Wall clock time and date at job start Mon Mar 30 2020 02:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86800 * 120.00274 * 2 1 4 4 H 1.48501 * 109.46870 * 239.99878 * 3 2 1 5 5 H 1.48498 * 109.46708 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47136 * 119.99492 * 3 2 1 7 7 C 1.39934 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99951 * 168.99376 * 7 2 1 9 9 C 1.41411 * 120.00045 * 349.00235 * 7 2 1 10 10 C 1.40779 * 120.20656 * 331.77698 * 9 7 2 11 11 C 1.37645 * 119.88307 * 180.02562 * 10 9 7 12 12 C 1.38536 * 120.32009 * 0.02562 * 11 10 9 13 13 C 1.39248 * 120.42697 * 0.02562 * 12 11 10 14 14 N 1.39959 * 119.94148 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99747 * 146.38354 * 14 13 12 16 16 O 1.21587 * 120.00162 * 354.82011 * 15 14 13 17 17 N 1.34771 * 120.00119 * 174.81267 * 15 14 13 18 18 C 1.47063 * 120.81495 * 179.71752 * 17 15 14 19 19 C 1.53329 * 108.41311 * 230.64692 * 18 17 15 20 20 C 1.53140 * 109.00808 * 307.26212 * 19 18 17 21 21 C 1.53070 * 109.42722 * 59.74883 * 20 19 18 22 22 O 1.42133 * 120.81166 * 0.02562 * 17 15 14 23 23 C 1.38271 * 120.10664 * 0.22623 * 13 12 11 24 24 H 0.96998 * 119.99945 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.06017 * 0.02588 * 10 9 7 26 26 H 1.08001 * 119.84225 * 180.02562 * 11 10 9 27 27 H 1.07997 * 119.78713 * 179.97438 * 12 11 10 28 28 H 0.96995 * 119.99895 * 326.38670 * 14 13 12 29 29 H 1.09005 * 109.67453 * 350.38612 * 18 17 15 30 30 H 1.09001 * 109.67128 * 110.91375 * 18 17 15 31 31 H 1.09006 * 109.54877 * 187.40246 * 19 18 17 32 32 H 1.09004 * 109.62860 * 67.17082 * 19 18 17 33 33 H 1.09002 * 109.47829 * 299.76740 * 20 19 18 34 34 H 1.08995 * 109.48244 * 179.73858 * 20 19 18 35 35 H 1.09001 * 109.49203 * 180.02562 * 21 20 19 36 36 H 1.09007 * 109.51776 * 59.99125 * 21 20 19 37 37 H 1.07999 * 120.15446 * 179.74048 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6962 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0730 -1.2206 -0.1780 9 6 1.3203 -2.4252 0.2347 10 6 0.1512 -2.4368 1.0188 11 6 -0.5126 -3.6216 1.2429 12 6 -0.0354 -4.8039 0.7009 13 6 1.1204 -4.8077 -0.0757 14 7 1.5938 -6.0081 -0.6179 15 6 2.2074 -6.0098 -1.8178 16 8 2.2666 -4.9866 -2.4718 17 7 2.7556 -7.1457 -2.2927 18 6 3.4241 -7.1694 -3.6024 19 6 2.8553 -8.3383 -4.4154 20 6 2.9563 -9.6202 -3.5837 21 6 2.1602 -9.4500 -2.2874 22 8 2.6962 -8.3517 -1.5428 23 6 1.8040 -3.6284 -0.3078 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2244 -1.5176 1.4437 26 1 -1.4097 -3.6297 1.8441 27 1 -0.5627 -5.7287 0.8826 28 1 1.4801 -6.8387 -0.1300 29 1 3.2373 -6.2322 -4.1267 30 1 4.4968 -7.3057 -3.4645 31 1 3.4274 -8.4548 -5.3360 32 1 1.8108 -8.1420 -4.6576 33 1 4.0015 -9.8173 -3.3451 34 1 2.5495 -10.4559 -4.1530 35 1 2.2318 -10.3617 -1.6943 36 1 1.1149 -9.2525 -2.5252 37 1 2.7028 -3.6312 -0.9066 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334730922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:59 Heat of formation + Delta-G solvation = -0.316237 kcal Electronic energy + Delta-G solvation = -21090.597487 eV Core-core repulsion = 17834.851000 eV Total energy + Delta-G solvation = -3255.746487 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.13342 -38.48188 -37.04227 -34.62907 -33.86906 -32.98610 -32.64349 -29.73873 -28.43031 -26.86186 -25.23034 -24.61369 -22.13664 -20.94217 -20.49158 -19.71011 -18.27820 -17.64007 -16.80852 -15.68370 -15.34618 -15.19038 -14.79030 -14.65651 -14.52864 -14.45329 -14.07107 -13.31115 -13.25790 -12.90331 -12.76173 -12.09062 -11.68358 -11.55791 -11.42702 -11.24479 -11.06109 -10.96611 -10.66298 -10.54222 -10.44290 -10.10149 -9.71049 -9.58412 -9.15972 -8.86000 -8.70537 -7.34401 -6.79338 -6.59069 -4.27435 1.90399 2.79676 2.95730 3.13942 3.17877 3.27652 3.60182 3.69392 4.03873 4.46887 4.52886 4.57510 4.74680 4.76762 5.09288 5.09795 5.31298 5.50774 5.52343 5.69162 5.72560 5.79271 5.93295 6.30121 6.46214 6.60264 6.77596 6.86949 7.11064 7.16530 7.29816 7.38140 7.73462 7.85518 8.05770 8.16947 8.31656 8.44207 8.73357 8.91743 9.03438 9.07515 10.34086 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.028946 B = 0.004208 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.094607 B = 6652.625285 C = 7369.733732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.458 4.458 8 H 0.076 0.924 9 C 0.120 3.880 10 C -0.168 4.168 11 C -0.094 4.094 12 C -0.258 4.258 13 C 0.165 3.835 14 N -0.671 5.671 15 C 0.719 3.281 16 O -0.548 6.548 17 N -0.499 5.499 18 C 0.123 3.877 19 C -0.141 4.141 20 C -0.151 4.151 21 C 0.029 3.971 22 O -0.151 6.151 23 C -0.209 4.209 24 H 0.279 0.721 25 H 0.122 0.878 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.401 0.599 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.753 -15.848 -5.030 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.094 0.906 9 C 0.117 3.883 10 C -0.188 4.188 11 C -0.113 4.113 12 C -0.280 4.280 13 C 0.073 3.927 14 N -0.316 5.316 15 C 0.422 3.578 16 O -0.424 6.424 17 N -0.285 5.285 18 C 0.002 3.998 19 C -0.180 4.180 20 C -0.188 4.188 21 C -0.050 4.050 22 O -0.154 6.154 23 C -0.231 4.231 24 H 0.090 0.910 25 H 0.139 0.861 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.235 0.765 29 H 0.127 0.873 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.127 0.873 36 H 0.078 0.922 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.682 -14.933 -5.323 16.275 hybrid contribution 0.068 -0.124 -0.023 0.143 sum 3.750 -15.057 -5.346 16.412 Atomic orbital electron populations 1.69799 1.07396 1.28931 1.36735 1.25869 0.94817 1.01116 0.92443 0.86322 0.79977 0.80239 0.79855 1.19075 1.20428 1.18942 1.19513 0.95954 0.90426 1.42957 0.90611 1.17491 0.91401 0.91621 0.87797 1.21401 0.98924 0.96606 1.01858 1.20464 0.98351 0.92797 0.99654 1.20024 0.98962 0.97434 1.11593 1.17281 0.94154 0.83980 0.97300 1.42543 1.59727 1.10484 1.18867 1.15672 0.78394 0.81551 0.82207 1.91047 1.63779 1.28460 1.59068 1.49539 1.61143 0.98404 1.19462 1.21842 0.96188 1.00787 0.80982 1.22004 1.02589 0.94586 0.98778 1.22053 1.01694 0.98474 0.96626 1.23128 0.97512 0.89732 0.94580 1.90661 1.85316 1.10860 1.28600 1.21007 1.03171 0.91862 1.07034 0.91043 0.86070 0.89006 0.89341 0.76477 0.87270 0.90964 0.89871 0.91068 0.90651 0.90451 0.87268 0.92175 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.62 10.81 55.55 0.60 -21.02 16 2 C 0.07 1.94 5.25 -17.34 -0.09 1.85 16 3 Si 0.91 19.59 29.57 -169.99 -5.03 14.56 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.46 -12.88 9.06 -37.74 -0.34 -13.22 16 8 H 0.08 2.06 7.87 -52.49 -0.41 1.65 16 9 C 0.12 3.39 5.55 -106.85 -0.59 2.79 16 10 C -0.17 -4.52 8.66 -38.84 -0.34 -4.85 16 11 C -0.09 -2.25 10.02 -39.69 -0.40 -2.64 16 12 C -0.26 -5.93 9.97 -39.10 -0.39 -6.32 16 13 C 0.17 3.95 6.26 -83.76 -0.52 3.43 16 14 N -0.67 -13.43 5.31 -14.27 -0.08 -13.51 16 15 C 0.72 14.45 8.19 -86.93 -0.71 13.74 16 16 O -0.55 -13.13 13.50 5.29 0.07 -13.06 16 17 N -0.50 -7.74 3.60 -64.66 -0.23 -7.98 16 18 C 0.12 1.52 6.62 -3.56 -0.02 1.50 16 19 C -0.14 -1.26 6.14 -26.49 -0.16 -1.42 16 20 C -0.15 -1.15 6.06 -26.62 -0.16 -1.31 16 21 C 0.03 0.26 7.08 37.19 0.26 0.52 16 22 O -0.15 -2.00 10.72 -11.73 -0.13 -2.12 16 23 C -0.21 -5.63 8.39 -38.69 -0.32 -5.95 16 24 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 25 H 0.12 3.33 6.18 -52.49 -0.32 3.01 16 26 H 0.09 1.94 8.06 -52.49 -0.42 1.51 16 27 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 28 H 0.40 6.78 8.00 -40.82 -0.33 6.46 16 29 H 0.11 1.50 7.06 -51.93 -0.37 1.13 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.11 2.99 6.44 -52.49 -0.34 2.65 16 LS Contribution 309.07 15.07 4.66 4.66 Total: -1.00 -31.97 309.07 -8.64 -40.60 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -4.71 Total: 9.77 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -3.80 Total: -11.90 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.29 Total: -42.51 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.05 Total: -15.19 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.56 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.97 -8.64 -40.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334730922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.288 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds