Wall clock time and date at job start Mon Mar 30 2020 02:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86800 * 119.99746 * 2 1 4 4 H 1.48506 * 109.46913 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47275 * 299.99225 * 3 2 1 6 6 H 1.48494 * 109.47615 * 59.99568 * 3 2 1 7 7 C 1.39930 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99677 * 169.00832 * 7 2 1 9 9 C 1.41407 * 120.00141 * 349.01533 * 7 2 1 10 10 C 1.40768 * 120.20616 * 331.76006 * 9 7 2 11 11 C 1.37651 * 119.88465 * 180.02562 * 10 9 7 12 12 C 1.38534 * 120.31856 * 359.97438 * 11 10 9 13 13 C 1.39242 * 120.42739 * 0.02562 * 12 11 10 14 14 N 1.39943 * 119.94176 * 179.97438 * 13 12 11 15 15 C 1.34783 * 119.99648 * 146.37870 * 14 13 12 16 16 O 1.21286 * 119.99767 * 354.86483 * 15 14 13 17 17 C 1.50697 * 119.99786 * 174.86962 * 15 14 13 18 18 H 1.08996 * 110.37167 * 317.64497 * 17 15 14 19 19 C 1.54378 * 110.41183 * 79.99818 * 17 15 14 20 20 C 1.54257 * 105.06151 * 142.62895 * 19 17 15 21 21 H 1.09001 * 110.32523 * 118.89741 * 20 19 17 22 22 O 1.42897 * 110.32861 * 241.00330 * 20 19 17 23 23 C 1.54382 * 105.06384 * 0.02562 * 20 19 17 24 24 N 1.48561 * 104.58970 * 336.14545 * 23 20 19 25 25 C 1.38278 * 120.10859 * 0.25011 * 13 12 11 26 26 H 0.96991 * 120.00042 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.06503 * 359.97438 * 10 9 7 28 28 H 1.08003 * 119.83908 * 180.02562 * 11 10 9 29 29 H 1.08001 * 119.78291 * 180.02562 * 12 11 10 30 30 H 0.96991 * 120.00195 * 326.37379 * 14 13 12 31 31 H 1.08999 * 110.32364 * 23.73627 * 19 17 15 32 32 H 1.09005 * 110.41279 * 261.57182 * 19 17 15 33 33 H 0.96705 * 114.00614 * 178.57774 * 22 20 19 34 34 H 1.09001 * 110.40959 * 94.92245 * 23 20 19 35 35 H 1.08998 * 110.41277 * 217.36696 * 23 20 19 36 36 H 1.00901 * 110.99782 * 159.03317 * 24 23 20 37 37 H 1.08009 * 120.16160 * 179.73194 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8835 2.3966 1.2124 7 6 2.0080 -1.2118 0.0005 8 1 3.0732 -1.2204 -0.1778 9 6 1.3204 -2.4251 0.2344 10 6 0.1514 -2.4369 1.0185 11 6 -0.5124 -3.6219 1.2424 12 6 -0.0358 -4.8038 0.6992 13 6 1.1193 -4.8073 -0.0784 14 7 1.5919 -6.0072 -0.6216 15 6 2.2046 -6.0082 -1.8222 16 8 2.2638 -4.9869 -2.4736 17 6 2.8158 -7.2784 -2.3551 18 1 3.3467 -7.8056 -1.5626 19 6 1.7263 -8.1842 -2.9682 20 6 2.3894 -8.8294 -4.2025 21 1 2.4152 -9.9138 -4.0950 22 8 1.6847 -8.4661 -5.3914 23 6 3.8239 -8.2597 -4.2311 24 7 3.7328 -6.9786 -3.4846 25 6 1.8032 -3.6280 -0.3098 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2237 -1.5181 1.4444 28 1 -1.4095 -3.6300 1.8437 29 1 -0.5637 -5.7285 0.8800 30 1 1.4787 -6.8381 -0.1342 31 1 0.8644 -7.5889 -3.2694 32 1 1.4250 -8.9520 -2.2556 33 1 2.0697 -8.8256 -6.2024 34 1 4.5137 -8.9415 -3.7335 35 1 4.1410 -8.0795 -5.2583 36 1 4.6394 -6.6911 -3.1478 37 1 2.7017 -3.6304 -0.9093 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313409735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:22 Heat of formation + Delta-G solvation = -53.452092 kcal Electronic energy + Delta-G solvation = -20843.320118 eV Core-core repulsion = 17585.269487 eV Total energy + Delta-G solvation = -3258.050631 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.08388 -38.55339 -36.99707 -35.37168 -34.33196 -32.94909 -30.22804 -29.76110 -29.11433 -27.58976 -25.24488 -23.28702 -21.32489 -21.00071 -20.67021 -19.40097 -17.76598 -17.66800 -16.93973 -16.57114 -15.48518 -15.10510 -14.78861 -14.57430 -14.24787 -13.87024 -13.56292 -13.30631 -12.93834 -12.79608 -12.51469 -12.19450 -12.01215 -11.81122 -11.53236 -11.25754 -11.21336 -11.06076 -10.56378 -10.44076 -10.24836 -10.04919 -9.67696 -9.38570 -9.11651 -8.85482 -8.58772 -7.36436 -6.83315 -6.60894 -4.29219 2.65312 2.87913 3.14377 3.20585 3.23252 3.37335 3.45613 4.00803 4.02822 4.19922 4.41103 4.47430 4.72640 4.83376 4.91715 5.15460 5.21672 5.26732 5.49393 5.62389 5.76772 5.91330 6.27713 6.40199 6.42958 6.83588 7.05035 7.08423 7.12113 7.14235 7.33137 7.48466 7.63453 7.78557 8.02719 8.15179 8.24235 8.34797 8.70938 8.83116 9.00938 9.04348 10.32546 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024815 B = 0.004127 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.084063 B = 6782.202287 C = 7456.415036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.457 4.457 8 H 0.076 0.924 9 C 0.119 3.881 10 C -0.167 4.167 11 C -0.095 4.095 12 C -0.259 4.259 13 C 0.152 3.848 14 N -0.672 5.672 15 C 0.508 3.492 16 O -0.486 6.486 17 C 0.051 3.949 18 H 0.071 0.929 19 C -0.110 4.110 20 C 0.103 3.897 21 H 0.066 0.934 22 O -0.553 6.553 23 C 0.006 3.994 24 N -0.632 5.632 25 C -0.208 4.208 26 H 0.278 0.722 27 H 0.121 0.879 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.396 0.604 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.376 0.624 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.344 0.656 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.445 -16.764 -3.625 17.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.094 0.906 9 C 0.116 3.884 10 C -0.187 4.187 11 C -0.114 4.114 12 C -0.281 4.281 13 C 0.060 3.940 14 N -0.317 5.317 15 C 0.292 3.708 16 O -0.357 6.357 17 C -0.063 4.063 18 H 0.089 0.911 19 C -0.149 4.149 20 C 0.044 3.956 21 H 0.084 0.916 22 O -0.358 6.358 23 C -0.124 4.124 24 N -0.262 5.262 25 C -0.230 4.230 26 H 0.089 0.911 27 H 0.139 0.861 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.229 0.771 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.223 0.777 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.160 0.840 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.483 -15.177 -4.170 16.365 hybrid contribution 1.176 -0.591 0.401 1.376 sum 5.659 -15.768 -3.768 17.171 Atomic orbital electron populations 1.69813 1.07416 1.28781 1.36743 1.25879 0.94820 1.01181 0.92429 0.86218 0.80826 0.80971 0.78407 1.18505 1.19999 1.19855 1.19579 0.95991 0.90424 1.42767 0.90553 1.17510 0.91421 0.91699 0.87809 1.21402 0.98910 0.96609 1.01800 1.20484 0.98325 0.92885 0.99679 1.20056 0.99095 0.97416 1.11498 1.17425 0.94390 0.84766 0.97423 1.43474 1.58884 1.09756 1.19603 1.20176 0.79644 0.89965 0.80970 1.90791 1.55323 1.33243 1.56392 1.22426 0.95433 0.94243 0.94165 0.91106 1.22299 0.98810 0.98471 0.95279 1.22487 0.90211 0.96712 0.86235 0.91641 1.86647 1.55494 1.77736 1.15955 1.23710 0.97130 0.91064 1.00514 1.63288 1.14644 1.27739 1.20575 1.20974 1.03136 0.91931 1.06939 0.91111 0.86095 0.89053 0.89327 0.77105 0.88832 0.89537 0.77697 0.93406 0.89239 0.83997 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.73 10.82 55.55 0.60 -21.12 16 2 C 0.07 1.93 5.25 -17.34 -0.09 1.84 16 3 Si 0.91 19.68 29.57 -169.99 -5.03 14.66 16 4 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.46 -12.88 9.06 -37.74 -0.34 -13.23 16 8 H 0.08 2.09 7.87 -52.48 -0.41 1.68 16 9 C 0.12 3.34 5.55 -106.85 -0.59 2.75 16 10 C -0.17 -4.50 8.66 -38.84 -0.34 -4.83 16 11 C -0.09 -2.26 10.02 -39.69 -0.40 -2.66 16 12 C -0.26 -5.83 9.97 -39.10 -0.39 -6.21 16 13 C 0.15 3.52 6.26 -83.77 -0.52 2.99 16 14 N -0.67 -12.18 5.34 -9.91 -0.05 -12.23 16 15 C 0.51 9.48 6.75 -10.98 -0.07 9.41 16 16 O -0.49 -11.80 14.28 5.55 0.08 -11.73 16 17 C 0.05 0.67 3.58 -67.24 -0.24 0.42 16 18 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 19 C -0.11 -1.27 6.35 -25.35 -0.16 -1.43 16 20 C 0.10 1.00 4.42 -25.35 -0.11 0.88 16 21 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 22 O -0.55 -6.25 13.27 -35.23 -0.47 -6.72 16 23 C 0.01 0.05 7.21 -2.18 -0.02 0.04 16 24 N -0.63 -8.36 6.86 -103.97 -0.71 -9.07 16 25 C -0.21 -5.55 8.39 -38.69 -0.32 -5.87 16 26 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 27 H 0.12 3.33 6.18 -52.49 -0.32 3.00 16 28 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 29 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.40 5.40 8.82 -40.82 -0.36 5.04 16 31 H 0.09 1.39 7.69 -51.93 -0.40 0.99 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.38 2.36 9.12 45.56 0.42 2.78 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.09 0.77 8.08 -51.93 -0.42 0.35 16 36 H 0.34 4.07 8.92 -39.29 -0.35 3.72 16 37 H 0.11 2.90 6.44 -52.48 -0.34 2.57 16 LS Contribution 313.02 15.07 4.72 4.72 Total: -1.00 -35.12 313.02 -8.33 -43.45 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -3.86 Total: 13.94 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -3.60 Total: -15.90 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: -0.17 Total: -42.43 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.39 Total: -18.44 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.12 -8.33 -43.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313409735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.000 kcal (2) G-P(sol) polarization free energy of solvation -35.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds