Wall clock time and date at job start Mon Mar 30 2020 02:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86804 * 120.00277 * 2 1 4 4 H 1.48499 * 109.46915 * 274.98923 * 3 2 1 5 5 H 1.48505 * 109.46871 * 34.98842 * 3 2 1 6 6 H 1.48496 * 109.47292 * 154.98621 * 3 2 1 7 7 C 1.39929 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99823 * 151.89497 * 7 2 1 9 9 C 1.41409 * 119.99997 * 331.88941 * 7 2 1 10 10 C 1.40772 * 120.21062 * 337.89642 * 9 7 2 11 11 C 1.37639 * 119.88482 * 179.97438 * 10 9 7 12 12 C 1.38530 * 120.32282 * 359.71722 * 11 10 9 13 13 C 1.39254 * 120.42651 * 0.55863 * 12 11 10 14 14 N 1.39950 * 119.94669 * 179.71966 * 13 12 11 15 15 C 1.34780 * 120.00246 * 320.99302 * 14 13 12 16 16 O 1.21583 * 119.99617 * 354.64391 * 15 14 13 17 17 N 1.34776 * 119.99893 * 174.64091 * 15 14 13 18 18 C 1.46501 * 119.99730 * 180.02562 * 17 15 14 19 19 H 1.08999 * 110.45870 * 32.39148 * 18 17 15 20 20 C 1.54513 * 110.51176 * 155.00089 * 18 17 15 21 21 C 1.54482 * 104.18235 * 118.57524 * 20 18 17 22 22 O 1.44644 * 104.69741 * 336.18360 * 21 20 18 23 23 C 1.44426 * 105.36503 * 40.35161 * 22 21 20 24 24 C 1.38267 * 120.10330 * 359.44486 * 13 12 11 25 25 H 0.97000 * 119.99846 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.05711 * 359.97438 * 10 9 7 27 27 H 1.08003 * 119.84374 * 180.02562 * 11 10 9 28 28 H 1.08002 * 119.79154 * 180.29303 * 12 11 10 29 29 H 0.96999 * 119.99779 * 140.99487 * 14 13 12 30 30 H 0.96995 * 120.00406 * 359.97438 * 17 15 14 31 31 H 1.09001 * 110.50762 * 237.28649 * 20 18 17 32 32 H 1.09002 * 110.51101 * 359.85952 * 20 18 17 33 33 H 1.08992 * 110.37600 * 94.92341 * 21 20 18 34 34 H 1.09000 * 110.36792 * 217.25804 * 21 20 18 35 35 H 1.09004 * 110.37214 * 200.72936 * 23 22 21 36 36 H 1.09002 * 110.37280 * 78.39454 * 23 22 21 37 37 H 1.08002 * 120.16153 * 180.25613 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3845 2.1072 -1.3948 5 1 1.4965 2.6200 0.8029 6 1 3.5886 1.4120 0.5920 7 6 2.0079 -1.2118 -0.0005 8 1 2.9924 -1.2668 -0.4412 9 6 1.4260 -2.3645 0.5760 10 6 0.4027 -2.2375 1.5343 11 6 -0.1594 -3.3640 2.0908 12 6 0.2728 -4.6232 1.7081 13 6 1.2880 -4.7641 0.7654 14 7 1.7209 -6.0411 0.3904 15 6 1.8286 -7.0150 1.3159 16 8 1.6441 -6.7605 2.4904 17 7 2.1406 -8.2709 0.9394 18 6 2.2571 -9.3296 1.9453 19 1 1.5647 -9.1512 2.7680 20 6 1.9962 -10.7128 1.3082 21 6 3.3201 -11.4813 1.5166 22 8 4.3245 -10.4502 1.6580 23 6 3.7084 -9.4240 2.4662 24 6 1.8651 -3.6445 0.1951 25 1 -0.4850 0.8401 -0.0004 26 1 0.0593 -1.2579 1.8325 27 1 -0.9447 -3.2658 2.8257 28 1 -0.1775 -5.5014 2.1468 29 1 1.9435 -6.2252 -0.5355 30 1 2.2874 -8.4740 0.0024 31 1 1.1764 -11.2193 1.8176 32 1 1.7781 -10.6088 0.2453 33 1 3.2689 -12.0871 2.4212 34 1 3.5353 -12.1078 0.6510 35 1 4.2233 -8.4730 2.3293 36 1 3.7163 -9.7129 3.5172 37 1 2.6497 -3.7528 -0.5391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313447775.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:45 Heat of formation + Delta-G solvation = -74.354546 kcal Electronic energy + Delta-G solvation = -20558.196712 eV Core-core repulsion = 17299.239682 eV Total energy + Delta-G solvation = -3258.957029 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.60971 -40.21558 -38.99737 -36.21709 -35.55738 -34.84541 -31.96531 -31.77461 -30.15730 -29.03741 -27.15395 -24.35796 -23.31262 -22.77488 -22.02909 -21.64552 -19.51177 -19.44215 -17.86149 -17.39015 -17.15577 -16.73600 -16.56749 -16.24059 -16.07803 -15.78226 -15.09633 -14.86439 -14.66364 -14.11500 -13.88613 -13.52527 -13.27113 -12.97551 -12.78771 -12.75771 -12.53112 -12.49397 -12.31449 -12.00144 -11.88912 -11.55885 -11.25862 -11.08641 -10.95962 -10.68494 -10.06365 -9.44650 -8.75269 -8.71847 -6.31849 0.93772 0.99861 1.39863 1.49191 1.56711 1.67464 2.13125 2.21865 2.70767 3.01479 3.24733 3.54165 3.72936 3.83541 4.11777 4.18140 4.33084 4.41786 4.59265 4.67726 4.72767 4.85639 4.94969 4.99309 5.01249 5.02465 5.13139 5.21086 5.31080 5.44976 5.73423 5.76167 5.84214 6.02980 6.07022 6.17010 6.37627 6.66851 6.92083 6.98137 7.07457 7.56009 8.27098 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.042537 B = 0.003283 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.088115 B = 8527.478063 C = 8844.808832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.047 3.953 3 Si 0.975 3.025 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.503 4.503 8 H 0.079 0.921 9 C 0.100 3.900 10 C -0.205 4.205 11 C -0.092 4.092 12 C -0.241 4.241 13 C 0.186 3.814 14 N -0.674 5.674 15 C 0.699 3.301 16 O -0.616 6.616 17 N -0.719 5.719 18 C 0.126 3.874 19 H 0.092 0.908 20 C -0.150 4.150 21 C 0.040 3.960 22 O -0.396 6.396 23 C 0.035 3.965 24 C -0.263 4.263 25 H 0.292 0.708 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.415 0.585 30 H 0.412 0.588 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.252 -17.670 -0.858 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.172 4.172 3 Si 0.795 3.205 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.531 4.531 8 H 0.097 0.903 9 C 0.097 3.903 10 C -0.225 4.225 11 C -0.111 4.111 12 C -0.262 4.262 13 C 0.093 3.907 14 N -0.323 5.323 15 C 0.400 3.600 16 O -0.495 6.495 17 N -0.376 5.376 18 C 0.020 3.980 19 H 0.110 0.890 20 C -0.188 4.188 21 C -0.037 4.037 22 O -0.315 6.315 23 C -0.044 4.044 24 C -0.285 4.285 25 H 0.102 0.898 26 H 0.114 0.886 27 H 0.128 0.872 28 H 0.116 0.884 29 H 0.252 0.748 30 H 0.249 0.751 31 H 0.127 0.873 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.130 0.870 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.074 -17.389 0.079 17.659 hybrid contribution 0.115 0.811 -0.656 1.049 sum 3.189 -16.578 -0.577 16.892 Atomic orbital electron populations 1.69924 1.09349 1.31132 1.32797 1.26742 0.95169 1.04523 0.90718 0.85317 0.79466 0.76123 0.79585 1.18309 1.18995 1.18430 1.19741 1.03350 0.94083 1.35974 0.90278 1.17677 0.90591 0.92328 0.89691 1.21112 1.03023 0.96937 1.01406 1.20749 0.98932 0.92497 0.98879 1.20329 1.02972 0.96303 1.06625 1.17178 0.93663 0.82750 0.97153 1.42416 1.69851 1.08497 1.11498 1.16130 0.77832 0.81397 0.84684 1.90918 1.58461 1.82277 1.17823 1.45042 1.75228 1.05782 1.11547 1.22294 0.97023 0.86993 0.91643 0.88961 1.23258 0.99788 0.92422 1.03373 1.23716 0.85829 0.90713 1.03406 1.89169 1.38442 1.31693 1.72238 1.23861 0.92911 0.91983 0.95598 1.20796 1.07488 0.91261 1.08937 0.89760 0.88574 0.87233 0.88397 0.74793 0.75114 0.87344 0.88559 0.90593 0.86992 0.90838 0.90284 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.01 11.48 21.82 0.25 -41.76 16 2 C 0.05 2.34 4.90 85.25 0.42 2.76 16 3 Si 0.97 37.80 29.64 68.60 2.03 39.84 16 4 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 5 H -0.27 -9.82 7.11 99.48 0.71 -9.12 16 6 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 7 C -0.50 -27.23 8.99 23.46 0.21 -27.02 16 8 H 0.08 4.12 7.98 -2.91 -0.02 4.09 16 9 C 0.10 5.52 5.57 -21.31 -0.12 5.40 16 10 C -0.20 -11.19 8.76 22.75 0.20 -10.99 16 11 C -0.09 -4.61 10.02 22.20 0.22 -4.38 16 12 C -0.24 -11.78 8.66 22.58 0.20 -11.58 16 13 C 0.19 8.60 6.15 38.10 0.23 8.84 16 14 N -0.67 -23.92 5.33 -317.33 -1.69 -25.61 16 15 C 0.70 24.21 8.26 179.05 1.48 25.69 16 16 O -0.62 -26.92 14.07 -3.98 -0.06 -26.97 16 17 N -0.72 -16.87 5.09 -452.96 -2.30 -19.17 16 18 C 0.13 2.58 3.48 46.01 0.16 2.74 16 19 H 0.09 2.19 7.55 -2.39 -0.02 2.17 16 20 C -0.15 -1.79 6.84 31.61 0.22 -1.57 16 21 C 0.04 0.49 7.65 72.49 0.55 1.04 16 22 O -0.40 -8.29 11.65 -148.98 -1.74 -10.02 16 23 C 0.03 0.76 7.36 72.48 0.53 1.29 16 24 C -0.26 -13.09 9.71 22.85 0.22 -12.86 16 25 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 26 H 0.10 5.38 6.38 -2.91 -0.02 5.36 16 27 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 28 H 0.10 4.71 6.83 -2.91 -0.02 4.69 16 29 H 0.41 11.38 8.84 -92.71 -0.82 10.56 16 30 H 0.41 7.04 8.40 -92.71 -0.78 6.26 16 31 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 0.94 7.70 -2.39 -0.02 0.92 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 34 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 1.95 8.06 -2.39 -0.02 1.94 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -69.56 313.64 0.53 -69.03 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: -0.49 Total: 35.32 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: 4.53 Total: -20.66 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -3.75 Total: -86.54 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -1.79 Total: -37.00 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.84 kcal Total: -69.56 0.53 -69.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313447775.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.325 kcal (2) G-P(sol) polarization free energy of solvation -69.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds