Wall clock time and date at job start Mon Mar 30 2020 01:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86800 * 120.00282 * 2 1 4 4 H 1.48506 * 109.47025 * 240.00212 * 3 2 1 5 5 H 1.48498 * 109.46803 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47661 * 119.99701 * 3 2 1 7 7 C 1.37881 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00434 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99562 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47340 * 179.97438 * 9 7 2 11 11 C 1.34770 * 120.00348 * 180.02562 * 10 9 7 12 12 O 1.21585 * 120.00368 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99760 * 180.02562 * 11 10 9 14 14 C 1.46509 * 119.99877 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.37450 * 34.85144 * 14 13 11 16 16 C 1.52975 * 109.42185 * 275.00006 * 14 13 11 17 17 O 1.43215 * 108.63450 * 190.77922 * 16 14 13 18 18 C 1.42718 * 113.13927 * 70.59573 * 17 16 14 19 19 C 1.50655 * 110.27466 * 308.30668 * 18 17 16 20 20 C 1.38648 * 118.71333 * 195.86180 * 19 18 17 21 21 C 1.38053 * 120.29724 * 180.17179 * 20 19 18 22 22 C 1.38253 * 119.90304 * 0.03484 * 21 20 19 23 23 C 1.38075 * 119.85902 * 359.90023 * 22 21 20 24 24 C 1.37900 * 121.50981 * 15.90887 * 19 18 17 25 25 H 0.96996 * 120.00093 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.47645 * 59.99989 * 9 7 2 27 27 H 1.09000 * 109.47297 * 299.99954 * 9 7 2 28 28 H 0.97002 * 119.99701 * 0.02562 * 10 9 7 29 29 H 0.96996 * 120.00472 * 359.97438 * 13 11 10 30 30 H 1.09002 * 109.64048 * 70.98299 * 16 14 13 31 31 H 1.08999 * 109.63763 * 310.57576 * 16 14 13 32 32 H 1.09010 * 109.33772 * 68.55444 * 18 17 16 33 33 H 1.09001 * 109.33789 * 188.21894 * 18 17 16 34 34 H 1.08000 * 119.85360 * 0.17748 * 20 19 18 35 35 H 1.08002 * 120.04870 * 180.02562 * 21 20 19 36 36 H 1.08001 * 120.07525 * 179.97438 * 22 21 20 37 37 H 1.08007 * 119.86324 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5583 -5.1056 0.0000 13 7 2.6295 -5.9077 0.0005 14 6 2.1412 -7.2890 -0.0006 15 1 1.2257 -7.3484 -0.5893 16 6 1.8515 -7.7273 1.4361 17 8 1.6211 -9.1408 1.4457 18 6 2.8026 -9.9033 1.2022 19 6 3.4907 -9.4157 -0.0462 20 6 4.4534 -10.2216 -0.6342 21 6 5.1069 -9.8054 -1.7769 22 6 4.8012 -8.5793 -2.3378 23 6 3.8417 -7.7763 -1.7540 24 6 3.1838 -8.1942 -0.6080 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 3.1566 -3.4355 0.0009 29 1 3.5832 -5.7305 0.0009 30 1 0.9665 -7.2094 1.8058 31 1 2.7058 -7.4911 2.0705 32 1 3.4794 -9.8013 2.0507 33 1 2.5357 -10.9528 1.0778 34 1 4.6932 -11.1794 -0.1965 35 1 5.8559 -10.4366 -2.2319 36 1 5.3110 -8.2508 -3.2315 37 1 3.6025 -6.8186 -2.1924 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334998043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:58 Heat of formation + Delta-G solvation = -51.159216 kcal Electronic energy + Delta-G solvation = -20757.249429 eV Core-core repulsion = 17499.298225 eV Total energy + Delta-G solvation = -3257.951204 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.70210 -39.00940 -37.65652 -35.05553 -34.04000 -32.38720 -31.91250 -31.05381 -29.13543 -26.97542 -25.59371 -24.00405 -22.74936 -22.02014 -20.29963 -20.19543 -18.28042 -17.39571 -16.64048 -16.05018 -15.96926 -15.61303 -15.41545 -14.74767 -14.60046 -14.27891 -14.17126 -13.69314 -13.47608 -13.18145 -12.89595 -12.61483 -12.35176 -12.00468 -11.95802 -11.69125 -11.28871 -10.97677 -10.88130 -10.71677 -10.30810 -10.09873 -9.54029 -9.39032 -9.10664 -8.91903 -8.74577 -8.61982 -7.79523 -6.15337 -4.22187 1.04162 1.12276 3.16141 3.25774 3.30962 3.32779 3.49152 3.82787 3.92663 4.32942 4.38831 4.43382 4.69512 4.76703 4.94995 5.08939 5.09075 5.11695 5.19218 5.20714 5.35805 5.42852 5.66960 5.76897 5.86116 5.92567 6.16545 6.25520 6.30887 6.69357 6.75811 6.97896 7.09564 7.48457 7.53425 7.56371 7.88571 8.02920 8.74853 8.90845 9.29559 9.46451 10.94847 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.029440 B = 0.003577 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.847658 B = 7826.748070 C = 8468.895551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.727 5.727 11 C 0.693 3.307 12 O -0.597 6.597 13 N -0.748 5.748 14 C 0.177 3.823 15 H 0.107 0.893 16 C 0.050 3.950 17 O -0.370 6.370 18 C 0.097 3.903 19 C -0.109 4.109 20 C -0.116 4.116 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.103 4.103 24 C -0.084 4.084 25 H 0.266 0.734 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.387 0.613 29 H 0.393 0.607 30 H 0.110 0.890 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.863 -19.898 -0.694 23.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.379 5.379 11 C 0.393 3.607 12 O -0.475 6.475 13 N -0.406 5.406 14 C 0.071 3.929 15 H 0.125 0.875 16 C -0.028 4.028 17 O -0.287 6.287 18 C 0.021 3.979 19 C -0.110 4.110 20 C -0.134 4.134 21 C -0.135 4.135 22 C -0.138 4.138 23 C -0.121 4.121 24 C -0.085 4.085 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.219 0.781 29 H 0.227 0.773 30 H 0.128 0.872 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.336 -19.996 -0.651 22.519 hybrid contribution 1.700 1.224 -0.197 2.104 sum 12.035 -18.772 -0.849 22.315 Atomic orbital electron populations 1.69962 1.06090 1.27410 1.48782 1.24938 0.94909 0.99381 0.94746 0.86472 0.79403 0.82347 0.78649 1.20102 1.21070 1.20093 1.21185 0.93222 0.90445 1.53329 0.92009 1.18996 0.87744 0.80977 0.97683 1.45729 1.10858 1.04311 1.77000 1.16156 0.85179 0.81048 0.78348 1.90890 1.14075 1.84071 1.58491 1.45174 1.08985 1.04095 1.82352 1.19985 0.96242 0.79679 0.96998 0.87496 1.23137 1.03205 0.80870 0.95607 1.88118 1.31283 1.17328 1.91959 1.21475 0.87210 0.96162 0.93095 1.20294 0.97966 0.94831 0.97943 1.20952 0.96523 0.99564 0.96393 1.21112 0.99779 0.96524 0.96134 1.21167 0.97954 0.94594 1.00049 1.21174 0.95830 1.00216 0.94877 1.19721 0.97705 0.94796 0.96265 0.92379 0.95686 0.95653 0.78131 0.77308 0.87227 0.92473 0.91608 0.87720 0.85797 0.85918 0.85795 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.27 7.10 5.43 -5.19 -0.03 7.07 16 10 N -0.73 -15.30 5.55 -66.41 -0.37 -15.67 16 11 C 0.69 13.99 8.53 -86.92 -0.74 13.25 16 12 O -0.60 -14.63 16.00 5.29 0.08 -14.54 16 13 N -0.75 -11.10 4.46 -59.75 -0.27 -11.36 16 14 C 0.18 2.51 2.73 -69.02 -0.19 2.32 16 15 H 0.11 1.78 7.57 -51.93 -0.39 1.39 16 16 C 0.05 0.68 6.41 37.14 0.24 0.92 16 17 O -0.37 -4.83 10.81 -35.23 -0.38 -5.21 16 18 C 0.10 0.95 6.66 35.98 0.24 1.19 16 19 C -0.11 -1.16 5.80 -104.62 -0.61 -1.77 16 20 C -0.12 -1.02 9.67 -39.50 -0.38 -1.40 16 21 C -0.12 -1.00 10.05 -39.64 -0.40 -1.40 16 22 C -0.12 -1.13 10.05 -39.64 -0.40 -1.53 16 23 C -0.10 -1.15 9.07 -39.51 -0.36 -1.51 16 24 C -0.08 -1.02 5.49 -104.55 -0.57 -1.59 16 25 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.39 6.93 8.34 -40.82 -0.34 6.59 16 29 H 0.39 4.80 8.35 -40.82 -0.34 4.46 16 30 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 31 H 0.06 0.70 8.07 -51.93 -0.42 0.28 16 32 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.13 1.46 7.74 -52.48 -0.41 1.05 16 LS Contribution 316.43 15.07 4.77 4.77 Total: -1.00 -32.72 316.43 -8.88 -41.60 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -4.82 Total: 7.81 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -3.61 Total: 2.20 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.10 Total: -52.41 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.30 Total: -19.76 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.72 -8.88 -41.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334998043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.561 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds