Wall clock time and date at job start Mon Mar 30 2020 02:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86796 * 120.00601 * 2 1 4 4 H 1.48504 * 109.47171 * 264.99967 * 3 2 1 5 5 H 1.48498 * 109.47059 * 24.99576 * 3 2 1 6 6 H 1.48498 * 109.47502 * 144.99826 * 3 2 1 7 7 C 1.39938 * 119.99657 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00110 * 185.91581 * 7 2 1 9 9 C 1.41410 * 120.00033 * 5.91410 * 7 2 1 10 10 C 1.40776 * 120.20713 * 33.70136 * 9 7 2 11 11 C 1.37641 * 119.88419 * 179.97438 * 10 9 7 12 12 C 1.38536 * 120.32027 * 0.02562 * 11 10 9 13 13 C 1.39249 * 120.42745 * 359.97438 * 12 11 10 14 14 N 1.39949 * 119.94385 * 179.72443 * 13 12 11 15 15 C 1.34779 * 120.00161 * 144.68531 * 14 13 12 16 16 O 1.21588 * 119.99902 * 4.09193 * 15 14 13 17 17 N 1.34775 * 120.00138 * 184.09715 * 15 14 13 18 18 C 1.47155 * 120.98159 * 185.10511 * 17 15 14 19 19 C 1.53716 * 108.16097 * 129.42858 * 18 17 15 20 20 O 1.42961 * 109.14390 * 52.54002 * 19 18 17 21 21 C 1.42962 * 114.17098 * 297.28804 * 20 19 18 22 22 C 1.47146 * 120.98453 * 5.38892 * 17 15 14 23 23 C 1.38277 * 120.10601 * 359.97438 * 13 12 11 24 24 H 0.97005 * 119.99498 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.06082 * 359.97438 * 10 9 7 26 26 H 1.07997 * 119.84098 * 179.97438 * 11 10 9 27 27 H 1.07997 * 119.78407 * 179.97438 * 12 11 10 28 28 H 0.97001 * 120.00011 * 324.67751 * 14 13 12 29 29 H 1.08997 * 109.68267 * 249.21009 * 18 17 15 30 30 H 1.09003 * 109.68234 * 9.76797 * 18 17 15 31 31 H 1.08993 * 109.66145 * 292.57504 * 19 18 17 32 32 H 1.08997 * 109.48549 * 172.40178 * 19 18 17 33 33 H 1.08999 * 109.51022 * 302.66174 * 21 20 19 34 34 H 1.08998 * 109.55511 * 182.53001 * 21 20 19 35 35 H 1.09003 * 109.68019 * 350.23529 * 22 17 15 36 36 H 1.08998 * 109.68405 * 110.78649 * 22 17 15 37 37 H 1.07995 * 120.15925 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.5956 1.9853 -1.3948 5 1 1.3911 2.6808 0.5916 6 1 3.4831 1.4728 0.8031 7 6 2.0079 -1.2119 0.0005 8 1 3.0835 -1.2145 0.0969 9 6 1.3064 -2.4333 -0.1251 10 6 0.1411 -2.5032 -0.9119 11 6 -0.5362 -3.6956 -1.0300 12 6 -0.0770 -4.8283 -0.3777 13 6 1.0741 -4.7741 0.4039 14 7 1.5256 -5.9231 1.0631 15 6 2.8478 -6.1454 1.2008 16 8 3.6473 -5.3127 0.8189 17 7 3.2838 -7.2907 1.7617 18 6 4.7153 -7.5085 2.0244 19 6 4.8710 -7.9597 3.4856 20 8 4.0053 -9.0712 3.7278 21 6 2.6151 -8.7746 3.5753 22 6 2.3433 -8.3628 2.1239 23 6 1.7689 -3.5856 0.5340 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2208 -1.6227 -1.4219 26 1 -1.4303 -3.7483 -1.6334 27 1 -0.6155 -5.7593 -0.4760 28 1 0.8870 -6.5595 1.4210 29 1 5.0979 -8.2799 1.3562 30 1 5.2632 -6.5796 1.8655 31 1 4.6060 -7.1396 4.1528 32 1 5.9041 -8.2566 3.6663 33 1 2.3418 -7.9575 4.2428 34 1 2.0247 -9.6576 3.8199 35 1 1.3196 -8.0000 2.0308 36 1 2.4912 -9.2188 1.4655 37 1 2.6615 -3.5425 1.1403 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313447226.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:17 Heat of formation + Delta-G solvation = -36.395474 kcal Electronic energy + Delta-G solvation = -21093.396053 eV Core-core repulsion = 17836.085053 eV Total energy + Delta-G solvation = -3257.311000 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.50940 -38.74865 -37.18661 -34.69621 -34.49211 -32.98800 -31.47255 -29.76411 -28.65492 -27.15636 -25.23698 -24.31482 -22.66016 -21.05699 -20.76935 -19.33896 -18.38050 -17.42379 -16.51817 -15.92516 -15.74857 -15.41462 -15.26792 -14.88415 -14.64356 -14.44420 -14.00723 -13.57947 -13.01448 -12.86974 -12.66196 -12.16586 -11.95903 -11.65245 -11.58606 -11.14991 -11.10141 -10.96147 -10.86749 -10.43830 -10.36438 -10.16213 -9.66173 -9.41855 -9.16855 -8.93608 -8.55898 -7.34895 -6.88529 -6.58475 -4.31757 2.61450 2.80124 2.95970 3.13487 3.17570 3.23852 3.56759 3.62938 4.02105 4.08250 4.52396 4.74124 4.78712 4.81177 4.89621 5.06318 5.25557 5.38320 5.50644 5.57904 5.71169 5.77300 6.22896 6.33212 6.38502 6.76062 6.77795 6.84007 7.06464 7.14660 7.23934 7.34045 7.69152 7.79955 7.98641 8.16464 8.25952 8.37392 8.71626 8.89874 9.01946 9.02978 10.35348 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.026316 B = 0.004248 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.755212 B = 6589.747213 C = 7337.883903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.119 3.881 10 C -0.159 4.159 11 C -0.097 4.097 12 C -0.253 4.253 13 C 0.158 3.842 14 N -0.679 5.679 15 C 0.703 3.297 16 O -0.562 6.562 17 N -0.639 5.639 18 C 0.097 3.903 19 C 0.047 3.953 20 O -0.382 6.382 21 C 0.047 3.953 22 C 0.077 3.923 23 C -0.200 4.200 24 H 0.277 0.723 25 H 0.119 0.881 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.392 0.608 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.106 0.894 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.968 -14.247 5.892 15.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.116 3.884 10 C -0.179 4.179 11 C -0.116 4.116 12 C -0.275 4.275 13 C 0.066 3.934 14 N -0.328 5.328 15 C 0.405 3.595 16 O -0.437 6.437 17 N -0.379 5.379 18 C -0.026 4.026 19 C -0.031 4.031 20 O -0.300 6.300 21 C -0.030 4.030 22 C -0.047 4.047 23 C -0.221 4.221 24 H 0.088 0.912 25 H 0.137 0.863 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.228 0.772 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.453 -13.647 5.666 15.174 hybrid contribution -0.264 0.587 0.140 0.658 sum 3.189 -13.060 5.806 14.644 Atomic orbital electron populations 1.69781 1.07278 1.28763 1.37996 1.25841 0.94865 1.00994 0.92528 0.86267 0.80191 0.80523 0.79315 1.19376 1.20439 1.18798 1.19528 0.95007 0.90029 1.44832 0.90530 1.17534 0.91306 0.91689 0.87850 1.21377 0.98627 0.96260 1.01628 1.20477 0.98552 0.93240 0.99345 1.20067 1.01245 0.98106 1.08033 1.17289 0.96025 0.84308 0.95793 1.42711 1.04958 1.25044 1.60049 1.15855 0.83160 0.81582 0.78854 1.90962 1.53985 1.44740 1.53998 1.47319 1.07598 1.16175 1.66849 1.22193 0.81154 1.03223 0.96073 1.23128 0.95123 0.89593 0.95256 1.87937 1.16087 1.35453 1.90500 1.22975 0.83205 1.01828 0.95024 1.22296 0.93918 0.91415 0.97058 1.21257 1.03431 0.91566 1.05873 0.91178 0.86347 0.88942 0.89331 0.77160 0.91023 0.87796 0.92448 0.87630 0.92454 0.87687 0.89543 0.90511 0.86909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.59 10.94 55.55 0.61 -20.99 16 2 C 0.07 1.90 5.31 -17.34 -0.09 1.81 16 3 Si 0.91 19.61 29.56 -169.99 -5.03 14.58 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 7 C -0.46 -12.96 9.04 -37.74 -0.34 -13.30 16 8 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 9 C 0.12 3.32 5.51 -106.85 -0.59 2.73 16 10 C -0.16 -4.21 8.63 -38.84 -0.34 -4.55 16 11 C -0.10 -2.27 10.02 -39.69 -0.40 -2.67 16 12 C -0.25 -5.59 9.97 -39.10 -0.39 -5.98 16 13 C 0.16 3.64 6.28 -83.76 -0.53 3.11 16 14 N -0.68 -12.53 5.24 -14.27 -0.07 -12.61 16 15 C 0.70 13.26 8.15 -86.92 -0.71 12.55 16 16 O -0.56 -13.08 13.31 5.29 0.07 -13.01 16 17 N -0.64 -8.94 3.01 -177.74 -0.54 -9.47 16 18 C 0.10 1.17 6.65 -3.31 -0.02 1.15 16 19 C 0.05 0.46 7.00 37.53 0.26 0.72 16 20 O -0.38 -4.07 10.74 -35.23 -0.38 -4.45 16 21 C 0.05 0.42 6.99 37.31 0.26 0.68 16 22 C 0.08 0.77 6.64 -3.54 -0.02 0.75 16 23 C -0.20 -5.28 8.43 -38.69 -0.33 -5.61 16 24 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 25 H 0.12 3.23 6.43 -52.49 -0.34 2.89 16 26 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 27 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 28 H 0.39 5.66 6.35 -40.82 -0.26 5.40 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.10 1.41 7.12 -51.93 -0.37 1.04 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.76 5.65 -51.93 -0.29 0.46 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.11 3.11 6.25 -52.49 -0.33 2.78 16 LS Contribution 305.64 15.07 4.61 4.61 Total: -1.00 -32.47 305.64 -8.47 -40.94 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -4.52 Total: 8.99 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -3.23 Total: -8.60 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.00 Total: -43.07 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.31 Total: -17.46 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.47 -8.47 -40.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313447226.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.547 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds