16 9 C 0.08 4.47 5.19 -21.31 -0.11 4.36 16 10 C -0.26 -12.49 6.91 22.75 0.16 -12.33 16 11 C -0.06 -2.46 10.02 22.20 0.22 -2.24 16 12 C -0.24 -8.45 9.97 22.58 0.23 -8.22 16 13 C 0.17 6.79 6.27 38.10 0.24 7.03 16 14 N -0.65 -19.61 5.34 -303.66 -1.62 -21.23 16 15 C 0.49 15.85 6.64 87.65 0.58 16.43 16 16 O -0.57 -25.06 13.27 -3.05 -0.04 -25.10 16 17 C 0.07 1.58 3.90 44.51 0.17 1.75 16 18 H 0.15 2.09 8.14 -2.39 -0.02 2.08 16 19 C -0.13 -2.58 6.19 31.77 0.20 -2.38 16 20 C 0.10 1.74 4.42 31.98 0.14 1.88 16 21 H 0.11 1.19 8.14 -2.39 -0.02 1.18 16 22 O -0.58 -10.64 13.47 -148.98 -2.01 -12.65 16 23 C 0.01 0.14 7.30 86.77 0.63 0.77 16 24 N -0.66 -15.42 7.34 -486.20 -3.57 -18.98 16 25 C -0.23 -11.67 8.39 22.85 0.19 -11.48 16 26 H 0.29 15.34 8.30 -92.71 -0.77 14.57 16 27 H 0.10 4.70 4.20 -2.91 -0.01 4.69 16 28 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 29 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 30 H 0.43 8.34 8.82 -92.71 -0.82 7.52 16 31 H 0.05 1.36 7.84 -2.39 -0.02 1.34 16 32 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.40 3.46 9.11 -74.06 -0.67 2.78 16 34 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.35 10.08 7.18 -89.70 -0.64 9.43 16 37 H 0.08 4.66 6.40 -2.91 -0.02 4.64 16 Total: -1.00 -78.51 305.09 -3.02 -81.53 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: -1.10 Total: 30.49 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 3.34 Total: -31.24 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -4.89 Total: -89.95 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -2.05 Total: -37.75 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.67 Total: 46.92 kcal Total: -78.51 -3.02 -81.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313409734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.279 kcal (2) G-P(sol) polarization free energy of solvation -78.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds