Wall clock time and date at job start Mon Mar 30 2020 01:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99641 * 2 1 4 4 H 1.48504 * 109.47092 * 240.00039 * 3 2 1 5 5 H 1.48493 * 109.47209 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46875 * 120.00305 * 3 2 1 7 7 C 1.37873 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00113 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00029 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47340 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00076 * 179.97438 * 10 9 7 12 12 O 1.21589 * 119.99778 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99965 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00255 * 180.02562 * 13 11 10 15 15 H 1.09007 * 110.26488 * 327.07048 * 14 13 11 16 16 C 1.51376 * 110.15889 * 89.25312 * 14 13 11 17 17 C 1.38495 * 130.38402 * 281.22622 * 16 14 13 18 18 C 1.38103 * 120.21117 * 180.38548 * 17 16 14 19 19 C 1.38254 * 119.93614 * 0.28342 * 18 17 16 20 20 C 1.38106 * 119.93398 * 359.97438 * 19 18 17 21 21 C 1.38218 * 109.75712 * 102.11559 * 16 14 13 22 22 C 1.51374 * 109.75861 * 359.57799 * 21 16 14 23 23 C 1.54340 * 110.30554 * 204.99975 * 14 13 11 24 24 H 1.09004 * 110.99632 * 25.62138 * 23 14 13 25 25 O 1.42906 * 110.82649 * 149.09326 * 23 14 13 26 26 H 0.97000 * 120.00405 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47229 * 59.99934 * 9 7 2 28 28 H 1.09005 * 109.47302 * 300.00280 * 9 7 2 29 29 H 0.96998 * 119.99607 * 0.02562 * 10 9 7 30 30 H 0.97004 * 120.00139 * 0.02562 * 13 11 10 31 31 H 1.08002 * 119.89840 * 0.66749 * 17 16 14 32 32 H 1.07997 * 120.03401 * 180.30507 * 18 17 16 33 33 H 1.08004 * 120.03135 * 180.02562 * 19 18 17 34 34 H 1.08000 * 119.89016 * 179.97438 * 20 19 18 35 35 H 1.08998 * 110.29975 * 136.37651 * 22 21 16 36 36 H 1.09005 * 110.29745 * 258.43222 * 22 21 16 37 37 H 0.96691 * 114.00208 * 174.42275 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0018 11 6 1.7540 -4.8833 -0.0015 12 8 0.5586 -5.1055 -0.0006 13 7 2.6298 -5.9077 -0.0021 14 6 2.1416 -7.2889 -0.0023 15 1 1.2067 -7.3590 0.5539 16 6 1.9498 -7.7742 -1.4233 17 6 0.9239 -7.5349 -2.3224 18 6 0.9587 -8.0989 -3.5826 19 6 2.0176 -8.9099 -3.9465 20 6 3.0388 -9.1539 -3.0494 21 6 3.0054 -8.5898 -1.7850 22 6 3.9841 -8.7002 -0.6354 23 6 3.2002 -8.2312 0.6088 24 1 3.8518 -7.6927 1.2969 25 8 2.5775 -9.3382 1.2637 26 1 -0.4851 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8902 28 1 0.6248 -2.5571 0.8897 29 1 3.1568 -3.4353 -0.0021 30 1 3.5835 -5.7304 -0.0024 31 1 0.0963 -6.9016 -2.0389 32 1 0.1596 -7.9065 -4.2831 33 1 2.0465 -9.3514 -4.9317 34 1 3.8655 -9.7878 -3.3343 35 1 4.3071 -9.7338 -0.5117 36 1 4.8445 -8.0536 -0.8080 37 1 3.1994 -10.0029 1.5899 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336363065.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:32 Heat of formation + Delta-G solvation = -53.356908 kcal Electronic energy + Delta-G solvation = -20860.633507 eV Core-core repulsion = 17602.587004 eV Total energy + Delta-G solvation = -3258.046503 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.64718 -38.80989 -37.32114 -34.86208 -34.04182 -32.81175 -32.19651 -30.84945 -28.33279 -27.52002 -26.16291 -22.68609 -22.56131 -21.11615 -20.74251 -20.20520 -18.27361 -17.47516 -16.54021 -15.93552 -15.49966 -15.40860 -15.29524 -14.82068 -14.55266 -14.34966 -13.79346 -13.45949 -13.26492 -13.06383 -12.96778 -12.55715 -11.97721 -11.92454 -11.85275 -11.35980 -11.00944 -10.92587 -10.87094 -10.80307 -10.35873 -10.28743 -9.46690 -9.37117 -8.87463 -8.75487 -8.69155 -8.57697 -7.76778 -6.13671 -4.20365 1.33279 1.44041 3.13938 3.26786 3.31811 3.33647 3.76702 3.91795 4.09475 4.29652 4.37415 4.43300 4.76088 4.88846 5.02319 5.11699 5.16575 5.22314 5.27408 5.40126 5.53209 5.56190 5.75561 5.81203 6.02905 6.15653 6.44429 6.57994 6.69203 6.79127 7.03925 7.11329 7.39072 7.51992 7.55463 7.58917 7.91132 8.05136 8.77238 8.94326 9.33478 9.48985 10.96525 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024378 B = 0.003888 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.302747 B = 7199.503765 C = 7666.932057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.268 3.732 10 N -0.728 5.728 11 C 0.696 3.304 12 O -0.595 6.595 13 N -0.743 5.743 14 C 0.208 3.792 15 H 0.107 0.893 16 C -0.098 4.098 17 C -0.080 4.080 18 C -0.124 4.124 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.091 4.091 22 C -0.113 4.113 23 C 0.099 3.901 24 H 0.080 0.920 25 O -0.552 6.552 26 H 0.266 0.734 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.386 0.614 30 H 0.391 0.609 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.306 -19.338 -2.919 22.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.147 3.853 10 N -0.380 5.380 11 C 0.396 3.604 12 O -0.474 6.474 13 N -0.400 5.400 14 C 0.102 3.898 15 H 0.125 0.875 16 C -0.100 4.100 17 C -0.098 4.098 18 C -0.142 4.142 19 C -0.136 4.136 20 C -0.134 4.134 21 C -0.092 4.092 22 C -0.150 4.150 23 C 0.039 3.961 24 H 0.098 0.902 25 O -0.357 6.357 26 H 0.076 0.924 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.218 0.782 30 H 0.224 0.776 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 8.439 -19.007 -3.038 21.017 hybrid contribution 1.854 0.813 -0.052 2.025 sum 10.293 -18.194 -3.089 21.131 Atomic orbital electron populations 1.69966 1.06084 1.27373 1.48852 1.24935 0.94903 0.99357 0.94767 0.86477 0.79404 0.82375 0.78635 1.20111 1.21072 1.20105 1.21184 0.93214 0.90454 1.53240 0.92028 1.18983 0.87746 0.80975 0.97634 1.45711 1.10806 1.04290 1.77160 1.16086 0.85162 0.80942 0.78186 1.90870 1.14073 1.84044 1.58391 1.44984 1.08837 1.03970 1.82231 1.19690 0.98374 0.79998 0.91731 0.87479 1.20788 0.95011 0.97636 0.96517 1.20868 0.98201 0.98050 0.92720 1.21097 0.98783 0.98061 0.96298 1.21018 0.94417 0.98954 0.99179 1.20502 0.99136 1.00987 0.92757 1.20412 0.96205 0.97956 0.94628 1.21826 0.97506 1.02623 0.93057 1.22529 0.93278 0.87988 0.92351 0.90200 1.86527 1.37694 1.34269 1.77193 0.92406 0.95731 0.95690 0.78191 0.77569 0.85339 0.85879 0.86089 0.86574 0.89990 0.89304 0.77127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.27 7.22 5.43 -5.19 -0.03 7.19 16 10 N -0.73 -15.69 5.55 -66.41 -0.37 -16.06 16 11 C 0.70 14.53 8.56 -86.92 -0.74 13.78 16 12 O -0.60 -14.89 15.99 5.29 0.08 -14.80 16 13 N -0.74 -11.42 5.08 -58.79 -0.30 -11.72 16 14 C 0.21 3.06 2.96 -68.05 -0.20 2.86 16 15 H 0.11 1.90 7.52 -51.92 -0.39 1.51 16 16 C -0.10 -1.45 5.76 -104.20 -0.60 -2.06 16 17 C -0.08 -1.25 10.04 -39.54 -0.40 -1.65 16 18 C -0.12 -1.63 10.05 -39.63 -0.40 -2.03 16 19 C -0.12 -1.34 10.05 -39.62 -0.40 -1.74 16 20 C -0.12 -1.30 10.04 -39.54 -0.40 -1.69 16 21 C -0.09 -1.11 6.14 -104.20 -0.64 -1.75 16 22 C -0.11 -1.00 6.51 -26.85 -0.17 -1.18 16 23 C 0.10 1.02 4.04 -25.32 -0.10 0.92 16 24 H 0.08 0.68 8.08 -51.93 -0.42 0.27 16 25 O -0.55 -5.75 13.41 -35.23 -0.47 -6.23 16 26 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.39 7.08 8.34 -40.82 -0.34 6.74 16 30 H 0.39 4.70 8.65 -40.82 -0.35 4.34 16 31 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 32 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.38 1.97 9.11 45.56 0.41 2.39 16 LS Contribution 320.84 15.07 4.84 4.84 Total: -1.00 -34.77 320.84 -9.01 -43.78 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -4.00 Total: 10.63 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -4.50 Total: -0.81 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.07 Total: -53.33 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.39 Total: -21.03 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.77 -9.01 -43.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336363065.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.581 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds