Wall clock time and date at job start Mon Mar 30 2020 02:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86800 * 119.99746 * 2 1 4 4 H 1.48506 * 109.46913 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47275 * 299.99225 * 3 2 1 6 6 H 1.48494 * 109.47615 * 59.99568 * 3 2 1 7 7 C 1.39930 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99677 * 169.00832 * 7 2 1 9 9 C 1.41407 * 120.00141 * 349.01533 * 7 2 1 10 10 C 1.40768 * 120.20616 * 331.76006 * 9 7 2 11 11 C 1.37651 * 119.88465 * 180.02562 * 10 9 7 12 12 C 1.38534 * 120.31856 * 359.97438 * 11 10 9 13 13 C 1.39242 * 120.42739 * 0.02562 * 12 11 10 14 14 N 1.39943 * 119.94176 * 179.97438 * 13 12 11 15 15 C 1.34783 * 119.99648 * 146.37870 * 14 13 12 16 16 O 1.21286 * 119.99767 * 354.86483 * 15 14 13 17 17 C 1.50697 * 119.99786 * 174.86962 * 15 14 13 18 18 H 1.08996 * 110.37167 * 317.64497 * 17 15 14 19 19 C 1.54378 * 110.41183 * 79.99818 * 17 15 14 20 20 C 1.54257 * 105.06151 * 142.62895 * 19 17 15 21 21 H 1.09001 * 110.32523 * 118.89741 * 20 19 17 22 22 O 1.42897 * 110.32861 * 241.00330 * 20 19 17 23 23 C 1.54382 * 105.06384 * 0.02562 * 20 19 17 24 24 N 1.48561 * 104.58970 * 336.14545 * 23 20 19 25 25 C 1.38278 * 120.10859 * 0.25011 * 13 12 11 26 26 H 0.96991 * 120.00042 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.06503 * 359.97438 * 10 9 7 28 28 H 1.08003 * 119.83908 * 180.02562 * 11 10 9 29 29 H 1.08001 * 119.78291 * 180.02562 * 12 11 10 30 30 H 0.96991 * 120.00195 * 326.37379 * 14 13 12 31 31 H 1.08999 * 110.32364 * 23.73627 * 19 17 15 32 32 H 1.09005 * 110.41279 * 261.57182 * 19 17 15 33 33 H 0.96705 * 114.00614 * 178.57774 * 22 20 19 34 34 H 1.09001 * 110.40959 * 94.92245 * 23 20 19 35 35 H 1.08998 * 110.41277 * 217.36696 * 23 20 19 36 36 H 1.00901 * 110.99782 * 159.03317 * 24 23 20 37 37 H 1.08009 * 120.16160 * 179.73194 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8835 2.3966 1.2124 7 6 2.0080 -1.2118 0.0005 8 1 3.0732 -1.2204 -0.1778 9 6 1.3204 -2.4251 0.2344 10 6 0.1514 -2.4369 1.0185 11 6 -0.5124 -3.6219 1.2424 12 6 -0.0358 -4.8038 0.6992 13 6 1.1193 -4.8073 -0.0784 14 7 1.5919 -6.0072 -0.6216 15 6 2.2046 -6.0082 -1.8222 16 8 2.2638 -4.9869 -2.4736 17 6 2.8158 -7.2784 -2.3551 18 1 3.3467 -7.8056 -1.5626 19 6 1.7263 -8.1842 -2.9682 20 6 2.3894 -8.8294 -4.2025 21 1 2.4152 -9.9138 -4.0950 22 8 1.6847 -8.4661 -5.3914 23 6 3.8239 -8.2597 -4.2311 24 7 3.7328 -6.9786 -3.4846 25 6 1.8032 -3.6280 -0.3098 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2237 -1.5181 1.4444 28 1 -1.4095 -3.6300 1.8437 29 1 -0.5637 -5.7285 0.8800 30 1 1.4787 -6.8381 -0.1342 31 1 0.8644 -7.5889 -3.2694 32 1 1.4250 -8.9520 -2.2556 33 1 2.0697 -8.8256 -6.2024 34 1 4.5137 -8.9415 -3.7335 35 1 4.1410 -8.0795 -5.2583 36 1 4.6394 -6.6911 -3.1478 37 1 2.7017 -3.6304 -0.9093 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313409735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:21 Heat of formation + Delta-G solvation = -83.255413 kcal Electronic energy + Delta-G solvation = -20844.612487 eV Core-core repulsion = 17585.269487 eV Total energy + Delta-G solvation = -3259.343000 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.45218 -39.76539 -38.68393 -36.33621 -36.10534 -34.80745 -31.75461 -31.29734 -30.27255 -29.00768 -27.26339 -24.55809 -22.92377 -22.44882 -21.93262 -20.89733 -19.54250 -18.56530 -18.18976 -17.66266 -17.36288 -16.68647 -16.45460 -16.03803 -15.69519 -15.05121 -14.83240 -14.75002 -14.44234 -14.23975 -13.87547 -13.62824 -13.28447 -13.12278 -12.90703 -12.84141 -12.72577 -12.53803 -12.21186 -12.11514 -11.88557 -11.57094 -11.22039 -10.97093 -10.85589 -10.55421 -9.55095 -9.36728 -8.71837 -8.58221 -6.39697 0.86578 0.98318 1.35083 1.46451 1.51087 1.79390 2.11359 2.21915 2.74706 3.22366 3.31401 3.52906 3.71800 3.73529 3.98190 3.99489 4.24605 4.46003 4.50867 4.59056 4.61900 4.78871 4.91151 5.00323 5.05165 5.09341 5.12911 5.22350 5.33291 5.59652 5.77972 5.85955 6.06967 6.11438 6.23573 6.35259 6.67699 6.71453 6.93697 6.96647 7.00282 7.39072 8.36984 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024815 B = 0.004127 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.084063 B = 6782.202287 C = 7456.415036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.032 3.968 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.503 4.503 8 H 0.064 0.936 9 C 0.087 3.913 10 C -0.193 4.193 11 C -0.094 4.094 12 C -0.247 4.247 13 C 0.156 3.844 14 N -0.658 5.658 15 C 0.502 3.498 16 O -0.553 6.553 17 C 0.063 3.937 18 H 0.115 0.885 19 C -0.113 4.113 20 C 0.101 3.899 21 H 0.107 0.893 22 O -0.586 6.586 23 C 0.009 3.991 24 N -0.672 5.672 25 C -0.235 4.235 26 H 0.287 0.713 27 H 0.106 0.894 28 H 0.124 0.876 29 H 0.134 0.866 30 H 0.422 0.578 31 H 0.051 0.949 32 H 0.127 0.873 33 H 0.395 0.605 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.346 0.654 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.529 -19.587 -3.180 20.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.182 4.182 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.180 1.180 7 C -0.533 4.533 8 H 0.082 0.918 9 C 0.084 3.916 10 C -0.213 4.213 11 C -0.112 4.112 12 C -0.268 4.268 13 C 0.063 3.937 14 N -0.305 5.305 15 C 0.290 3.710 16 O -0.428 6.428 17 C -0.051 4.051 18 H 0.133 0.867 19 C -0.151 4.151 20 C 0.042 3.958 21 H 0.125 0.875 22 O -0.395 6.395 23 C -0.119 4.119 24 N -0.303 5.303 25 C -0.257 4.257 26 H 0.098 0.902 27 H 0.124 0.876 28 H 0.142 0.858 29 H 0.152 0.848 30 H 0.260 0.740 31 H 0.070 0.930 32 H 0.145 0.855 33 H 0.245 0.755 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.163 0.837 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.567 -18.087 -3.717 19.021 hybrid contribution 1.106 0.122 0.220 1.134 sum 5.673 -17.965 -3.496 19.161 Atomic orbital electron populations 1.69862 1.08760 1.30245 1.37100 1.26751 0.95722 1.04403 0.91288 0.85102 0.79041 0.75992 0.79153 1.18597 1.19181 1.18005 1.19788 0.95800 0.92099 1.45583 0.91764 1.17860 0.92550 0.92443 0.88760 1.21364 0.99454 0.97481 1.02997 1.20878 0.98847 0.92252 0.99266 1.20517 0.98183 0.98711 1.09396 1.17537 0.94028 0.85626 0.96522 1.43376 1.58215 1.09157 1.19743 1.21412 0.78177 0.91300 0.80159 1.90766 1.57581 1.36297 1.58184 1.22428 0.96092 0.91125 0.95426 0.86748 1.22428 0.96735 0.98588 0.97324 1.22695 0.89561 0.98689 0.84808 0.87522 1.86595 1.56679 1.78649 1.17552 1.23810 0.97848 0.89793 1.00470 1.63205 1.15015 1.30797 1.21311 1.20931 1.03435 0.93434 1.07919 0.90221 0.87587 0.85771 0.84792 0.74029 0.92985 0.85481 0.75502 0.89997 0.89051 0.83713 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.78 10.82 21.82 0.24 -46.55 16 2 C 0.03 1.73 5.25 85.25 0.45 2.18 16 3 Si 0.99 41.65 29.57 68.60 2.03 43.68 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 6 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 7 C -0.50 -30.14 9.06 23.46 0.21 -29.92 16 8 H 0.06 3.82 7.87 -2.91 -0.02 3.79 16 9 C 0.09 5.15 5.55 -21.31 -0.12 5.03 16 10 C -0.19 -10.70 8.66 22.75 0.20 -10.50 16 11 C -0.09 -4.38 10.02 22.20 0.22 -4.16 16 12 C -0.25 -10.58 9.97 22.58 0.23 -10.36 16 13 C 0.16 7.23 6.26 38.10 0.24 7.47 16 14 N -0.66 -22.96 5.34 -303.65 -1.62 -24.58 16 15 C 0.50 18.68 6.75 87.66 0.59 19.27 16 16 O -0.55 -28.12 14.28 -3.05 -0.04 -28.16 16 17 C 0.06 1.49 3.58 44.32 0.16 1.65 16 18 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 19 C -0.11 -2.27 6.35 31.49 0.20 -2.07 16 20 C 0.10 1.61 4.42 31.49 0.14 1.75 16 21 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 22 O -0.59 -12.25 13.27 -148.98 -1.98 -14.22 16 23 C 0.01 0.15 7.21 86.45 0.62 0.77 16 24 N -0.67 -16.93 6.86 -482.84 -3.31 -20.24 16 25 C -0.24 -13.18 8.39 22.85 0.19 -12.99 16 26 H 0.29 14.47 8.30 -92.71 -0.77 13.70 16 27 H 0.11 6.09 6.18 -2.91 -0.02 6.08 16 28 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 29 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 30 H 0.42 10.10 8.82 -92.71 -0.82 9.28 16 31 H 0.05 1.50 7.69 -2.39 -0.02 1.48 16 32 H 0.13 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.39 4.23 9.12 -74.05 -0.68 3.56 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 1.36 8.08 -2.39 -0.02 1.34 16 36 H 0.35 7.93 8.92 -89.69 -0.80 7.13 16 37 H 0.08 4.88 6.44 -2.91 -0.02 4.86 16 Total: -1.00 -83.77 313.02 -2.52 -86.29 By element: Atomic # 1 Polarization: 36.83 SS G_CDS: -1.16 Total: 35.67 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 3.33 Total: -31.89 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -4.70 Total: -91.37 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -2.02 Total: -42.38 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -83.77 -2.52 -86.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313409735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.038 kcal (2) G-P(sol) polarization free energy of solvation -83.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds