Wall clock time and date at job start Mon Mar 30 2020 01:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86800 * 120.00282 * 2 1 4 4 H 1.48506 * 109.47025 * 240.00212 * 3 2 1 5 5 H 1.48498 * 109.46803 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47661 * 119.99701 * 3 2 1 7 7 C 1.37881 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00434 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99562 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47340 * 179.97438 * 9 7 2 11 11 C 1.34770 * 120.00348 * 180.02562 * 10 9 7 12 12 O 1.21585 * 120.00368 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99760 * 180.02562 * 11 10 9 14 14 C 1.46509 * 119.99877 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.37450 * 34.85144 * 14 13 11 16 16 C 1.52975 * 109.42185 * 275.00006 * 14 13 11 17 17 O 1.43215 * 108.63450 * 190.77922 * 16 14 13 18 18 C 1.42718 * 113.13927 * 70.59573 * 17 16 14 19 19 C 1.50655 * 110.27466 * 308.30668 * 18 17 16 20 20 C 1.38648 * 118.71333 * 195.86180 * 19 18 17 21 21 C 1.38053 * 120.29724 * 180.17179 * 20 19 18 22 22 C 1.38253 * 119.90304 * 0.03484 * 21 20 19 23 23 C 1.38075 * 119.85902 * 359.90023 * 22 21 20 24 24 C 1.37900 * 121.50981 * 15.90887 * 19 18 17 25 25 H 0.96996 * 120.00093 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.47645 * 59.99989 * 9 7 2 27 27 H 1.09000 * 109.47297 * 299.99954 * 9 7 2 28 28 H 0.97002 * 119.99701 * 0.02562 * 10 9 7 29 29 H 0.96996 * 120.00472 * 359.97438 * 13 11 10 30 30 H 1.09002 * 109.64048 * 70.98299 * 16 14 13 31 31 H 1.08999 * 109.63763 * 310.57576 * 16 14 13 32 32 H 1.09010 * 109.33772 * 68.55444 * 18 17 16 33 33 H 1.09001 * 109.33789 * 188.21894 * 18 17 16 34 34 H 1.08000 * 119.85360 * 0.17748 * 20 19 18 35 35 H 1.08002 * 120.04870 * 180.02562 * 21 20 19 36 36 H 1.08001 * 120.07525 * 179.97438 * 22 21 20 37 37 H 1.08007 * 119.86324 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5583 -5.1056 0.0000 13 7 2.6295 -5.9077 0.0005 14 6 2.1412 -7.2890 -0.0006 15 1 1.2257 -7.3484 -0.5893 16 6 1.8515 -7.7273 1.4361 17 8 1.6211 -9.1408 1.4457 18 6 2.8026 -9.9033 1.2022 19 6 3.4907 -9.4157 -0.0462 20 6 4.4534 -10.2216 -0.6342 21 6 5.1069 -9.8054 -1.7769 22 6 4.8012 -8.5793 -2.3378 23 6 3.8417 -7.7763 -1.7540 24 6 3.1838 -8.1942 -0.6080 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 3.1566 -3.4355 0.0009 29 1 3.5832 -5.7305 0.0009 30 1 0.9665 -7.2094 1.8058 31 1 2.7058 -7.4911 2.0705 32 1 3.4794 -9.8013 2.0507 33 1 2.5357 -10.9528 1.0778 34 1 4.6932 -11.1794 -0.1965 35 1 5.8559 -10.4366 -2.2319 36 1 5.3110 -8.2508 -3.2315 37 1 3.6025 -6.8186 -2.1924 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334998043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:57 Heat of formation + Delta-G solvation = -74.951964 kcal Electronic energy + Delta-G solvation = -20758.281160 eV Core-core repulsion = 17499.298225 eV Total energy + Delta-G solvation = -3258.982935 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.74483 -40.51146 -38.54251 -36.51794 -35.88199 -34.38515 -32.69293 -32.17361 -30.24699 -28.88046 -26.45095 -25.26627 -24.35008 -23.06281 -21.84945 -21.24794 -19.92324 -18.49846 -17.99856 -17.56813 -17.17528 -16.78153 -16.49943 -16.24628 -16.13221 -15.58479 -15.18769 -14.96341 -14.82013 -14.30690 -14.08037 -13.96054 -13.95342 -13.46711 -13.20366 -12.90774 -12.69865 -12.61851 -12.23039 -12.05334 -11.70616 -11.49733 -11.34457 -11.13003 -10.79088 -10.30512 -9.83134 -9.66344 -9.53748 -8.27707 -6.44362 0.25462 0.37905 1.43812 1.48360 1.56243 1.76490 2.17255 2.39507 2.71169 2.89153 3.07256 3.41441 3.50221 3.70309 3.76486 4.00429 4.06077 4.22117 4.41037 4.44970 4.57144 4.63287 4.67020 4.82757 4.98448 5.05145 5.07602 5.26454 5.27368 5.45043 5.48150 5.55745 5.59628 5.65317 5.84738 6.01101 6.03782 6.20448 6.66939 7.22915 7.27272 7.66878 8.84443 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.029440 B = 0.003577 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.847658 B = 7826.748070 C = 8468.895551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.286 3.714 10 N -0.720 5.720 11 C 0.695 3.305 12 O -0.643 6.643 13 N -0.720 5.720 14 C 0.180 3.820 15 H 0.072 0.928 16 C 0.057 3.943 17 O -0.387 6.387 18 C 0.090 3.910 19 C -0.116 4.116 20 C -0.112 4.112 21 C -0.112 4.112 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.105 4.105 25 H 0.269 0.731 26 H -0.014 1.014 27 H -0.013 1.013 28 H 0.405 0.595 29 H 0.411 0.589 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.143 0.857 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.445 -21.163 -0.818 26.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.373 5.373 11 C 0.394 3.606 12 O -0.526 6.526 13 N -0.379 5.379 14 C 0.074 3.926 15 H 0.090 0.910 16 C -0.021 4.021 17 O -0.305 6.305 18 C 0.015 3.985 19 C -0.117 4.117 20 C -0.130 4.130 21 C -0.130 4.130 22 C -0.141 4.141 23 C -0.136 4.136 24 C -0.106 4.106 25 H 0.078 0.922 26 H 0.004 0.996 27 H 0.005 0.995 28 H 0.240 0.760 29 H 0.247 0.753 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.147 0.853 34 H 0.174 0.826 35 H 0.172 0.828 36 H 0.161 0.839 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 14.003 -21.318 -0.776 25.518 hybrid contribution 0.606 1.436 -0.192 1.571 sum 14.609 -19.882 -0.968 24.691 Atomic orbital electron populations 1.70132 1.08290 1.28653 1.49858 1.26060 0.95765 1.03861 0.93853 0.85192 0.77881 0.76551 0.79482 1.18667 1.21131 1.18637 1.21569 0.94320 0.90443 1.53054 0.89790 1.18427 0.88066 0.83217 0.94058 1.45290 1.10976 1.03631 1.77437 1.16251 0.85013 0.81521 0.77782 1.90860 1.16555 1.84785 1.60358 1.44852 1.09073 1.03449 1.80489 1.19937 0.96039 0.79291 0.97330 0.90963 1.22905 1.02509 0.81587 0.95136 1.88088 1.33495 1.16770 1.92102 1.21809 0.86460 0.96712 0.93562 1.20462 0.98587 0.94366 0.98314 1.21315 0.95234 1.00300 0.96121 1.21528 0.99639 0.96141 0.95646 1.21434 0.97273 0.94829 1.00540 1.21175 0.96902 1.00463 0.95031 1.19544 0.98197 0.95482 0.97350 0.92225 0.99627 0.99499 0.75956 0.75259 0.89962 0.90801 0.89624 0.85271 0.82608 0.82849 0.83946 0.86526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.99 42.33 29.54 68.60 2.03 44.36 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.56 -30.39 9.28 25.60 0.24 -30.15 16 8 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 9 C 0.29 15.94 5.43 85.63 0.46 16.41 16 10 N -0.72 -31.22 5.55 -482.30 -2.68 -33.89 16 11 C 0.69 29.36 8.53 179.06 1.53 30.89 16 12 O -0.64 -33.75 16.00 -3.98 -0.06 -33.81 16 13 N -0.72 -21.93 4.46 -461.22 -2.06 -23.99 16 14 C 0.18 5.29 2.73 44.28 0.12 5.41 16 15 H 0.07 2.62 7.57 -2.39 -0.02 2.60 16 16 C 0.06 1.59 6.41 71.97 0.46 2.05 16 17 O -0.39 -10.00 10.81 -148.98 -1.61 -11.61 16 18 C 0.09 1.55 6.66 71.22 0.47 2.02 16 19 C -0.12 -2.20 5.80 -19.86 -0.12 -2.32 16 20 C -0.11 -1.52 9.67 22.32 0.22 -1.30 16 21 C -0.11 -1.46 10.05 22.23 0.22 -1.23 16 22 C -0.12 -2.00 10.05 22.23 0.22 -1.78 16 23 C -0.12 -2.53 9.07 22.32 0.20 -2.33 16 24 C -0.10 -2.47 5.49 -19.82 -0.11 -2.58 16 25 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 26 H -0.01 -0.90 8.14 -2.38 -0.02 -0.92 16 27 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 28 H 0.41 14.39 8.34 -92.71 -0.77 13.62 16 29 H 0.41 9.82 8.35 -92.71 -0.77 9.05 16 30 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.07 1.78 8.07 -2.39 -0.02 1.76 16 32 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.12 2.68 7.74 -2.91 -0.02 2.66 16 Total: -1.00 -74.85 316.43 -0.16 -75.00 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -0.45 Total: 24.41 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 4.39 Total: 15.80 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -4.45 Total: -114.15 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -1.67 Total: -45.42 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -74.85 -0.16 -75.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334998043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.052 kcal (2) G-P(sol) polarization free energy of solvation -74.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds