Wall clock time and date at job start Mon Mar 30 2020 02:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86796 * 120.00601 * 2 1 4 4 H 1.48504 * 109.47171 * 264.99967 * 3 2 1 5 5 H 1.48498 * 109.47059 * 24.99576 * 3 2 1 6 6 H 1.48498 * 109.47502 * 144.99826 * 3 2 1 7 7 C 1.39938 * 119.99657 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00110 * 185.91581 * 7 2 1 9 9 C 1.41410 * 120.00033 * 5.91410 * 7 2 1 10 10 C 1.40776 * 120.20713 * 33.70136 * 9 7 2 11 11 C 1.37641 * 119.88419 * 179.97438 * 10 9 7 12 12 C 1.38536 * 120.32027 * 0.02562 * 11 10 9 13 13 C 1.39249 * 120.42745 * 359.97438 * 12 11 10 14 14 N 1.39949 * 119.94385 * 179.72443 * 13 12 11 15 15 C 1.34779 * 120.00161 * 144.68531 * 14 13 12 16 16 O 1.21588 * 119.99902 * 4.09193 * 15 14 13 17 17 N 1.34775 * 120.00138 * 184.09715 * 15 14 13 18 18 C 1.47155 * 120.98159 * 185.10511 * 17 15 14 19 19 C 1.53716 * 108.16097 * 129.42858 * 18 17 15 20 20 O 1.42961 * 109.14390 * 52.54002 * 19 18 17 21 21 C 1.42962 * 114.17098 * 297.28804 * 20 19 18 22 22 C 1.47146 * 120.98453 * 5.38892 * 17 15 14 23 23 C 1.38277 * 120.10601 * 359.97438 * 13 12 11 24 24 H 0.97005 * 119.99498 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.06082 * 359.97438 * 10 9 7 26 26 H 1.07997 * 119.84098 * 179.97438 * 11 10 9 27 27 H 1.07997 * 119.78407 * 179.97438 * 12 11 10 28 28 H 0.97001 * 120.00011 * 324.67751 * 14 13 12 29 29 H 1.08997 * 109.68267 * 249.21009 * 18 17 15 30 30 H 1.09003 * 109.68234 * 9.76797 * 18 17 15 31 31 H 1.08993 * 109.66145 * 292.57504 * 19 18 17 32 32 H 1.08997 * 109.48549 * 172.40178 * 19 18 17 33 33 H 1.08999 * 109.51022 * 302.66174 * 21 20 19 34 34 H 1.08998 * 109.55511 * 182.53001 * 21 20 19 35 35 H 1.09003 * 109.68019 * 350.23529 * 22 17 15 36 36 H 1.08998 * 109.68405 * 110.78649 * 22 17 15 37 37 H 1.07995 * 120.15925 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.5956 1.9853 -1.3948 5 1 1.3911 2.6808 0.5916 6 1 3.4831 1.4728 0.8031 7 6 2.0079 -1.2119 0.0005 8 1 3.0835 -1.2145 0.0969 9 6 1.3064 -2.4333 -0.1251 10 6 0.1411 -2.5032 -0.9119 11 6 -0.5362 -3.6956 -1.0300 12 6 -0.0770 -4.8283 -0.3777 13 6 1.0741 -4.7741 0.4039 14 7 1.5256 -5.9231 1.0631 15 6 2.8478 -6.1454 1.2008 16 8 3.6473 -5.3127 0.8189 17 7 3.2838 -7.2907 1.7617 18 6 4.7153 -7.5085 2.0244 19 6 4.8710 -7.9597 3.4856 20 8 4.0053 -9.0712 3.7278 21 6 2.6151 -8.7746 3.5753 22 6 2.3433 -8.3628 2.1239 23 6 1.7689 -3.5856 0.5340 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2208 -1.6227 -1.4219 26 1 -1.4303 -3.7483 -1.6334 27 1 -0.6155 -5.7593 -0.4760 28 1 0.8870 -6.5595 1.4210 29 1 5.0979 -8.2799 1.3562 30 1 5.2632 -6.5796 1.8655 31 1 4.6060 -7.1396 4.1528 32 1 5.9041 -8.2566 3.6663 33 1 2.3418 -7.9575 4.2428 34 1 2.0247 -9.6576 3.8199 35 1 1.3196 -8.0000 2.0308 36 1 2.4912 -9.2188 1.4655 37 1 2.6615 -3.5425 1.1403 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313447226.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:16 Heat of formation + Delta-G solvation = -58.179102 kcal Electronic energy + Delta-G solvation = -21094.340662 eV Core-core repulsion = 17836.085053 eV Total energy + Delta-G solvation = -3258.255609 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.83678 -39.95921 -38.86337 -36.26208 -35.87582 -34.77699 -32.37839 -31.72179 -30.20505 -28.41877 -27.22375 -25.20058 -23.94272 -22.82956 -22.38785 -20.72787 -19.86717 -19.06435 -17.65920 -17.27534 -17.03160 -16.93496 -16.47842 -16.18477 -16.05589 -15.84162 -15.34229 -15.06125 -14.67256 -14.51567 -13.99157 -13.58106 -13.48514 -12.98425 -12.91599 -12.88750 -12.76575 -12.40133 -12.18244 -12.06170 -11.72527 -11.53007 -11.23426 -11.22103 -11.02134 -10.73977 -9.67956 -9.32017 -8.73324 -8.52202 -6.39516 0.90698 1.01098 1.36303 1.44138 1.48904 1.50977 2.07769 2.23134 2.77961 2.81895 2.84294 3.69270 3.71453 3.92533 4.03915 4.08844 4.24453 4.43055 4.47998 4.61367 4.63552 4.72735 4.80038 4.90367 5.01945 5.11270 5.12236 5.13150 5.31679 5.40322 5.65595 5.82001 5.97611 6.06634 6.06981 6.14066 6.37529 6.69687 6.86433 6.95929 7.01404 7.48253 8.41689 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.026316 B = 0.004248 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.755212 B = 6589.747213 C = 7337.883903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.035 3.965 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.267 1.267 7 C -0.508 4.508 8 H 0.060 0.940 9 C 0.088 3.912 10 C -0.183 4.183 11 C -0.094 4.094 12 C -0.238 4.238 13 C 0.165 3.835 14 N -0.668 5.668 15 C 0.697 3.303 16 O -0.615 6.615 17 N -0.631 5.631 18 C 0.091 3.909 19 C 0.055 3.945 20 O -0.389 6.389 21 C 0.047 3.953 22 C 0.071 3.929 23 C -0.227 4.227 24 H 0.286 0.714 25 H 0.103 0.897 26 H 0.127 0.873 27 H 0.135 0.865 28 H 0.415 0.585 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.132 0.868 33 H 0.053 0.947 34 H 0.138 0.862 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.913 -16.418 6.363 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.178 4.178 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.186 1.186 6 H -0.191 1.191 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.085 3.915 10 C -0.203 4.203 11 C -0.113 4.113 12 C -0.259 4.259 13 C 0.071 3.929 14 N -0.318 5.318 15 C 0.399 3.601 16 O -0.494 6.494 17 N -0.370 5.370 18 C -0.032 4.032 19 C -0.023 4.023 20 O -0.307 6.307 21 C -0.030 4.030 22 C -0.051 4.051 23 C -0.248 4.248 24 H 0.097 0.903 25 H 0.121 0.879 26 H 0.145 0.855 27 H 0.153 0.847 28 H 0.255 0.745 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.150 0.850 33 H 0.071 0.929 34 H 0.156 0.844 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.371 -15.913 6.175 17.233 hybrid contribution 0.038 1.037 0.021 1.037 sum 2.409 -14.876 6.196 16.294 Atomic orbital electron populations 1.69825 1.08428 1.30135 1.38058 1.26632 0.95770 1.03942 0.91429 0.85202 0.78665 0.76045 0.79630 1.18447 1.18647 1.19145 1.19681 0.94526 0.91772 1.47899 0.92218 1.17852 0.92462 0.92315 0.88864 1.21323 0.99147 0.97275 1.02577 1.20864 0.99028 0.92362 0.99039 1.20510 1.00313 0.99406 1.05708 1.17355 0.95635 0.84588 0.95307 1.42453 1.05544 1.24129 1.59718 1.16094 0.82739 0.82397 0.78872 1.90938 1.55237 1.47022 1.56247 1.47392 1.09137 1.15385 1.65103 1.22381 0.79943 1.02635 0.98201 1.23118 0.96603 0.89407 0.93123 1.87938 1.16926 1.35529 1.90347 1.23152 0.82775 1.03223 0.93859 1.22655 0.93664 0.90501 0.98324 1.21189 1.03566 0.93171 1.06914 0.90323 0.87932 0.85525 0.84714 0.74514 0.89466 0.90109 0.93262 0.85033 0.92908 0.84390 0.88117 0.88706 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.75 10.94 21.82 0.24 -45.51 16 2 C 0.03 1.88 5.31 85.25 0.45 2.33 16 3 Si 0.98 41.28 29.56 68.60 2.03 43.31 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 7 C -0.51 -30.20 9.04 23.46 0.21 -29.99 16 8 H 0.06 3.58 7.85 -2.91 -0.02 3.56 16 9 C 0.09 5.14 5.51 -21.31 -0.12 5.02 16 10 C -0.18 -9.95 8.63 22.75 0.20 -9.75 16 11 C -0.09 -4.28 10.02 22.20 0.22 -4.05 16 12 C -0.24 -9.91 9.97 22.58 0.23 -9.68 16 13 C 0.16 7.53 6.28 38.10 0.24 7.77 16 14 N -0.67 -23.77 5.24 -317.33 -1.66 -25.43 16 15 C 0.70 26.26 8.15 179.05 1.46 27.71 16 16 O -0.62 -29.96 13.31 -3.99 -0.05 -30.01 16 17 N -0.63 -16.85 3.01 -834.52 -2.52 -19.36 16 18 C 0.09 2.14 6.65 86.50 0.57 2.71 16 19 C 0.05 1.00 7.00 72.22 0.51 1.50 16 20 O -0.39 -7.15 10.74 -148.98 -1.60 -8.75 16 21 C 0.05 0.68 6.99 72.08 0.50 1.18 16 22 C 0.07 1.19 6.64 86.36 0.57 1.76 16 23 C -0.23 -12.54 8.43 22.85 0.19 -12.35 16 24 H 0.29 14.10 8.30 -92.70 -0.77 13.33 16 25 H 0.10 5.79 6.43 -2.91 -0.02 5.77 16 26 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 27 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 28 H 0.41 10.71 6.35 -92.71 -0.59 10.12 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.08 2.29 7.12 -2.39 -0.02 2.27 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 1.38 5.65 -2.39 -0.01 1.36 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 5.20 6.25 -2.91 -0.02 5.18 16 Total: -1.00 -75.19 305.64 2.18 -73.00 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.51 Total: 28.57 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 5.24 Total: -15.82 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -3.94 Total: -90.30 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -1.65 Total: -38.76 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -75.19 2.18 -73.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313447226.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.823 kcal (2) G-P(sol) polarization free energy of solvation -75.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds