Wall clock time and date at job start Mon Mar 30 2020 02:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86800 * 120.00274 * 2 1 4 4 H 1.48501 * 109.46870 * 239.99878 * 3 2 1 5 5 H 1.48498 * 109.46708 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47136 * 119.99492 * 3 2 1 7 7 C 1.39934 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99951 * 168.99376 * 7 2 1 9 9 C 1.41411 * 120.00045 * 349.00235 * 7 2 1 10 10 C 1.40779 * 120.20656 * 331.77698 * 9 7 2 11 11 C 1.37645 * 119.88307 * 180.02562 * 10 9 7 12 12 C 1.38536 * 120.32009 * 0.02562 * 11 10 9 13 13 C 1.39248 * 120.42697 * 0.02562 * 12 11 10 14 14 N 1.39959 * 119.94148 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99747 * 146.38354 * 14 13 12 16 16 O 1.21587 * 120.00162 * 354.82011 * 15 14 13 17 17 N 1.34771 * 120.00119 * 174.81267 * 15 14 13 18 18 C 1.47063 * 120.81495 * 179.71752 * 17 15 14 19 19 C 1.53329 * 108.41311 * 230.64692 * 18 17 15 20 20 C 1.53140 * 109.00808 * 307.26212 * 19 18 17 21 21 C 1.53070 * 109.42722 * 59.74883 * 20 19 18 22 22 O 1.42133 * 120.81166 * 0.02562 * 17 15 14 23 23 C 1.38271 * 120.10664 * 0.22623 * 13 12 11 24 24 H 0.96998 * 119.99945 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.06017 * 0.02588 * 10 9 7 26 26 H 1.08001 * 119.84225 * 180.02562 * 11 10 9 27 27 H 1.07997 * 119.78713 * 179.97438 * 12 11 10 28 28 H 0.96995 * 119.99895 * 326.38670 * 14 13 12 29 29 H 1.09005 * 109.67453 * 350.38612 * 18 17 15 30 30 H 1.09001 * 109.67128 * 110.91375 * 18 17 15 31 31 H 1.09006 * 109.54877 * 187.40246 * 19 18 17 32 32 H 1.09004 * 109.62860 * 67.17082 * 19 18 17 33 33 H 1.09002 * 109.47829 * 299.76740 * 20 19 18 34 34 H 1.08995 * 109.48244 * 179.73858 * 20 19 18 35 35 H 1.09001 * 109.49203 * 180.02562 * 21 20 19 36 36 H 1.09007 * 109.51776 * 59.99125 * 21 20 19 37 37 H 1.07999 * 120.15446 * 179.74048 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6962 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0730 -1.2206 -0.1780 9 6 1.3203 -2.4252 0.2347 10 6 0.1512 -2.4368 1.0188 11 6 -0.5126 -3.6216 1.2429 12 6 -0.0354 -4.8039 0.7009 13 6 1.1204 -4.8077 -0.0757 14 7 1.5938 -6.0081 -0.6179 15 6 2.2074 -6.0098 -1.8178 16 8 2.2666 -4.9866 -2.4718 17 7 2.7556 -7.1457 -2.2927 18 6 3.4241 -7.1694 -3.6024 19 6 2.8553 -8.3383 -4.4154 20 6 2.9563 -9.6202 -3.5837 21 6 2.1602 -9.4500 -2.2874 22 8 2.6962 -8.3517 -1.5428 23 6 1.8040 -3.6284 -0.3078 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2244 -1.5176 1.4437 26 1 -1.4097 -3.6297 1.8441 27 1 -0.5627 -5.7287 0.8826 28 1 1.4801 -6.8387 -0.1300 29 1 3.2373 -6.2322 -4.1267 30 1 4.4968 -7.3057 -3.4645 31 1 3.4274 -8.4548 -5.3360 32 1 1.8108 -8.1420 -4.6576 33 1 4.0015 -9.8173 -3.3451 34 1 2.5495 -10.4559 -4.1530 35 1 2.2318 -10.3617 -1.6943 36 1 1.1149 -9.2525 -2.5252 37 1 2.7028 -3.6312 -0.9066 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334730922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:58 Heat of formation + Delta-G solvation = -20.370275 kcal Electronic energy + Delta-G solvation = -21091.467096 eV Core-core repulsion = 17834.851000 eV Total energy + Delta-G solvation = -3256.616096 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.60674 -39.79605 -38.77037 -36.32045 -35.11854 -34.57825 -33.88571 -31.73751 -30.08921 -28.04963 -27.22983 -25.54314 -23.60882 -22.79217 -22.02225 -20.91064 -19.80236 -19.43565 -18.02554 -17.42243 -16.77735 -16.65275 -16.40778 -16.01701 -15.92950 -15.57493 -15.21339 -14.88596 -14.69831 -14.27434 -14.07661 -13.90735 -13.57946 -13.11928 -12.81733 -12.60800 -12.37229 -12.21609 -12.15450 -12.03286 -11.72033 -11.61575 -11.52939 -11.25203 -11.04624 -10.74456 -9.96152 -9.35800 -8.68814 -8.55591 -6.37083 0.71062 0.93161 1.03080 1.37542 1.49936 1.52276 1.99883 2.22624 2.27189 2.77562 3.65764 3.74278 3.77088 3.83205 3.87836 4.24581 4.40097 4.47042 4.58057 4.62542 4.75543 4.76695 4.95931 5.00875 5.05226 5.10812 5.13278 5.17468 5.24480 5.33777 5.47092 5.65815 5.82228 6.01955 6.10019 6.13744 6.36797 6.69674 6.88359 6.95802 7.01861 7.40162 8.39183 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.028946 B = 0.004208 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.094607 B = 6652.625285 C = 7369.733732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.033 3.967 3 Si 0.986 3.014 4 H -0.266 1.266 5 H -0.262 1.262 6 H -0.257 1.257 7 C -0.502 4.502 8 H 0.066 0.934 9 C 0.090 3.910 10 C -0.192 4.192 11 C -0.090 4.090 12 C -0.248 4.248 13 C 0.171 3.829 14 N -0.663 5.663 15 C 0.712 3.288 16 O -0.598 6.598 17 N -0.493 5.493 18 C 0.114 3.886 19 C -0.135 4.135 20 C -0.145 4.145 21 C 0.017 3.983 22 O -0.158 6.158 23 C -0.235 4.235 24 H 0.288 0.712 25 H 0.108 0.892 26 H 0.126 0.874 27 H 0.130 0.870 28 H 0.417 0.583 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.143 0.857 36 H 0.057 0.943 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.529 -18.129 -5.111 19.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.186 1.186 6 H -0.181 1.181 7 C -0.532 4.532 8 H 0.084 0.916 9 C 0.087 3.913 10 C -0.212 4.212 11 C -0.109 4.109 12 C -0.270 4.270 13 C 0.077 3.923 14 N -0.311 5.311 15 C 0.415 3.585 16 O -0.477 6.477 17 N -0.277 5.277 18 C -0.006 4.006 19 C -0.173 4.173 20 C -0.183 4.183 21 C -0.060 4.060 22 O -0.162 6.162 23 C -0.257 4.257 24 H 0.098 0.902 25 H 0.126 0.874 26 H 0.144 0.856 27 H 0.147 0.853 28 H 0.255 0.745 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.128 0.872 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.124 0.876 35 H 0.161 0.839 36 H 0.075 0.925 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.467 -17.310 -5.414 18.465 hybrid contribution 0.117 0.321 -0.031 0.343 sum 3.584 -16.989 -5.444 18.197 Atomic orbital electron populations 1.69849 1.08726 1.30384 1.36814 1.26733 0.95715 1.04310 0.91267 0.85204 0.78710 0.75534 0.79887 1.19049 1.18617 1.18141 1.19743 0.95872 0.92012 1.45613 0.91619 1.17833 0.92492 0.92277 0.88666 1.21374 0.99413 0.97462 1.02959 1.20842 0.98874 0.92032 0.99125 1.20435 0.98067 0.98717 1.09746 1.17366 0.93934 0.84435 0.96582 1.42341 1.59736 1.09880 1.19100 1.15819 0.78360 0.82352 0.81935 1.91014 1.65434 1.30944 1.60260 1.49325 1.59548 0.98774 1.20070 1.22132 0.97088 1.01560 0.79818 1.22004 1.02145 0.93689 0.99460 1.22060 1.02103 0.98376 0.95716 1.23538 0.97469 0.89089 0.95862 1.90652 1.85795 1.10402 1.29317 1.20948 1.03436 0.93230 1.08104 0.90173 0.87364 0.85600 0.85251 0.74516 0.89538 0.89401 0.87200 0.92039 0.89888 0.87646 0.83913 0.92453 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.00 10.81 21.82 0.24 -45.77 16 2 C 0.03 1.80 5.25 85.25 0.45 2.25 16 3 Si 0.99 41.06 29.57 68.60 2.03 43.09 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.50 -29.83 9.06 23.46 0.21 -29.62 16 8 H 0.07 3.85 7.87 -2.91 -0.02 3.82 16 9 C 0.09 5.34 5.55 -21.31 -0.12 5.22 16 10 C -0.19 -10.61 8.66 22.75 0.20 -10.41 16 11 C -0.09 -4.23 10.02 22.20 0.22 -4.01 16 12 C -0.25 -10.98 9.97 22.58 0.23 -10.75 16 13 C 0.17 8.22 6.26 38.09 0.24 8.46 16 14 N -0.66 -26.40 5.31 -317.33 -1.69 -28.09 16 15 C 0.71 29.20 8.19 179.06 1.47 30.66 16 16 O -0.60 -30.11 13.50 -3.99 -0.05 -30.17 16 17 N -0.49 -15.04 3.60 -476.74 -1.72 -16.75 16 18 C 0.11 2.75 6.62 86.38 0.57 3.32 16 19 C -0.13 -2.09 6.14 30.75 0.19 -1.91 16 20 C -0.14 -1.67 6.06 30.66 0.19 -1.48 16 21 C 0.02 0.26 7.08 72.01 0.51 0.77 16 22 O -0.16 -3.85 10.72 -39.99 -0.43 -4.27 16 23 C -0.24 -13.30 8.39 22.85 0.19 -13.11 16 24 H 0.29 14.33 8.30 -92.71 -0.77 13.56 16 25 H 0.11 6.16 6.18 -2.91 -0.02 6.14 16 26 H 0.13 4.99 8.06 -2.91 -0.02 4.96 16 27 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 28 H 0.42 13.47 8.00 -92.71 -0.74 12.72 16 29 H 0.09 2.48 7.06 -2.38 -0.02 2.46 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.08 5.08 6.44 -2.91 -0.02 5.06 16 Total: -1.00 -74.00 309.07 3.27 -70.73 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: 0.35 Total: 31.84 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: 4.54 Total: -20.61 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -3.17 Total: -90.60 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -0.48 Total: -34.44 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -74.00 3.27 -70.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334730922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.358 kcal (2) G-P(sol) polarization free energy of solvation -73.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds