Wall clock time and date at job start Mon Mar 30 2020 02:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86804 * 120.00277 * 2 1 4 4 H 1.48499 * 109.46915 * 274.98923 * 3 2 1 5 5 H 1.48505 * 109.46871 * 34.98842 * 3 2 1 6 6 H 1.48496 * 109.47292 * 154.98621 * 3 2 1 7 7 C 1.39929 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99823 * 151.89497 * 7 2 1 9 9 C 1.41409 * 119.99997 * 331.88941 * 7 2 1 10 10 C 1.40772 * 120.21062 * 337.89642 * 9 7 2 11 11 C 1.37639 * 119.88482 * 179.97438 * 10 9 7 12 12 C 1.38530 * 120.32282 * 359.71722 * 11 10 9 13 13 C 1.39254 * 120.42651 * 0.55863 * 12 11 10 14 14 N 1.39950 * 119.94669 * 179.71966 * 13 12 11 15 15 C 1.34780 * 120.00246 * 320.99302 * 14 13 12 16 16 O 1.21583 * 119.99617 * 354.64391 * 15 14 13 17 17 N 1.34776 * 119.99893 * 174.64091 * 15 14 13 18 18 C 1.46501 * 119.99730 * 180.02562 * 17 15 14 19 19 H 1.08999 * 110.45870 * 32.39148 * 18 17 15 20 20 C 1.54513 * 110.51176 * 155.00089 * 18 17 15 21 21 C 1.54482 * 104.18235 * 118.57524 * 20 18 17 22 22 O 1.44644 * 104.69741 * 336.18360 * 21 20 18 23 23 C 1.44426 * 105.36503 * 40.35161 * 22 21 20 24 24 C 1.38267 * 120.10330 * 359.44486 * 13 12 11 25 25 H 0.97000 * 119.99846 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.05711 * 359.97438 * 10 9 7 27 27 H 1.08003 * 119.84374 * 180.02562 * 11 10 9 28 28 H 1.08002 * 119.79154 * 180.29303 * 12 11 10 29 29 H 0.96999 * 119.99779 * 140.99487 * 14 13 12 30 30 H 0.96995 * 120.00406 * 359.97438 * 17 15 14 31 31 H 1.09001 * 110.50762 * 237.28649 * 20 18 17 32 32 H 1.09002 * 110.51101 * 359.85952 * 20 18 17 33 33 H 1.08992 * 110.37600 * 94.92341 * 21 20 18 34 34 H 1.09000 * 110.36792 * 217.25804 * 21 20 18 35 35 H 1.09004 * 110.37214 * 200.72936 * 23 22 21 36 36 H 1.09002 * 110.37280 * 78.39454 * 23 22 21 37 37 H 1.08002 * 120.16153 * 180.25613 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3845 2.1072 -1.3948 5 1 1.4965 2.6200 0.8029 6 1 3.5886 1.4120 0.5920 7 6 2.0079 -1.2118 -0.0005 8 1 2.9924 -1.2668 -0.4412 9 6 1.4260 -2.3645 0.5760 10 6 0.4027 -2.2375 1.5343 11 6 -0.1594 -3.3640 2.0908 12 6 0.2728 -4.6232 1.7081 13 6 1.2880 -4.7641 0.7654 14 7 1.7209 -6.0411 0.3904 15 6 1.8286 -7.0150 1.3159 16 8 1.6441 -6.7605 2.4904 17 7 2.1406 -8.2709 0.9394 18 6 2.2571 -9.3296 1.9453 19 1 1.5647 -9.1512 2.7680 20 6 1.9962 -10.7128 1.3082 21 6 3.3201 -11.4813 1.5166 22 8 4.3245 -10.4502 1.6580 23 6 3.7084 -9.4240 2.4662 24 6 1.8651 -3.6445 0.1951 25 1 -0.4850 0.8401 -0.0004 26 1 0.0593 -1.2579 1.8325 27 1 -0.9447 -3.2658 2.8257 28 1 -0.1775 -5.5014 2.1468 29 1 1.9435 -6.2252 -0.5355 30 1 2.2874 -8.4740 0.0024 31 1 1.1764 -11.2193 1.8176 32 1 1.7781 -10.6088 0.2453 33 1 3.2689 -12.0871 2.4212 34 1 3.5353 -12.1078 0.6510 35 1 4.2233 -8.4730 2.3293 36 1 3.7163 -9.7129 3.5172 37 1 2.6497 -3.7528 -0.5391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313447775.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:45 Heat of formation + Delta-G solvation = -52.572796 kcal Electronic energy + Delta-G solvation = -20557.252184 eV Core-core repulsion = 17299.239682 eV Total energy + Delta-G solvation = -3258.012502 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.33611 -39.10491 -37.26354 -34.63959 -34.21675 -33.07678 -31.05062 -29.82991 -28.96497 -27.61933 -25.20229 -23.35737 -22.10591 -21.03452 -20.78682 -20.08623 -18.13929 -17.68223 -16.76905 -16.33971 -15.77736 -15.39428 -15.01652 -14.87982 -14.53958 -14.32307 -13.86456 -13.31324 -12.96817 -12.88586 -12.29047 -12.12797 -11.94387 -11.79259 -11.61717 -11.39143 -11.30392 -11.06943 -10.67962 -10.53273 -10.17088 -10.16759 -9.70501 -9.58813 -9.26699 -8.97069 -8.82065 -7.47869 -6.90855 -6.84433 -4.31828 2.73147 2.84203 2.97948 3.08175 3.12279 3.26341 3.60895 3.78559 3.93633 4.27357 4.51436 4.59349 4.62548 4.75455 4.89900 5.13393 5.36883 5.37601 5.53958 5.64133 5.70936 5.74237 6.29370 6.45475 6.58273 6.59148 6.76528 6.87645 6.95399 7.03592 7.19627 7.38342 7.63518 7.83856 8.02245 8.08354 8.25035 8.41499 8.61700 8.87676 8.92859 9.03687 10.12591 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.042537 B = 0.003283 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.088115 B = 8527.478063 C = 8844.808832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.085 3.915 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.470 4.470 8 H 0.079 0.921 9 C 0.126 3.874 10 C -0.178 4.178 11 C -0.090 4.090 12 C -0.229 4.229 13 C 0.175 3.825 14 N -0.681 5.681 15 C 0.700 3.300 16 O -0.573 6.573 17 N -0.742 5.742 18 C 0.134 3.866 19 H 0.106 0.894 20 C -0.163 4.163 21 C 0.044 3.956 22 O -0.376 6.376 23 C 0.032 3.968 24 C -0.249 4.249 25 H 0.282 0.718 26 H 0.109 0.891 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.396 0.604 30 H 0.395 0.605 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.809 -16.392 -0.113 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.499 4.499 8 H 0.097 0.903 9 C 0.123 3.877 10 C -0.197 4.197 11 C -0.109 4.109 12 C -0.250 4.250 13 C 0.083 3.917 14 N -0.328 5.328 15 C 0.400 3.600 16 O -0.449 6.449 17 N -0.399 5.399 18 C 0.027 3.973 19 H 0.124 0.876 20 C -0.201 4.201 21 C -0.033 4.033 22 O -0.295 6.295 23 C -0.046 4.046 24 C -0.271 4.271 25 H 0.092 0.908 26 H 0.127 0.873 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.230 0.770 30 H 0.229 0.771 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.620 -16.033 0.877 16.269 hybrid contribution 0.262 0.569 -0.879 1.079 sum 2.882 -15.464 -0.002 15.730 Atomic orbital electron populations 1.69903 1.07889 1.29556 1.32945 1.25887 0.94442 1.01332 0.91805 0.86469 0.81304 0.80949 0.79046 1.19599 1.19964 1.18251 1.19466 1.02962 0.92831 1.34619 0.90300 1.17306 0.90067 0.91079 0.89236 1.21161 1.01599 0.96994 0.99960 1.20514 0.98825 0.92678 0.98912 1.20192 1.02316 0.96502 1.05992 1.17185 0.94865 0.81092 0.98566 1.42618 1.69999 1.09894 1.10245 1.15987 0.78122 0.80321 0.85538 1.90945 1.56584 1.81348 1.16000 1.45190 1.77095 1.07422 1.10158 1.22095 0.97440 0.85810 0.91921 0.87631 1.23271 0.99103 0.95033 1.02680 1.23461 0.86826 0.91326 1.01727 1.89188 1.37040 1.30968 1.72265 1.23980 0.93150 0.92628 0.94831 1.20641 1.06886 0.91370 1.08206 0.90761 0.87261 0.89129 0.88628 0.77022 0.77081 0.89337 0.89841 0.92018 0.88944 0.88400 0.91301 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.02 11.48 55.55 0.64 -19.38 16 2 C 0.09 2.14 4.90 -17.34 -0.08 2.05 16 3 Si 0.90 18.49 29.64 -169.99 -5.04 13.46 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.47 -12.48 8.99 -37.74 -0.34 -12.81 16 8 H 0.08 2.02 7.98 -52.48 -0.42 1.60 16 9 C 0.13 3.39 5.57 -106.85 -0.60 2.80 16 10 C -0.18 -4.70 8.76 -38.84 -0.34 -5.04 16 11 C -0.09 -2.23 10.02 -39.69 -0.40 -2.62 16 12 C -0.23 -5.55 8.66 -39.10 -0.34 -5.89 16 13 C 0.17 4.03 6.15 -83.76 -0.52 3.52 16 14 N -0.68 -12.38 5.33 -14.27 -0.08 -12.45 16 15 C 0.70 12.40 8.26 -86.92 -0.72 11.68 16 16 O -0.57 -12.51 14.07 5.29 0.07 -12.43 16 17 N -0.74 -9.31 5.09 -57.14 -0.29 -9.61 16 18 C 0.13 1.48 3.48 -66.36 -0.23 1.25 16 19 H 0.11 1.30 7.55 -51.93 -0.39 0.91 16 20 C -0.16 -1.23 6.84 -25.16 -0.17 -1.40 16 21 C 0.04 0.34 7.65 37.94 0.29 0.63 16 22 O -0.38 -4.28 11.65 -35.23 -0.41 -4.69 16 23 C 0.03 0.37 7.36 37.93 0.28 0.65 16 24 C -0.25 -6.13 9.71 -38.69 -0.38 -6.50 16 25 H 0.28 6.53 8.30 -40.82 -0.34 6.20 16 26 H 0.11 2.94 6.38 -52.49 -0.33 2.61 16 27 H 0.09 2.01 8.06 -52.48 -0.42 1.59 16 28 H 0.10 2.29 6.83 -52.49 -0.36 1.93 16 29 H 0.40 5.74 8.84 -40.82 -0.36 5.38 16 30 H 0.40 3.88 8.40 -40.82 -0.34 3.54 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.57 7.70 -51.93 -0.40 0.17 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.10 1.29 8.06 -51.93 -0.42 0.88 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 313.64 15.07 4.73 4.73 Total: -1.00 -31.56 313.64 -8.61 -40.18 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -4.70 Total: 11.92 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -3.54 Total: -11.71 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.27 Total: -41.44 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.34 Total: -17.12 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.04 Total: 13.46 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.56 -8.61 -40.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313447775.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.396 kcal (2) G-P(sol) polarization free energy of solvation -31.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds